Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

19459534 .. 19461865

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23801.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGAAGAAACCTCTCAAATTCTCTGTGGTGGATGCTTTCACTGAGTCAGCTTTCAAGGGCAACCCGGCAGCAGTTTGCTTGTTGGAGGAAGACAGAGACGACCAGTGGCTGCAAGCTCTGGCTGCTGAGTTCAATCTCTCCGAAACCTGTTACTTGACTCGGCTCAGTGACTCAGTTTCTGACCCTGCCTTGTCTTCTACTCCAGCTAGGTTCCGTCTCAGATGGTTCACACCAGTCACTGAGGTTGATCTGTGTGGCCATGCTACATTAGCAGCTGCATCTACCCTTTTTAAGTCTGGTTTGGTAAATACAGATATTATTGAATTTTCCACATTATCTGGAATTTTAACAGCTAAAAAGGTTCCAGATGGTGTTGAGGTAGCCAATGGTGAAGCACAAGACTCCTACTTTATTGAACTGAATTTTCCAGCTGATCCATCAAATGAATTCAATTCCACTGATGCTTTGTTAATATCCAATGCCTTGGGTGGTGCTTCAGTCATTGATATAAGGAGGACAACTGTCACGGATGATTTGCTTGTTCTGCTTCCATCAGGAAAAGCTGTTCTAGATTTACTGCCACAGTATGATGAAATCAAAAAGTGTCCAGGAACAAGGGGAGTAATTGTTACAGCGGTTGCTCCTCCGGAGTCTGGATATGATTTTTACAGTAGATTCTTTTGTCCTACAAATGGCATTGGTGAGGATCCTGTTTGTGGGAGCGCACATTGTGCCTTAGCATCATACTGGTGCAACAAGCTGGGAAAGTGTGATCTTGTTGCATATGCGGCATCACCTAGAGGAGGAACAATAAACATTCATCTGGATGAGCAGAATCAAAGGGTGCTGCTGCGAGGGAAAGCTGTGACTGTGATGGAAGGAACTGTGTTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

300

Amino Acids

32.15

Weight (kDa)

