Rroxscaffold_7G00176110

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001362
Physical Location & Seq
Forward (+)
15586806 .. 15589739
2934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176110.1

Sequence Viewer

Length: 849 bp
ATGATCATTTTATCTATGGCGAAGAAACCTGTGAAATACTATCTGGTGGATGCTTTCACCGACTCAGCTTTCAAGGGGAATCCAGCAGCAGTTTGCTTGCTAGAGGAAGACAGAGATGATCAATGGATGCAAGCTCTGGCCGCGGAGTTCAATCTCTCCGAGACAGGTTACTTGACTAGCCTCAATGGCTCGGACCACTCGCCTTCTTTGACTTCCACACCAAGGTTCAGTCTCAGATGGTTCACTCCTGTTGCTGAGGTTGAGCTTTGTGGTCATGCAACATTAGCGGCTGCTTATACCCTGTTTATGTCTGGTTTGATTGATTCCGACGTTATTGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCATGTTAAGGCAGCCAACGGTTCACATTTAAAAAATGGTGAAGCACAAGATAACTATTTTATTGAACTGAATTTTCCTACTGACCCATCTTCTGAATTCAATTCTGCTGAGGTGGTGCTTCCATCTGGAAAGACTGTTGCAGATTTGTTGCCACAGTTTGATGCAATCGAAAAATGTCCAGGTACTGGAGTGATTGTAACAGGAGTTGCTCCGCCAGAGTCTGGATTTGATTTTATCAGTAGATTCTTCTGCCCGAAATTCGGGATCAGTGAGGATGCTGTTACTGGGAGTGCACATTGTGGCTTAGCACCATACTGGTGCAAGAAACTGGGAAAGTGTGATGTTGTTGCATATCAGGCGTCACCTAGAGGGGGAACACTAAACATTCGTCTGGATGAGAAAAATCAAAGGGTGCTACTCCGAGGGAAGGCCGTTACTGTGATGGAAGGAACTGTTCTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

282

Amino Acids

30.46

Weight (kDa)

