Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

40785395 .. 40795798

Gene Structure 10404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1288200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCGAAGAAAGCTGTGAAATACTCTGTGGTGGACGCGTTCACAGACTCCGCTTTCAAAGGGAACCCAGCAGCGGTTTGCTTGCTGGAGGAAGAAAGAGACGACCAGTGGTTACAAGCCGTGGCCTCCGAGTTCAACCTCTCCGAGACATGTTACTTGACTCGGCTCACTGAGTCTGACTCAACTCCTCGGTTCGGTCTCAGATGGTTCACTCCTTCCAATGAGGTTGAGCTTTGTGGTCATGCAACATTAGCAGCTGCATACACTCTCTTTAACTCTGGTTTGGTAAAGTCCGACATTGTTGAGTTTGCCACATTATCGGGAATCCTAAAAGCTAAAAAGGTTCCAGATGTTAAGACAGCCAACGGTTTGAATACTCACAATGGGGAAGCACAAGAGTCCTATTTTGTTGAACTGAATTTTCCTGCCGACCCGTCTAATGAATTCAACTCTGGTGATGTTTCGGTAATCTCTAAGGCCTTAGATGGTGCTTCTATGGTTGAAATAAGGAGGACAACTGTCACAGATGATTTACTTGTTGTGCTTCCATCAGCAAAAGCTGTCACAGATTTACAGCCGCAGATTGATGCAATTCGACAGTGTCCAGGGTCTAGGGGAGTGATTGTTACGGGGATTGCTCCTCCGGAATCTGGATATGATTTTTACAGTAGATTCTTCTGTCCCAAACATGGAATTGATGAGGATCCTGTTTGTGGGAGCGCACATTGTGCTCTTGCATCATACTGGTGCAAAAAACTTGGAAAGTCTGATGCATCACCTCGAGGGGGAGCAATAAACATTCATCTAGATGAGCAAAATCAAAGGGTACTGCTGCGAGGAAAAGCTGTTATGGTGATGGAAGGAACTGTTTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

293

Amino Acids

31.6

Weight (kDa)

