Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Forward (+)

15597628 .. 15599951

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCAAAGAAACCGGTGAAATACTCTGTGGTGGATGCTTTCACCGACTCAGCTTTCAAGGGGAATCCAGCAGCAGTTTGCTTACTAGAGGAAGACAGAGATGATCAATGGATGCAAGCTCTGGCCGCGGAGTTCAATCTCTCTCAGACATGTTACTTGACTCGCCTCAATGGCTCGGACCACTCGCCTTCTTTGACTTCCACACCAAGGTTCAAACTCAGATGGTTTACTCCTGTTGTAGAGGTTAAGCTTTGTGGTCATGCAACATTAGCGGCTGCTTATACCCTGTTTATGTCTGGTTTGATTGATTCCGACGTTATTGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCATGTTAAGGCAGCCAACGGTTCACATTTAAAAAATGGTGAAGCACAAGATAACTATTTTATTGAACTGAATTTTCCTGCTGACCCATCTTCTGAATTCAATTCTGCTGAGGTGGTGCTTCCATCTGGAAAGACTGTTGCAGATTTGTTGCCACAGTTAGATGCAATTGAAAAATGTCCAGGTATTGGAGTGATTGTAACAGGAGTTGCTCCTCCAGAGTCTGGATTTGATTTTATCAGTAGATTCTTCTGCCCAAAATTCGGGATCAATGAGGATCCTGTTTGTGGGAGTGCACATTGTGGCTTAGCACCATACTGGTGCAAGAAACTGGGAAAGTGTGATGTTGTTGCATATCAGGCATCACCTAGAGGGGGAACACTATACATTCATCTGGATGAGAAAAATCAAAGGGTGCTATTCCGAGGGAAGGCGGTTACTGTGATGGAAGGAACTGTTCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

277

Amino Acids

30.06

Weight (kDa)