4.73

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	11 - 295	5e-84	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	649
AciI	CCGC	2 cut(s)	638, 791
AclWI	GGATC	3 cut(s)	431, 704, 717
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	5 cut(s)	20, 326, 345, 424, 449
AcuI	CTGAAG	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	734
AfiI	CCNNNNNNNGG	4 cut(s)	656, 695, 719, 806
AgsI	TTSAA	5 cut(s)	58, 136, 326, 419, 454
AjnI	CCWGG	1 cut(s)	610
AloI	GAACNNNNNNTCC	2 cut(s)	552, 584
AluBI	AGCT	9 cut(s)	53, 119, 209, 278, 356, 434, 566, 763, 866
AluI	AGCT	9 cut(s)	53, 119, 209, 278, 356, 434, 566, 763, 866
Alw26I	GTCTC	2 cut(s)	93, 224
AlwI	GGATC	3 cut(s)	431, 704, 717
AlwNI	CAGNNNCTG	3 cut(s)	112, 182, 242
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	7 cut(s)	71, 112, 125, 275, 278, 850, 853
ApoI	RAATTY	5 cut(s)	20, 326, 345, 424, 449
AspLEI	GCGC	1 cut(s)	728
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	404, 716, 789
BalI	TGGCCA	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	709
BbsI	GAAGAC	2 cut(s)	99, 189
BbvI	GCAGC	7 cut(s)	83, 99, 112, 265, 287, 837, 840
BccI	CCATC	5 cut(s)	219, 365, 448, 562, 871
BciT130I	CCWGG	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	93, 224
BfaI	CTAG	3 cut(s)	210, 572, 801
BisI	GCNGC	8 cut(s)	72, 113, 126, 276, 279, 792, 851, 854
BlsI	GCNGC	8 cut(s)	73, 114, 127, 277, 280, 793, 852, 855
Bme1390I	CCNGG	2 cut(s)	68, 612
BmiI	GGNNCC	3 cut(s)	215, 366, 711
BmrFI	CCNGG	2 cut(s)	68, 612
BmsI	GCATC	5 cut(s)	25, 290, 454, 752, 803
BoxI	GACNNNNGTC	1 cut(s)	524
BpiI	GAAGAC	2 cut(s)	99, 189
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	739
BpuMI	CCSGG	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	649
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bsc4I	CCNNNNNNNGG	4 cut(s)	656, 695, 719, 806
Bse1I	ACTGG	3 cut(s)	106, 236, 755
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	3 cut(s)	40, 538, 835
BseLI	CCNNNNNNNGG	4 cut(s)	656, 695, 719, 806
BseMII	CTCAG	6 cut(s)	36, 120, 181, 189, 234, 235
BseNI	ACTGG	3 cut(s)	106, 236, 755
BseRI	GAGGAG	2 cut(s)	636, 819
BseXI	GCAGC	7 cut(s)	83, 99, 112, 265, 287, 837, 840
BseYI	CCCAGC	1 cut(s)	763
BshFI	GGCC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	68, 650
BslI	CCNNNNNNNGG	4 cut(s)	656, 695, 719, 806
BsmAI	GTCTC	2 cut(s)	93, 224
BsmBI	CGTCTC	2 cut(s)	93, 224
BsnI	GGCC	1 cut(s)	261
Bsp13I	TCCGGA	1 cut(s)	649
Bsp143I	GATC	4 cut(s)	250, 436, 709, 775
BspACI	CCGC	2 cut(s)	638, 791
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	6 cut(s)	37, 121, 180, 188, 234, 235
BspEI	TCCGGA	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	215, 366, 711
BspPI	GGATC	3 cut(s)	431, 704, 717
BsrI	ACTGG	3 cut(s)	106, 236, 755
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	4 cut(s)	250, 436, 709, 775
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	5 cut(s)	526, 588, 674, 874, 889
BstAPI	GCANNNNNTGC	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	7 cut(s)	45, 129, 167, 175, 221, 243, 739
BstENI	CCTNNNNNAGG	1 cut(s)	804
BstF5I	GGATG	3 cut(s)	40, 538, 835
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	4 cut(s)	253, 439, 712, 778
BstMAI	GTCTC	2 cut(s)	93, 224
BstMBI	GATC	4 cut(s)	250, 436, 709, 775
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 272, 547, 734, 791
BstNI	CCWGG	1 cut(s)	612
BstPAI	GACNNNNGTC	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	66, 610
BstV1I	GCAGC	7 cut(s)	83, 99, 112, 265, 287, 837, 840
BstV2I	GAAGAC	2 cut(s)	99, 189
BstX2I	RGATCY	1 cut(s)	709
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	40, 538, 835
BtsIMutI	CAGTG	5 cut(s)	42, 113, 175, 240, 459
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	3 cut(s)	112, 182, 242
CfoI	GCGC	1 cut(s)	728
CviAII	CATG	1 cut(s)	263
DdeI	CTNAG	7 cut(s)	45, 129, 167, 175, 221, 243, 739
DpnI	GATC	4 cut(s)	252, 438, 711, 777
DpnII	GATC	4 cut(s)	250, 436, 709, 775
DraIII	CACNNNGTG	1 cut(s)	734
EaeI	YGGCCR	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	483
EcoNI	CCTNNNNNAGG	1 cut(s)	804
EcoRI	GAATTC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
