Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

40818002 .. 40823151

Gene Structure 5150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1288500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCGAAGAAAGCTGTGAAATACTCTGTGGTGGACGCGTTCACAGACTCGGCTTTCAAAGGGAACCCAGCAGCGGTTTGCTTGCTGGAGGAAGAAAGAGACGACCAGTGGTTACAAGCCGTGGCCGCCGAGTTCAACCTCTCCGAGACATGTTACTTGACTCGGCTCACTGAGTCTGACTCAACCCCTCGGTTCGGTGTCAGATGGTTCACTCCTTCCAATGAGGTTGAGCTTTGTGGTCATGCAACATTAGCAGCTGCATACACTCTCTTTAACTCTGGTTTGGTAAAGTCCGACATTGTTGAGTTTGCCACATTATCGGGAATCCTAAAAGCTAAAAAGGTTCCAGATGCTAAGACAGCCAACGGTTTGAATACTCACAATGGGGAAGCACAAGAGTCCTATTTTGTTGAACTGAATTTTCCTGCCGACCCGTCTAATGAATTCAACTCTGGTGATGTTTCGGTAATCTCTAAGGCCTTAGATGGTGCTTCTATGGTTGAAATAAGGAGGACAACTGTCACAGATGATTTACTTGTTGTGCTTCCATCAGCAAAAGCTGTCACAGATTTACAGCCGCAGTTTGATGCAATTCGACAATGTCCAGGGTCTAGCGGAGTGATCATTACGGGGATTGCTCCTCCGGAATCAGGATATGATTTTTACAGTAGATACTTTTGTCCCAAACATGGGATTGATGAGGATCCCGTTACTGGGAGCGCACATTGTGCCCTTGCATCATACTGGTGCAAAAAACTTGGAAAGTCTGATGCATCACCTCGAGGGGGAGCAATAAACGTTCATCTAGATGAGCAAAATCAAAGGGCACTGCTGCGAGGAAAAGCTGTTATGGTGATGGAAGGAACTGTTTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

293

Amino Acids

31.5

Weight (kDa)