5.7

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	11 - 160	1.4e-43	Phenazine biosynthesis-like protein
PhzC-PhzF	PF02567	161 - 273	3.9e-32	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	554, 590
AccII	CGCG	1 cut(s)	128
AciI	CCGC	4 cut(s)	126, 128, 272, 800
AclWI	GGATC	3 cut(s)	638, 641, 651
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	4 cut(s)	342, 439, 464, 626
AdeI	CACNNNGTG	1 cut(s)	668
AfiI	CCNNNNNNNGG	7 cut(s)	207, 554, 590, 629, 653, 740, 796
AflIII	ACRYGT	1 cut(s)	149
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	6 cut(s)	58, 136, 214, 434, 469, 539
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	4 cut(s)	53, 119, 250, 353
AluI	AGCT	4 cut(s)	53, 119, 250, 353
Alw21I	GWGCWC	1 cut(s)	664
Alw44I	GTGCAC	1 cut(s)	660
AlwI	GGATC	3 cut(s)	638, 641, 651
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	123
ApaLI	GTGCAC	1 cut(s)	660
ApeKI	GCWGC	3 cut(s)	71, 275, 380
ApoI	RAATTY	4 cut(s)	342, 439, 464, 626
AsiGI	ACCGGT	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	28, 34, 419, 723
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	664
BamHI	GGATCC	1 cut(s)	643
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	664
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	3 cut(s)	83, 262, 392
BccI	CCATC	4 cut(s)	216, 463, 499, 805
BciT130I	CCWGG	1 cut(s)	549
BclI	TGATCA	1 cut(s)	103
BfaI	CTAG	3 cut(s)	86, 735, 827
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
BlpI	GCTNAGC	1 cut(s)	673
BlsI	GCNGC	5 cut(s)	73, 127, 274, 277, 382
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	707
BmsI	GCATC	4 cut(s)	25, 102, 520, 737
BmuI	ACTGGG	1 cut(s)	707
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	673
BsaJI	CCNNGG	3 cut(s)	126, 206, 790
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	7 cut(s)	207, 554, 590, 629, 653, 740, 796
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	689, 702
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	3 cut(s)	126, 206, 790
BseGI	GGATG	3 cut(s)	40, 117, 769
BseLI	CCNNNNNNNGG	7 cut(s)	207, 554, 590, 629, 653, 740, 796
BseMII	CTCAG	4 cut(s)	63, 158, 232, 468
BseNI	ACTGG	2 cut(s)	689, 702
BseRI	GAGGAG	1 cut(s)	570
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	3 cut(s)	83, 262, 392
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	7 cut(s)	207, 554, 590, 629, 653, 740, 796
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp143I	GATC	4 cut(s)	103, 367, 633, 643
Bsp1720I	GCTNAGC	1 cut(s)	673
BspACI	CCGC	4 cut(s)	126, 128, 272, 800
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	4 cut(s)	62, 157, 231, 469
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	645
BspPI	GGATC	3 cut(s)	638, 641, 651
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	689, 702
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	126, 206, 790
BssMI	GATC	4 cut(s)	103, 367, 633, 643
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	5 cut(s)	389, 505, 525, 808, 823
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	5 cut(s)	49, 144, 218, 477, 673
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	40, 117, 769
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	4 cut(s)	106, 370, 636, 646
BstMBI	GATC	4 cut(s)	103, 367, 633, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 171, 269, 725
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	547
BstSLI	GKGCMC	1 cut(s)	664
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	83, 262, 392
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	40, 117, 769
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	178
Cfr42I	CCGCGG	1 cut(s)	129
CspAI	ACCGGT	1 cut(s)	13
CviAII	CATG	3 cut(s)	150, 260, 371
CviJI	RGCY	9 cut(s)	53, 119, 125, 174, 250, 275, 353, 383, 672
CviKI_1	RGCY	9 cut(s)	53, 119, 125, 174, 250, 275, 353, 383, 672
DdeI	CTNAG	5 cut(s)	49, 144, 218, 477, 673
DpnI	GATC	4 cut(s)	105, 369, 635, 645
DpnII	GATC	4 cut(s)	103, 367, 633, 643
DraI	TTTAAA	1 cut(s)	399
DraIII	CACNNNGTG	1 cut(s)	668
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	178
EcoRI	GAATTC	2 cut(s)	342, 464
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	153, 263, 374
FaiI	YATR	8 cut(s)	151, 261, 282, 293, 372, 682, 721, 751
FatI	CATG	3 cut(s)	149, 259, 370
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
FokI	GGATG	3 cut(s)	47, 124, 776
Fsp4HI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
FspBI	CTAG	3 cut(s)	86, 735, 827
GluI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	14
Hin1II	CATG	3 cut(s)	153, 263, 374
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	6 cut(s)	47, 64, 160, 308, 587, 612
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	4 cut(s)	28, 34, 419, 723
Hpy166II	GTNNAC	3 cut(s)	228, 392, 662
Hpy188I	TCNGA	6 cut(s)	147, 178, 221, 313, 463, 791
Hpy188III	TCNNGA	6 cut(s)	339, 495, 584, 591, 631, 761
Hpy8I	GTNNAC	3 cut(s)	228, 392, 662
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	198, 790, 809
HpyCH4III	ACNGT	5 cut(s)	389, 505, 525, 808, 823
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	7 cut(s)	115, 263, 509, 533, 662, 690, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 171, 269, 725
HpyF3I	CTNAG	5 cut(s)	49, 144, 218, 477, 673
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	153, 263, 374
Ksp22I	TGATCA	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	103, 367, 633, 643
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	3 cut(s)	83, 262, 392
LweI	GCATC	4 cut(s)	25, 102, 520, 737
MaeI	CTAG	3 cut(s)	86, 735, 827
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	152, 565, 802
MalI	GATC	4 cut(s)	105, 369, 635, 645
MboI	GATC	4 cut(s)	103, 367, 633, 643
MboII	GAAGA	3 cut(s)	104, 450, 607
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	664
MluCI	AATT	6 cut(s)	342, 439, 464, 469, 534, 626
MlyI	GAGTC	3 cut(s)	41, 154, 596
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	8 cut(s)	82, 176, 235, 472, 591, 634, 731, 785
MseI	TTAA	3 cut(s)	246, 375, 398
MslI	CAYNNNNRTG	2 cut(s)	685, 762
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	549
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	4 cut(s)	125, 171, 269, 725
NdeII	GATC	4 cut(s)	103, 367, 633, 643
NlaIII	CATG	3 cut(s)	153, 263, 374
NlaIV	GGNNCC	1 cut(s)	645
NspI	RCATGY	1 cut(s)	153
PciI	ACATGT	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	64, 308, 612
PflFI	GACNNNGTC	1 cut(s)	334
PflMI	CCANNNNNTGG	2 cut(s)	554, 590
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	5 cut(s)	73, 127, 274, 277, 382
PleI	GAGTC	3 cut(s)	41, 154, 595
PpsI	GAGTC	3 cut(s)	41, 154, 595
PscI	ACATGT	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	643
PsyI	GACNNNGTC	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	685, 762
SacII	CCGCGG	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	246, 375, 398
SatI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
Sau3AI	GATC	4 cut(s)	103, 367, 633, 643
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	3 cut(s)	41, 154, 596
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	1 cut(s)	664
SfaNI	GCATC	4 cut(s)	25, 102, 520, 737
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	685, 762
Sse9I	AATT	6 cut(s)	342, 439, 464, 469, 534, 626
SsiI	CCGC	4 cut(s)	126, 128, 272, 800
SspMI	CTAG	3 cut(s)	86, 735, 827
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	5 cut(s)	389, 505, 525, 808, 823
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	329
TasI	AATT	6 cut(s)	342, 439, 464, 469, 534, 626
TauI	GCSGC	2 cut(s)	128, 275
TfiI	GAWTC	3 cut(s)	64, 308, 612
Tru1I	TTAA	3 cut(s)	246, 375, 398
Tru9I	TTAA	3 cut(s)	246, 375, 398
TseI	GCWGC	3 cut(s)	71, 275, 380
TspDTI	ATGAA	1 cut(s)	746
Tth111I	GACNNNGTC	1 cut(s)	334
Van91I	CCANNNNNTGG	2 cut(s)	554, 590
VneI	GTGCAC	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	4 cut(s)	342, 439, 464, 626
XceI	RCATGY	1 cut(s)	153
XspI	CTAG	3 cut(s)	86, 735, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.