5.07

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 16 - 165 4.3e-43 Phenazine biosynthesis-like protein
PhzC-PhzF PF02567 166 - 278 1.8e-31 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 569, 605
AccII CGCG 1 cut(s) 143
AciI CCGC 4 cut(s) 141, 143, 287, 596
AclWI GGATC 1 cut(s) 656
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 4 cut(s) 357, 454, 479, 641
AcyI GRCGYC 1 cut(s) 743
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 6 cut(s) 222, 569, 605, 644, 755, 811
AgsI TTSAA 4 cut(s) 73, 151, 449, 484
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 4 cut(s) 68, 134, 265, 368
AluI AGCT 4 cut(s) 68, 134, 265, 368
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 2 cut(s) 155, 236
Alw44I GTGCAC 1 cut(s) 675
AlwI GGATC 1 cut(s) 656
AlwNI CAGNNNCTG 2 cut(s) 569, 605
AoxI GGCC 2 cut(s) 138, 813
ApaLI GTGCAC 1 cut(s) 675
ApeKI GCWGC 3 cut(s) 86, 290, 395
ApoI RAATTY 4 cut(s) 357, 454, 479, 641
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 3 cut(s) 49, 434, 738
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 679
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 679
BbvCI CCTCAGC 2 cut(s) 255, 492
BbvI GCAGC 3 cut(s) 98, 277, 407
BccI CCATC 4 cut(s) 231, 478, 514, 820
BceAI ACGGC 1 cut(s) 800
BciT130I CCWGG 1 cut(s) 564
BclI TGATCA 2 cut(s) 3, 118
BcoDI GTCTC 2 cut(s) 155, 236
BfaI CTAG 4 cut(s) 101, 177, 750, 842
BglI GCCNNNNNGGC 1 cut(s) 186
BisI GCNGC 5 cut(s) 87, 141, 288, 291, 396
BlpI GCTNAGC 1 cut(s) 688
BlsI GCNGC 5 cut(s) 88, 142, 289, 292, 397
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 564
BmrI ACTGGG 2 cut(s) 678, 722
BmsI GCATC 4 cut(s) 40, 117, 535, 649
BmuI ACTGGG 2 cut(s) 678, 722
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 591
Bpu10I CCTNAGC 2 cut(s) 255, 492
Bpu1102I GCTNAGC 1 cut(s) 688
BsaHI GRCGYC 1 cut(s) 743
BsaJI CCNNGG 3 cut(s) 141, 221, 805
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 6 cut(s) 222, 569, 605, 644, 755, 811
Bse1I ACTGG 4 cut(s) 574, 673, 704, 717
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 3 cut(s) 141, 221, 805
BseGI GGATG 4 cut(s) 55, 132, 664, 784
BseLI CCNNNNNNNGG 6 cut(s) 222, 569, 605, 644, 755, 811
BseMII CTCAG 4 cut(s) 78, 246, 247, 483
BseNI ACTGG 4 cut(s) 574, 673, 704, 717
BseSI GKGCMC 1 cut(s) 679
BseXI GCAGC 3 cut(s) 98, 277, 407
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 140, 815
BsiHKAI GWGCWC 1 cut(s) 679
BslI CCNNNNNNNGG 6 cut(s) 222, 569, 605, 644, 755, 811
BsmAI GTCTC 2 cut(s) 155, 236
BsnI GGCC 2 cut(s) 140, 815
Bsp1286I GDGCHC 1 cut(s) 679
Bsp143I GATC 4 cut(s) 3, 118, 382, 648
Bsp1720I GCTNAGC 1 cut(s) 688
BspACI CCGC 4 cut(s) 141, 143, 287, 596
BspANI GGCC 2 cut(s) 140, 815
BspCNI CTCAG 4 cut(s) 77, 246, 247, 484
BspFNI CGCG 1 cut(s) 143
BspPI GGATC 1 cut(s) 656
BsrI ACTGG 4 cut(s) 574, 673, 704, 717
BssECI CCNNGG 3 cut(s) 141, 221, 805
BssMI GATC 4 cut(s) 3, 118, 382, 648
BssNI GRCGYC 1 cut(s) 743
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 5 cut(s) 404, 520, 540, 823, 838
BstACI GRCGYC 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 98, 132
BstDEI CTNAG 5 cut(s) 64, 233, 255, 492, 688
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 4 cut(s) 55, 132, 664, 784
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 4 cut(s) 6, 121, 385, 651
BstMAI GTCTC 2 cut(s) 155, 236
BstMBI GATC 4 cut(s) 3, 118, 382, 648
BstMWI GCNNNNNNNGC 4 cut(s) 140, 186, 284, 740
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 562
BstSLI GKGCMC 1 cut(s) 679
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 98, 277, 407
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 140, 815
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 4 cut(s) 55, 132, 664, 784
BtsIMutI CAGTG 1 cut(s) 658
Cac8I GCNNGC 2 cut(s) 98, 132
CaiI CAGNNNCTG 2 cut(s) 569, 605
Cfr13I GGNCC 1 cut(s) 193
Cfr42I CCGCGG 1 cut(s) 144
CseI GACGC 1 cut(s) 732
Csp6I GTAC 1 cut(s) 567
CviAII CATG 2 cut(s) 275, 386
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 5 cut(s) 64, 233, 255, 492, 688
DpnI GATC 4 cut(s) 5, 120, 384, 650