Esp3I	CGTCTC	2 cut(s)	93, 224
FaeI	CATG	1 cut(s)	266
FaiI	YATR	7 cut(s)	264, 512, 591, 663, 748, 787, 789
FatI	CATG	1 cut(s)	262
FauNDI	CATATG	1 cut(s)	787
Fnu4HI	GCNGC	8 cut(s)	72, 113, 126, 276, 279, 792, 851, 854
FokI	GGATG	3 cut(s)	47, 545, 842
Fsp4HI	GCNGC	8 cut(s)	72, 113, 126, 276, 279, 792, 851, 854
FspBI	CTAG	3 cut(s)	210, 572, 801
GlaI	GCGC	1 cut(s)	727
GluI	GCNGC	8 cut(s)	72, 113, 126, 276, 279, 792, 851, 854
GsaI	CCCAGC	1 cut(s)	767
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	2 cut(s)	68, 650
HhaI	GCGC	1 cut(s)	728
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HinfI	GANTC	7 cut(s)	47, 160, 173, 404, 653, 678, 838
HpaII	CCGG	2 cut(s)	68, 650
HphI	GGTGA	3 cut(s)	404, 716, 789
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	3 cut(s)	145, 184, 224
Hpy188III	TCNNGA	7 cut(s)	342, 368, 558, 572, 650, 657, 827
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	875
HpyCH4III	ACNGT	5 cut(s)	526, 588, 674, 874, 889
HpyCH4V	TGCA	4 cut(s)	115, 281, 756, 785
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 272, 547, 734, 791
HpyF3I	CTNAG	7 cut(s)	45, 129, 167, 175, 221, 243, 739
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	726
Kpn2I	TCCGGA	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	250, 436, 709, 775
LmnI	GCTCC	2 cut(s)	649, 723
Lsp1109I	GCAGC	7 cut(s)	83, 99, 112, 265, 287, 837, 840
LweI	GCATC	5 cut(s)	25, 290, 454, 752, 803
MaeI	CTAG	3 cut(s)	210, 572, 801
MaeIII	GTNAC	6 cut(s)	152, 170, 238, 526, 631, 868
MalI	GATC	4 cut(s)	252, 438, 711, 777
MboI	GATC	4 cut(s)	250, 436, 709, 775
MboII	GAAGA	3 cut(s)	19, 104, 189
MflI	RGATCY	1 cut(s)	709
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	7 cut(s)	20, 326, 345, 424, 449, 454, 627
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	5 cut(s)	56, 154, 167, 398, 662
MmeI	TCCRAC	1 cut(s)	66
Mox20I	TGGCCA	1 cut(s)	261
MroI	TCCGGA	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	3 cut(s)	294, 350, 473
MslI	CAYNNNNRTG	2 cut(s)	751, 828
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	3 cut(s)	278, 434, 638
MspI	CCGG	2 cut(s)	68, 650
MspR9I	CCNGG	2 cut(s)	68, 612
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	5 cut(s)	125, 272, 547, 734, 791
NciI	CCSGG	1 cut(s)	68
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	4 cut(s)	250, 436, 709, 775
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	3 cut(s)	215, 366, 711
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	4 cut(s)	170, 238, 526, 868
PfeI	GAWTC	2 cut(s)	678, 838
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	8 cut(s)	73, 114, 127, 277, 280, 793, 852, 855
PleI	GAGTC	5 cut(s)	55, 154, 167, 398, 661
PpsI	GAGTC	5 cut(s)	55, 154, 167, 398, 661
PshAI	GACNNNNGTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	3 cut(s)	215, 366, 711
PstNI	CAGNNNCTG	3 cut(s)	112, 182, 242
PsuI	RGATCY	1 cut(s)	709
PvuII	CAGCTG	2 cut(s)	278, 434
RseI	CAYNNNNRTG	2 cut(s)	751, 828
SaqAI	TTAA	3 cut(s)	294, 350, 473
SatI	GCNGC	8 cut(s)	72, 113, 126, 276, 279, 792, 851, 854
Sau3AI	GATC	4 cut(s)	250, 436, 709, 775
SchI	GAGTC	5 cut(s)	56, 154, 167, 398, 662
ScrFI	CCNGG	2 cut(s)	68, 612
SfaNI	GCATC	5 cut(s)	25, 290, 454, 752, 803
SmiMI	CAYNNNNRTG	2 cut(s)	751, 828
Sse9I	AATT	7 cut(s)	20, 326, 345, 424, 449, 454, 627
SsiI	CCGC	2 cut(s)	638, 791
SspMI	CTAG	3 cut(s)	210, 572, 801
StyD4I	CCNGG	2 cut(s)	66, 610
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	5 cut(s)	526, 588, 674, 874, 889
TasI	AATT	7 cut(s)	20, 326, 345, 424, 449, 454, 627
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	2 cut(s)	678, 838
Tru1I	TTAA	3 cut(s)	294, 350, 473
Tru9I	TTAA	3 cut(s)	294, 350, 473
TscAI	CASTG	5 cut(s)	49, 113, 175, 247, 466
TseFI	GTSAC	4 cut(s)	170, 238, 526, 868
TseI	GCWGC	7 cut(s)	71, 112, 125, 275, 278, 850, 853
Tsp45I	GTSAC	4 cut(s)	170, 238, 526, 868
TspDTI	ATGAA	3 cut(s)	462, 609, 812
TspGWI	ACGGA	2 cut(s)	206, 545
TspRI	CASTG	5 cut(s)	49, 113, 175, 247, 466
XagI	CCTNNNNNAGG	1 cut(s)	804
XapI	RAATTY	5 cut(s)	20, 326, 345, 424, 449
XbaI	TCTAGA	1 cut(s)	571
XspI	CTAG	3 cut(s)	210, 572, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.