Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

19456858 .. 19459016

Gene Structure 2159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCATTTTCCATGGCAAAGAAACCTGTGAAATACTCTGTGGTGGATGCTTTCACTGACTCAGCTTTCAAGGGAAATCCAGCAGCGGTTTGCTTTCTAGAGGAAGACAGGGATGATCTATGGATGCAAGCTCTGGCTACGGAGTTCAATCTCTCCCAGACGTGTTACTTGACTCTCCTCACTGGCTCAGATCACTTGCCTACTTTGACTTCCACACCAAGGTTCAATCTCAGATGGTTCACTCCTGTTGCTGAGGTTAAGCTTTGTGGTCATGCAACATTAGCAGCTGCTTATACCCTCTTTATGTCTGGTTTGATTGATTCCGACATTATTGAGTTCTCGACAATGTCTGGAATTTTAACAGCTAAGAAGGTTGCAGATCATGTTAAGGCTGCCAACGGTTCACATATTAAAAATGGAGAAGCACATGATTCCTTTTTTATTGAACTGAACTTTCCTGCTGACCCATCTTCTGAATTCAATTCTGCTGAGGTTTTGTTTATTTCCAACGCCTTGGGTGGTGCTCCTGTGGTTGAAATTATGAGGACAGTTGCAGATAATCTAATTGTTGTGCTTCCATCTGGAAAGAGTGTTGCAGATTTGTTGCCGCAGATTGATGCAATAGAAAAATGCCCCGGTTTTGGAGTGATTGTAACAGGAGTTGCTCCTCCAGAGTCTGGATTTGATTTTATCAGCAGATACTTCTGCCCGAAATTCGGGATCAATGAGGATCCTGTTTGTGGTAGTGCACATTGTGGCTTAGCACCATACTGGTGCAAAAAACTGGGGAAGTGTGATGTTGTTGCATATCAGGCATCCCCCAGAGGGGGAACACTAAACATTCATCTTGATGAGAAAACTCAAAGGGTGCTACTCCGAGGGAAGGCGATTACTGTGATGGAAGGAACTGTTCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

307

Amino Acids

33.01

Weight (kDa)