5.13

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	11 - 288	6.7e-81	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	780
AccII	CGCG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	643
AciI	CCGC	3 cut(s)	51, 74, 578
AclWI	GGATC	2 cut(s)	698, 711
AcsI	RAATTY	2 cut(s)	418, 443
AdeI	CACNNNGTG	1 cut(s)	728
AfaI	GTAC	1 cut(s)	828
AfiI	CCNNNNNNNGG	6 cut(s)	73, 194, 650, 689, 713, 785
AflIII	ACRYGT	2 cut(s)	36, 149
AgsI	TTSAA	6 cut(s)	58, 136, 373, 413, 448, 503
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	7 cut(s)	14, 232, 257, 335, 560, 845, 875
AluI	AGCT	7 cut(s)	14, 232, 257, 335, 560, 845, 875
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	3 cut(s)	93, 140, 203
AlwI	GGATC	2 cut(s)	698, 711
Ama87I	CYCGRG	1 cut(s)	780
Aor13HI	TCCGGA	1 cut(s)	643
AoxI	GGCC	2 cut(s)	123, 477
ApeKI	GCWGC	4 cut(s)	71, 254, 257, 832
ApoI	RAATTY	2 cut(s)	418, 443
AspLEI	GCGC	1 cut(s)	722
AsuHPI	GGTGA	3 cut(s)	467, 768, 865
AvaI	CYCGRG	1 cut(s)	780
BamHI	GGATCC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	4 cut(s)	83, 244, 266, 819
BccI	CCATC	4 cut(s)	198, 479, 556, 850
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	606
BcoDI	GTCTC	3 cut(s)	93, 140, 203
BfaI	CTAG	2 cut(s)	612, 806
BisI	GCNGC	5 cut(s)	72, 255, 258, 578, 833
BlsI	GCNGC	5 cut(s)	73, 256, 259, 579, 834
Bme1390I	CCNGG	1 cut(s)	606
BmeT110I	CYCGRG	1 cut(s)	780
BmiI	GGNNCC	3 cut(s)	65, 345, 705
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	4 cut(s)	577, 746, 760, 782
BoxI	GACNNNNGTC	1 cut(s)	518
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	120, 188, 605
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 194, 650, 689, 713, 785
Bse1I	ACTGG	2 cut(s)	106, 749
Bse8I	GATNNNNATC	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	643
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	120, 188, 605
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	6 cut(s)	73, 194, 650, 689, 713, 785
BseMII	CTCAG	2 cut(s)	162, 214
BseNI	ACTGG	2 cut(s)	106, 749
BseRI	GAGGAG	2 cut(s)	177, 630
BseXI	GCAGC	4 cut(s)	83, 244, 266, 819
BseYI	CCCAGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	125, 479
BsiHKAI	GWGCWC	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	780
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	6 cut(s)	73, 194, 650, 689, 713, 785
BsmAI	GTCTC	3 cut(s)	93, 140, 203
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	2 cut(s)	125, 479
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	780
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp13I	TCCGGA	1 cut(s)	643
Bsp143I	GATC	1 cut(s)	703
BspACI	CCGC	3 cut(s)	51, 74, 578
BspANI	GGCC	2 cut(s)	125, 479
BspCNI	CTCAG	2 cut(s)	163, 213
BspEI	TCCGGA	1 cut(s)	643
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	3 cut(s)	65, 345, 705
BspPI	GGATC	2 cut(s)	698, 711
BspTNI	GGTCTC	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	106, 749
BssECI	CCNNGG	3 cut(s)	120, 188, 605
BssMI	GATC	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	5 cut(s)	368, 520, 600, 668, 868
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	4 cut(s)	171, 200, 474, 481
BstDSI	CCRYGG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	1 cut(s)	706
BstMAI	GTCTC	3 cut(s)	93, 140, 203
BstMBI	GATC	1 cut(s)	703
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 251, 728
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	1 cut(s)	153
BstPAI	GACNNNNGTC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	604
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	4 cut(s)	83, 244, 266, 819
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	2 cut(s)	125, 479
BtgI	CCRYGG	1 cut(s)	120
BtsIMutI	CAGTG	3 cut(s)	113, 168, 605
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	1 cut(s)	722
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	827
CviAII	CATG	3 cut(s)	150, 242, 689
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	4 cut(s)	171, 200, 474, 481
DpnI	GATC	1 cut(s)	705
DpnII	GATC	1 cut(s)	703
DraIII	CACNNNGTG	1 cut(s)	728
Eco147I	AGGCCT	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	780
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	775