DpnII GATC 4 cut(s) 3, 118, 382, 648
DraI TTTAAA 1 cut(s) 414
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 1 cut(s) 138
EciI GGCGGA 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 193
EcoRI GAATTC 2 cut(s) 357, 479
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 278, 389
FaiI YATR 7 cut(s) 17, 276, 297, 308, 387, 697, 736
FatI CATG 2 cut(s) 274, 385
FbaI TGATCA 2 cut(s) 3, 118
Fnu4HI GCNGC 5 cut(s) 87, 141, 288, 291, 396
FokI GGATG 4 cut(s) 62, 139, 671, 791
Fsp4HI GCNGC 5 cut(s) 87, 141, 288, 291, 396
FspBI CTAG 4 cut(s) 101, 177, 750, 842
GluI GCNGC 5 cut(s) 87, 141, 288, 291, 396
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 2 cut(s) 140, 815
HgaI GACGC 1 cut(s) 732
Hin1I GRCGYC 1 cut(s) 743
Hin1II CATG 2 cut(s) 278, 389
HinfI GANTC 5 cut(s) 62, 79, 323, 602, 627
HphI GGTGA 3 cut(s) 49, 434, 738
Hpy166II GTNNAC 3 cut(s) 243, 407, 677
Hpy188I TCNGA 6 cut(s) 160, 193, 236, 328, 478, 806
Hpy188III TCNNGA 5 cut(s) 354, 510, 606, 646, 776
Hpy8I GTNNAC 3 cut(s) 243, 407, 677
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 3 cut(s) 213, 805, 824
HpyCH4III ACNGT 5 cut(s) 404, 520, 540, 823, 838
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 7 cut(s) 130, 278, 524, 548, 677, 705, 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 186, 284, 740
HpyF3I CTNAG 5 cut(s) 64, 233, 255, 492, 688
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 743
Hsp92II CATG 2 cut(s) 278, 389
Ksp22I TGATCA 2 cut(s) 3, 118
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 4 cut(s) 3, 118, 382, 648
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 3 cut(s) 98, 277, 407
LweI GCATC 4 cut(s) 40, 117, 535, 649
MaeI CTAG 4 cut(s) 101, 177, 750, 842
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 5 cut(s) 167, 580, 664, 744, 817
MalI GATC 4 cut(s) 5, 120, 384, 650
MboI GATC 4 cut(s) 3, 118, 382, 648
MboII GAAGA 4 cut(s) 34, 119, 465, 622
MhlI GDGCHC 1 cut(s) 679
MluCI AATT 5 cut(s) 357, 454, 479, 484, 641
MlyI GAGTC 2 cut(s) 56, 611
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 7 cut(s) 97, 191, 250, 487, 649, 746, 800
MseI TTAA 2 cut(s) 390, 413
MslI CAYNNNNRTG 1 cut(s) 700
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 564
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 140, 186, 284, 740
NdeII GATC 4 cut(s) 3, 118, 382, 648
NlaIII CATG 2 cut(s) 278, 389
NmuCI GTSAC 1 cut(s) 744
PfeI GAWTC 3 cut(s) 79, 323, 627
PflFI GACNNNGTC 1 cut(s) 349
PflMI CCANNNNNTGG 2 cut(s) 569, 605
PkrI GCNGC 5 cut(s) 88, 142, 289, 292, 397
PleI GAGTC 2 cut(s) 56, 610
PpsI GAGTC 2 cut(s) 56, 610
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspPI GGNCC 1 cut(s) 193
PstNI CAGNNNCTG 2 cut(s) 569, 605
PsyI GACNNNGTC 1 cut(s) 349
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 1 cut(s) 700
SacII CCGCGG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 390, 413
SatI GCNGC 5 cut(s) 87, 141, 288, 291, 396
Sau3AI GATC 4 cut(s) 3, 118, 382, 648
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 2 cut(s) 56, 611
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 1 cut(s) 679
SfaNI GCATC 4 cut(s) 40, 117, 535, 649
Sfr303I CCGCGG 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 700
Sse9I AATT 5 cut(s) 357, 454, 479, 484, 641
SsiI CCGC 4 cut(s) 141, 143, 287, 596
SspMI CTAG 4 cut(s) 101, 177, 750, 842
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 5 cut(s) 404, 520, 540, 823, 838
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 344, 552
TasI AATT 5 cut(s) 357, 454, 479, 484, 641
TauI GCSGC 2 cut(s) 143, 290
TfiI GAWTC 3 cut(s) 79, 323, 627
Tru1I TTAA 2 cut(s) 390, 413
Tru9I TTAA 2 cut(s) 390, 413
TscAI CASTG 1 cut(s) 658
TseFI GTSAC 1 cut(s) 744
TseI GCWGC 3 cut(s) 86, 290, 395
Tsp45I GTSAC 1 cut(s) 744
TspRI CASTG 1 cut(s) 658
Tth111I GACNNNGTC 1 cut(s) 349
Van91I CCANNNNNTGG 2 cut(s) 569, 605
VneI GTGCAC 1 cut(s) 675
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 4 cut(s) 357, 454, 479, 641
XspI CTAG 4 cut(s) 101, 177, 750, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.