5.38

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	15 - 302	3.6e-83	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	677
AciI	CCGC	2 cut(s)	86, 608
AclWI	GGATC	3 cut(s)	725, 728, 738
AcsI	RAATTY	3 cut(s)	354, 476, 713
AdeI	CACNNNGTG	1 cut(s)	755
AfiI	CCNNNNNNNGG	9 cut(s)	219, 641, 677, 716, 740, 825, 826, 827, 883
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	6 cut(s)	70, 148, 226, 446, 481, 536
AjiI	CACGTC	1 cut(s)	162
AluBI	AGCT	5 cut(s)	65, 131, 262, 287, 365
AluI	AGCT	5 cut(s)	65, 131, 262, 287, 365
Alw21I	GWGCWC	2 cut(s)	526, 751
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	3 cut(s)	725, 728, 738
AlwNI	CAGNNNCTG	1 cut(s)	677
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	4 cut(s)	83, 284, 287, 392
ApoI	RAATTY	3 cut(s)	354, 476, 713
AsuC2I	CCSGG	1 cut(s)	636
BaeGI	GKGCMC	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	526, 751
BbvCI	CCTCAGC	2 cut(s)	252, 489
BbvI	GCAGC	4 cut(s)	95, 274, 296, 379
BccI	CCATC	4 cut(s)	228, 475, 586, 892
BcnI	CCSGG	1 cut(s)	636
BfaI	CTAG	2 cut(s)	98, 914
BisI	GCNGC	5 cut(s)	84, 285, 288, 393, 608
BlpI	GCTNAGC	1 cut(s)	760
BlsI	GCNGC	5 cut(s)	85, 286, 289, 394, 609
Bme1390I	CCNGG	1 cut(s)	636
BmgBI	CACGTC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	1 cut(s)	636
BmrI	ACTGGG	1 cut(s)	794
BmsI	GCATC	4 cut(s)	37, 114, 607, 824
BmuI	ACTGGG	1 cut(s)	794
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	2 cut(s)	252, 489
Bpu1102I	GCTNAGC	1 cut(s)	760
BpuMI	CCSGG	1 cut(s)	636
BsaJI	CCNNGG	5 cut(s)	12, 218, 513, 634, 877
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	9 cut(s)	219, 641, 677, 716, 740, 825, 826, 827, 883
Bse1I	ACTGG	3 cut(s)	187, 776, 789
BseDI	CCNNGG	5 cut(s)	12, 218, 513, 634, 877
BseGI	GGATG	4 cut(s)	52, 118, 129, 815
BseLI	CCNNNNNNNGG	9 cut(s)	219, 641, 677, 716, 740, 825, 826, 827, 883
BseMII	CTCAG	5 cut(s)	75, 201, 243, 244, 480
BseNI	ACTGG	3 cut(s)	187, 776, 789
BseRI	GAGGAG	2 cut(s)	167, 657
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	4 cut(s)	95, 274, 296, 379
BsiHKAI	GWGCWC	2 cut(s)	526, 751
BsiSI	CCGG	1 cut(s)	636
BslI	CCNNNNNNNGG	9 cut(s)	219, 641, 677, 716, 740, 825, 826, 827, 883
Bsp1286I	GDGCHC	2 cut(s)	526, 751
Bsp143I	GATC	5 cut(s)	115, 190, 379, 720, 730
Bsp1720I	GCTNAGC	1 cut(s)	760
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	86, 608
BspCNI	CTCAG	5 cut(s)	74, 200, 243, 244, 481
BspLI	GGNNCC	1 cut(s)	732
BspPI	GGATC	3 cut(s)	725, 728, 738
BsrI	ACTGG	3 cut(s)	187, 776, 789
BssECI	CCNNGG	5 cut(s)	12, 218, 513, 634, 877
BssMI	GATC	5 cut(s)	115, 190, 379, 720, 730
BssT1I	CCWWGG	3 cut(s)	12, 218, 513
Bst4CI	ACNGT	4 cut(s)	401, 550, 895, 910
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	7 cut(s)	61, 187, 230, 252, 366, 489, 760
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	52, 118, 129, 815
BstKTI	GATC	5 cut(s)	118, 193, 382, 723, 733
BstMBI	GATC	5 cut(s)	115, 190, 379, 720, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 812
BstSCI	CCNGG	1 cut(s)	634
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	4 cut(s)	95, 274, 296, 379
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	730
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	730
BtgI	CCRYGG	1 cut(s)	12
BtrI	CACGTC	1 cut(s)	162
BtsCI	GGATG	4 cut(s)	52, 118, 129, 815
BtsIMutI	CAGTG	2 cut(s)	54, 180
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	677
CviAII	CATG	4 cut(s)	13, 272, 383, 428
CviJI	RGCY	9 cut(s)	65, 131, 137, 186, 262, 287, 365, 392, 759
CviKI_1	RGCY	9 cut(s)	65, 131, 137, 186, 262, 287, 365, 392, 759
DdeI	CTNAG	7 cut(s)	61, 187, 230, 252, 366, 489, 760
DpnI	GATC	5 cut(s)	117, 192, 381, 722, 732
DpnII	GATC	5 cut(s)	115, 190, 379, 720, 730
