Rorug06G0107400

R3H-associated N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001362
Physical Location & Seq
Forward (+)
14602564 .. 14603433
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0107400.1

Sequence Viewer

Length: 480 bp
ATGGGTATTTGTGCATCTACTCAGTGCTTGAAGGAAGGTGGAAGAATTGTAAATGGTTCAAGCACAGTCAAGATTGTTCATTTGGATGGGAAGCTACAAGAGCTCAGGAACCCAGTGAAAGCCTCCCACATTCTCTCACAGAATCCCAACTGCTTCCTCTGCCCCTCGGAGTTCATGTTCGTTGACTCGGACGCCCCCCAAGTTCCTGCCGATGAAGAGCTGCAGCTGGGTCAAATCTACTTCCTCATGCCAGTTTCTCAGTTAAGAGCATCACTGTCTCTCCAAGACTTGTGCTCACTTGCCATCAAGGCCAGTGTAGCTCTCGCAAAGGGTTCGAGCTTATCGGCGATGAGGTCGCCGGTTTCGGACAGAAATGTAGCTGCATCACAGCTGGGATGTTGCAAGGTTCCAACTGGGTTTGACATGGTGGGATCAATGAGTTCAAGGATGAGGCGAGGCAACCAAAGAATTGAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

159

Amino Acids

17.12

Weight (kDa)

8.53

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 121 4.6e-29 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 192
AgsI TTSAA 4 cut(s) 31, 60, 444, 473
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 8 cut(s) 94, 103, 220, 226, 320, 339, 380, 391
AluI AGCT 8 cut(s) 94, 103, 220, 226, 320, 339, 380, 391
Alw21I GWGCWC 2 cut(s) 105, 296
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 439
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 220, 223, 380
ApoI RAATTY 1 cut(s) 473
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 105, 296
BbvI GCAGC 3 cut(s) 207, 235, 367
BccI CCATC 2 cut(s) 80, 311
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BcoDI GTCTC 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 221
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 3 cut(s) 221, 224, 381
BlsI GCNGC 3 cut(s) 222, 225, 382
BmiI GGNNCC 2 cut(s) 110, 408
BmrI ACTGGG 2 cut(s) 107, 423
BmsI GCATC 3 cut(s) 23, 278, 392
BmuI ACTGGG 2 cut(s) 107, 423
Bpu10I CCTNAGC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 264, 294
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 4 cut(s) 113, 251, 312, 418
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 3 cut(s) 91, 401, 453
BseMII CTCAG 3 cut(s) 35, 118, 272
BseNI ACTGG 4 cut(s) 113, 251, 312, 418
BseXI GCAGC 3 cut(s) 207, 235, 367
BseYI CCCAGC 2 cut(s) 226, 391
BshFI GGCC 1 cut(s) 311
BsiHKAI GWGCWC 2 cut(s) 105, 296
BsiSI CCGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 105, 296
Bsp143I GATC 1 cut(s) 431
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 3 cut(s) 34, 117, 271
BspLI GGNNCC 2 cut(s) 110, 408
BspMAI CTGCAG 1 cut(s) 225
BspPI GGATC 1 cut(s) 439
BspQI GCTCTTC 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 4 cut(s) 113, 251, 312, 418
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 431
BssNI GRCGYC 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 67, 276
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 21, 104, 258
BstF5I GGATG 3 cut(s) 91, 401, 453
BstKTI GATC 1 cut(s) 434
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 431
BstMWI GCNNNNNNNGC 4 cut(s) 100, 159, 308, 317
BstSFI CTRYAG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 207, 235, 367
BsuRI GGCC 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 362
BtsCI GGATG 3 cut(s) 91, 401, 453
BtsIMutI CAGTG 4 cut(s) 29, 120, 272, 319
Cfr10I RCCGGY 1 cut(s) 358
CseI GACGC 1 cut(s) 200
CviAII CATG 3 cut(s) 175, 247, 424
DdeI CTNAG 3 cut(s) 21, 104, 258
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 3 cut(s) 178, 250, 427
FaiI YATR 3 cut(s) 176, 248, 425
FatI CATG 3 cut(s) 174, 246, 423
Fnu4HI GCNGC 3 cut(s) 221, 224, 381
FokI GGATG 3 cut(s) 98, 408, 460
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 221, 224, 381
GluI GCNGC 3 cut(s) 221, 224, 381
GsaI CCCAGC 2 cut(s) 230, 395
HaeIII GGCC 1 cut(s) 311
HapII CCGG 1 cut(s) 359
HgaI GACGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 3 cut(s) 178, 250, 427
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 2 cut(s) 142, 185
HpaII CCGG 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 169, 190, 367
Hpy188III TCNNGA 2 cut(s) 70, 106
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 25, 29
HpyCH4III ACNGT 2 cut(s) 67, 276
HpyCH4V TGCA 4 cut(s) 14, 223, 383, 402
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 159, 308, 317
HpyF3I CTNAG 3 cut(s) 21, 104, 258
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 3 cut(s) 178, 250, 427
Kzo9I GATC 1 cut(s) 431
LguI GCTCTTC 1 cut(s) 210
LpnPI CCDG 9 cut(s) 91, 126, 212, 219, 264, 325, 372, 377, 399
Lsp1109I GCAGC 3 cut(s) 207, 235, 367
LweI GCATC 3 cut(s) 23, 278, 392
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MboII GAAGA 2 cut(s) 54, 227
MhlI GDGCHC 2 cut(s) 105, 296
MluCI AATT 3 cut(s) 45, 468, 473
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 7 cut(s) 133, 167, 175, 254, 345, 444, 449
MseI TTAA 2 cut(s) 263, 478
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 2 cut(s) 226, 391
MspI CCGG 1 cut(s) 359
MwoI GCNNNNNNNGC 4 cut(s) 100, 159, 308, 317
NdeII GATC 1 cut(s) 431
NlaIII CATG 3 cut(s) 178, 250, 427
NlaIV GGNNCC 2 cut(s) 110, 408
PciSI GCTCTTC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 222, 225, 382
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 105
PspFI CCCAGC 2 cut(s) 226, 391
PspN4I GGNNCC 2 cut(s) 110, 408
PstI CTGCAG 1 cut(s) 225
PvuII CAGCTG 2 cut(s) 226, 391
RseI CAYNNNNRTG 1 cut(s) 84
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 263, 478
SatI GCNGC 3 cut(s) 221, 224, 381
Sau3AI GATC 1 cut(s) 431
SchI GAGTC 1 cut(s) 179
SduI GDGCHC 2 cut(s) 105, 296
SfaNI GCATC 3 cut(s) 23, 278, 392
SfcI CTRYAG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 3 cut(s) 45, 468, 473
SstI GAGCTC 1 cut(s) 105
TaaI ACNGT 2 cut(s) 67, 276
TaqI TCGA 1 cut(s) 335
TasI AATT 3 cut(s) 45, 468, 473
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 263, 478
Tru9I TTAA 2 cut(s) 263, 478
TscAI CASTG 4 cut(s) 29, 120, 279, 319
TseI GCWGC 3 cut(s) 220, 223, 380
TspDTI ATGAA 3 cut(s) 68, 163, 228
TspRI CASTG 4 cut(s) 29, 120, 279, 319
XapI RAATTY 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.