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	3 cut(s)	153, 245, 692
FaiI	YATR	8 cut(s)	151, 243, 262, 497, 657, 690, 742, 851
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	3 cut(s)	149, 241, 688
Fnu4HI	GCNGC	5 cut(s)	72, 255, 258, 578, 833
Fsp4HI	GCNGC	5 cut(s)	72, 255, 258, 578, 833
FspBI	CTAG	2 cut(s)	612, 806
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	5 cut(s)	72, 255, 258, 578, 833
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	125, 479
HapII	CCGG	1 cut(s)	644
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	3 cut(s)	153, 245, 692
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HinfI	GANTC	8 cut(s)	47, 160, 173, 179, 324, 398, 647, 672
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	3 cut(s)	467, 768, 865
Hpy166II	GTNNAC	3 cut(s)	34, 42, 210
Hpy188I	TCNGA	6 cut(s)	130, 145, 178, 203, 295, 769
Hpy188III	TCNNGA	5 cut(s)	321, 347, 644, 651, 806
Hpy8I	GTNNAC	3 cut(s)	34, 42, 210
HpyAV	CCTTC	2 cut(s)	225, 854
HpyCH4III	ACNGT	5 cut(s)	368, 520, 600, 668, 868
HpyCH4V	TGCA	6 cut(s)	245, 260, 590, 737, 750, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 251, 728
HpyF3I	CTNAG	4 cut(s)	171, 200, 474, 481
Hsp92II	CATG	3 cut(s)	153, 245, 692
HspAI	GCGC	1 cut(s)	720
Kpn2I	TCCGGA	1 cut(s)	643
Kzo9I	GATC	1 cut(s)	703
LmnI	GCTCC	3 cut(s)	643, 717, 788
Lsp1109I	GCAGC	4 cut(s)	83, 244, 266, 819
LweI	GCATC	4 cut(s)	577, 746, 760, 782
MaeI	CTAG	2 cut(s)	612, 806
MaeIII	GTNAC	5 cut(s)	111, 152, 520, 562, 625
MalI	GATC	1 cut(s)	705
MboI	GATC	1 cut(s)	703
MboII	GAAGA	3 cut(s)	19, 104, 667
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	4 cut(s)	418, 443, 591, 693
MluI	ACGCGT	1 cut(s)	36
MlyI	GAGTC	5 cut(s)	41, 154, 173, 182, 407
MmeI	TCCRAC	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	775
MroI	TCCGGA	1 cut(s)	643
MseI	TTAA	2 cut(s)	273, 354
MslI	CAYNNNNRTG	2 cut(s)	745, 807
MspA1I	CMGCKG	2 cut(s)	74, 257
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	11, 251, 728
NdeII	GATC	1 cut(s)	703
NlaIII	CATG	3 cut(s)	153, 245, 692
NlaIV	GGNNCC	3 cut(s)	65, 345, 705
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	520, 562
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	1 cut(s)	153
PaeR7I	CTCGAG	1 cut(s)	780
PceI	AGGCCT	1 cut(s)	479
PciI	ACATGT	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	324, 647, 672
PflFI	GACNNNGTC	1 cut(s)	600
PkrI	GCNGC	5 cut(s)	73, 256, 259, 579, 834
PleI	GAGTC	5 cut(s)	41, 154, 173, 181, 406
PpsI	GAGTC	5 cut(s)	41, 154, 173, 181, 406
PscI	ACATGT	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	604
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	3 cut(s)	65, 345, 705
PspXI	VCTCGAGB	1 cut(s)	780
PsuI	RGATCY	1 cut(s)	703
PsyI	GACNNNGTC	1 cut(s)	600
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
RseI	CAYNNNNRTG	2 cut(s)	745, 807
SaqAI	TTAA	2 cut(s)	273, 354
SatI	GCNGC	5 cut(s)	72, 255, 258, 578, 833
Sau3AI	GATC	1 cut(s)	703
SchI	GAGTC	5 cut(s)	41, 154, 173, 182, 407
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	4 cut(s)	577, 746, 760, 782
Sfr274I	CTCGAG	1 cut(s)	780
SlaI	CTCGAG	1 cut(s)	780
SmiMI	CAYNNNNRTG	2 cut(s)	745, 807
SmlI	CTYRAG	1 cut(s)	780
SmoI	CTYRAG	1 cut(s)	780
Sse9I	AATT	4 cut(s)	418, 443, 591, 693
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	3 cut(s)	51, 74, 578
SspMI	CTAG	2 cut(s)	612, 806
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	604
TaaI	ACNGT	5 cut(s)	368, 520, 600, 668, 868
TaqI	TCGA	2 cut(s)	595, 781
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	4 cut(s)	418, 443, 591, 693
TauI	GCSGC	1 cut(s)	580
TfiI	GAWTC	3 cut(s)	324, 647, 672
Tru1I	TTAA	2 cut(s)	273, 354
Tru9I	TTAA	2 cut(s)	273, 354
TscAI	CASTG	3 cut(s)	113, 175, 605
TseFI	GTSAC	2 cut(s)	520, 562
TseI	GCWGC	4 cut(s)	71, 254, 257, 832
Tsp45I	GTSAC	2 cut(s)	520, 562
TspDTI	ATGAA	2 cut(s)	456, 791
TspRI	CASTG	3 cut(s)	113, 175, 605
Tth111I	GACNNNGTC	1 cut(s)	600
XapI	RAATTY	2 cut(s)	418, 443
XbaI	TCTAGA	1 cut(s)	805
XceI	RCATGY	1 cut(s)	153
XhoI	CTCGAG	1 cut(s)	780
XspI	CTAG	2 cut(s)	612, 806
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.