DraIII	CACNNNGTG	1 cut(s)	755
Eco130I	CCWWGG	3 cut(s)	12, 218, 513
EcoRI	GAATTC	1 cut(s)	476
EcoT14I	CCWWGG	3 cut(s)	12, 218, 513
ErhI	CCWWGG	3 cut(s)	12, 218, 513
FaeI	CATG	4 cut(s)	16, 275, 386, 431
FatI	CATG	4 cut(s)	12, 271, 382, 427
Fnu4HI	GCNGC	5 cut(s)	84, 285, 288, 393, 608
FokI	GGATG	4 cut(s)	59, 125, 136, 802
Fsp4HI	GCNGC	5 cut(s)	84, 285, 288, 393, 608
FspBI	CTAG	2 cut(s)	98, 914
GluI	GCNGC	5 cut(s)	84, 285, 288, 393, 608
GsuI	CTGGAG	1 cut(s)	654
HapII	CCGG	1 cut(s)	636
Hin1II	CATG	4 cut(s)	16, 275, 386, 431
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	5 cut(s)	59, 172, 320, 431, 674
HpaII	CCGG	1 cut(s)	636
Hpy166II	GTNNAC	3 cut(s)	240, 404, 749
Hpy188I	TCNGA	5 cut(s)	190, 233, 325, 475, 878
Hpy188III	TCNNGA	8 cut(s)	98, 340, 351, 582, 671, 678, 718, 848
Hpy8I	GTNNAC	3 cut(s)	240, 404, 749
HpyAV	CCTTC	3 cut(s)	364, 877, 896
HpyCH4III	ACNGT	4 cut(s)	401, 550, 895, 910
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	9 cut(s)	127, 275, 377, 554, 596, 620, 749, 777, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 812
HpyF3I	CTNAG	7 cut(s)	61, 187, 230, 252, 366, 489, 760
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	4 cut(s)	16, 275, 386, 431
Kzo9I	GATC	5 cut(s)	115, 190, 379, 720, 730
LmnI	GCTCC	2 cut(s)	529, 670
Lsp1109I	GCAGC	4 cut(s)	95, 274, 296, 379
LweI	GCATC	4 cut(s)	37, 114, 607, 824
MaeI	CTAG	2 cut(s)	98, 914
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	164, 652
MalI	GATC	5 cut(s)	117, 192, 381, 722, 732
MboI	GATC	5 cut(s)	115, 190, 379, 720, 730
MboII	GAAGA	2 cut(s)	116, 462
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	2 cut(s)	526, 751
MluCI	AATT	6 cut(s)	354, 476, 481, 537, 564, 713
MlyI	GAGTC	3 cut(s)	53, 166, 683
MmeI	TCCRAC	2 cut(s)	348, 531
MseI	TTAA	4 cut(s)	258, 359, 387, 411
MslI	CAYNNNNRTG	2 cut(s)	772, 849
MspA1I	CMGCKG	2 cut(s)	86, 287
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	281, 812
NciI	CCSGG	1 cut(s)	636
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	5 cut(s)	115, 190, 379, 720, 730
NlaIII	CATG	4 cut(s)	16, 275, 386, 431
NlaIV	GGNNCC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	320, 431
PflFI	GACNNNGTC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	5 cut(s)	85, 286, 289, 394, 609
PleI	GAGTC	3 cut(s)	53, 166, 682
PpsI	GAGTC	3 cut(s)	53, 166, 682
PspN4I	GGNNCC	1 cut(s)	732
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	730
PsyI	GACNNNGTC	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	287
RseI	CAYNNNNRTG	2 cut(s)	772, 849
SaqAI	TTAA	4 cut(s)	258, 359, 387, 411
SatI	GCNGC	5 cut(s)	84, 285, 288, 393, 608
Sau3AI	GATC	5 cut(s)	115, 190, 379, 720, 730
SchI	GAGTC	3 cut(s)	53, 166, 683
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	526, 751
SfaNI	GCATC	4 cut(s)	37, 114, 607, 824
SmiMI	CAYNNNNRTG	2 cut(s)	772, 849
Sse9I	AATT	6 cut(s)	354, 476, 481, 537, 564, 713
SsiI	CCGC	2 cut(s)	86, 608
SspMI	CTAG	2 cut(s)	98, 914
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	3 cut(s)	12, 218, 513
TaaI	ACNGT	4 cut(s)	401, 550, 895, 910
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	341
TasI	AATT	6 cut(s)	354, 476, 481, 537, 564, 713
TauI	GCSGC	1 cut(s)	610
TfiI	GAWTC	2 cut(s)	320, 431
Tru1I	TTAA	4 cut(s)	258, 359, 387, 411
Tru9I	TTAA	4 cut(s)	258, 359, 387, 411
TscAI	CASTG	2 cut(s)	61, 187
TseI	GCWGC	4 cut(s)	83, 284, 287, 392
TspDTI	ATGAA	1 cut(s)	833
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	61, 187
Tth111I	GACNNNGTC	1 cut(s)	346
Van91I	CCANNNNNTGG	1 cut(s)	677
VneI	GTGCAC	1 cut(s)	747
XapI	RAATTY	3 cut(s)	354, 476, 713
XbaI	TCTAGA	1 cut(s)	97
XspI	CTAG	2 cut(s)	98, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.