5.04

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	11 - 288	1.1e-79	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	780
AccII	CGCG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	643
AciI	CCGC	4 cut(s)	74, 126, 578, 615
AclI	AACGTT	1 cut(s)	798
AclWI	GGATC	2 cut(s)	698, 711
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	418, 443
AdeI	CACNNNGTG	1 cut(s)	728
AfiI	CCNNNNNNNGG	8 cut(s)	73, 194, 650, 689, 690, 713, 714, 785
AflIII	ACRYGT	2 cut(s)	36, 149
AgsI	TTSAA	6 cut(s)	58, 136, 373, 413, 448, 503
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	7 cut(s)	14, 232, 257, 335, 560, 845, 875
AluI	AGCT	7 cut(s)	14, 232, 257, 335, 560, 845, 875
Alw26I	GTCTC	2 cut(s)	93, 140
AlwI	GGATC	2 cut(s)	698, 711
Ama87I	CYCGRG	1 cut(s)	780
Aor13HI	TCCGGA	1 cut(s)	643
AoxI	GGCC	2 cut(s)	123, 477
ApeKI	GCWGC	4 cut(s)	71, 254, 257, 832
ApoI	RAATTY	2 cut(s)	418, 443
AspLEI	GCGC	1 cut(s)	722
AsuHPI	GGTGA	3 cut(s)	467, 768, 865
AvaI	CYCGRG	1 cut(s)	780
BaeGI	GKGCMC	2 cut(s)	733, 829
BaeI	ACNNNNGTAYC	2 cut(s)	664, 697
BamHI	GGATCC	1 cut(s)	703
BbvI	GCAGC	4 cut(s)	83, 244, 266, 819
BccI	CCATC	4 cut(s)	198, 479, 556, 850
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	606
BclI	TGATCA	1 cut(s)	621
BcoDI	GTCTC	2 cut(s)	93, 140
BfaI	CTAG	2 cut(s)	612, 806
BisI	GCNGC	6 cut(s)	72, 126, 255, 258, 578, 833
BlsI	GCNGC	6 cut(s)	73, 127, 256, 259, 579, 834
Bme1390I	CCNGG	1 cut(s)	606
BmeT110I	CYCGRG	1 cut(s)	780
BmiI	GGNNCC	3 cut(s)	65, 345, 705
BmrFI	CCNGG	1 cut(s)	606
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	5 cut(s)	340, 577, 746, 760, 782
BmuI	ACTGGG	1 cut(s)	723
BoxI	GACNNNNGTC	1 cut(s)	518
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	702
BsaJI	CCNNGG	3 cut(s)	120, 188, 605
BsaWI	WCCGGW	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	8 cut(s)	73, 194, 650, 689, 690, 713, 714, 785
Bse1I	ACTGG	3 cut(s)	106, 718, 749
Bse8I	GATNNNNATC	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	643
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	120, 188, 605
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	8 cut(s)	73, 194, 650, 689, 690, 713, 714, 785
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	3 cut(s)	106, 718, 749
BseRI	GAGGAG	1 cut(s)	630
BseSI	GKGCMC	2 cut(s)	733, 829
BseXI	GCAGC	4 cut(s)	83, 244, 266, 819
BseYI	CCCAGC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	125, 479
BsiHKCI	CYCGRG	1 cut(s)	780
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	8 cut(s)	73, 194, 650, 689, 690, 713, 714, 785
BsmAI	GTCTC	2 cut(s)	93, 140
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	2 cut(s)	125, 479
BsoBI	CYCGRG	1 cut(s)	780
Bsp1286I	GDGCHC	2 cut(s)	733, 829
Bsp13I	TCCGGA	1 cut(s)	643
Bsp143I	GATC	2 cut(s)	621, 703
BspACI	CCGC	4 cut(s)	74, 126, 578, 615
BspANI	GGCC	2 cut(s)	125, 479
BspCNI	CTCAG	1 cut(s)	163
BspEI	TCCGGA	1 cut(s)	643
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	3 cut(s)	65, 345, 705
BspPI	GGATC	2 cut(s)	698, 711
BsrI	ACTGG	3 cut(s)	106, 718, 749
BssECI	CCNNGG	3 cut(s)	120, 188, 605
BssMI	GATC	2 cut(s)	621, 703
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	4 cut(s)	368, 520, 668, 868
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	4 cut(s)	171, 354, 474, 481
BstDSI	CCRYGG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	2 cut(s)	624, 706
BstMAI	GTCTC	2 cut(s)	93, 140
BstMBI	GATC	2 cut(s)	621, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 125, 251, 359, 728
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	1 cut(s)	153
BstPAI	GACNNNNGTC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	604
BstSLI	GKGCMC	2 cut(s)	733, 829
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	4 cut(s)	83, 244, 266, 819
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	2 cut(s)	125, 479
BtgI	CCRYGG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	3 cut(s)	113, 168, 827
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	1 cut(s)	722
CseI	GACGC	1 cut(s)	44
CviAII	CATG	3 cut(s)	150, 242, 689
DdeI	CTNAG	4 cut(s)	171, 354, 474, 481
DpnI	GATC	2 cut(s)	623, 705
DpnII	GATC	2 cut(s)	621, 703
DraIII	CACNNNGTG	1 cut(s)	728
EaeI	YGGCCR	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	780
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	775
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	3 cut(s)	153, 245, 692
FaiI	YATR	8 cut(s)	151, 243, 262, 497, 657, 690, 742, 851
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	3 cut(s)	149, 241, 688
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	6 cut(s)	72, 126, 255, 258, 578, 833
Fsp4HI	GCNGC	6 cut(s)	72, 126, 255, 258, 578, 833
FspBI	CTAG	2 cut(s)	612, 806
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	6 cut(s)	72, 126, 255, 258, 578, 833
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	125, 479
HapII	CCGG	1 cut(s)	644
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	3 cut(s)	153, 245, 692
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HinfI	GANTC	7 cut(s)	47, 160, 173, 179, 324, 398, 647
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	3 cut(s)	467, 768, 865
Hpy166II	GTNNAC	3 cut(s)	34, 42, 210
Hpy188I	TCNGA	5 cut(s)	145, 178, 203, 295, 769
Hpy188III	TCNNGA	5 cut(s)	321, 347, 644, 651, 806
Hpy8I	GTNNAC	3 cut(s)	34, 42, 210
HpyAV	CCTTC	2 cut(s)	225, 854
HpyCH4III	ACNGT	4 cut(s)	368, 520, 668, 868
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	6 cut(s)	245, 260, 590, 737, 750, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 125, 251, 359, 728
HpyF3I	CTNAG	4 cut(s)	171, 354, 474, 481
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	3 cut(s)	153, 245, 692
HspAI	GCGC	1 cut(s)	720
Kpn2I	TCCGGA	1 cut(s)	643
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	2 cut(s)	621, 703
LmnI	GCTCC	3 cut(s)	643, 717, 788
Lsp1109I	GCAGC	4 cut(s)	83, 244, 266, 819
LweI	GCATC	5 cut(s)	340, 577, 746, 760, 782
MaeI	CTAG	2 cut(s)	612, 806
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	5 cut(s)	111, 152, 520, 562, 709
MalI	GATC	2 cut(s)	623, 705
MboI	GATC	2 cut(s)	621, 703
MboII	GAAGA	2 cut(s)	19, 104
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	2 cut(s)	733, 829
MluCI	AATT	3 cut(s)	418, 443, 591
MluI	ACGCGT	1 cut(s)	36
MlyI	GAGTC	5 cut(s)	41, 154, 173, 182, 407
MmeI	TCCRAC	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	775
MroI	TCCGGA	1 cut(s)	643
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	2 cut(s)	745, 807
MspA1I	CMGCKG	2 cut(s)	74, 257
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	5 cut(s)	11, 125, 251, 359, 728
NdeII	GATC	2 cut(s)	621, 703
NlaIII	CATG	3 cut(s)	153, 245, 692
NlaIV	GGNNCC	3 cut(s)	65, 345, 705
NmeAIII	GCCGAG	3 cut(s)	29, 142, 154
NmuCI	GTSAC	2 cut(s)	520, 562
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	1 cut(s)	153
PaeR7I	CTCGAG	1 cut(s)	780
PceI	AGGCCT	1 cut(s)	479
PciI	ACATGT	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	324, 647
PflFI	GACNNNGTC	1 cut(s)	600
PkrI	GCNGC	6 cut(s)	73, 127, 256, 259, 579, 834
PleI	GAGTC	5 cut(s)	41, 154, 173, 181, 406
PpsI	GAGTC	5 cut(s)	41, 154, 173, 181, 406
PscI	ACATGT	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	518
Psp1406I	AACGTT	1 cut(s)	798
Psp6I	CCWGG	1 cut(s)	604
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	3 cut(s)	65, 345, 705
PspXI	VCTCGAGB	1 cut(s)	780
PsuI	RGATCY	1 cut(s)	703
PsyI	GACNNNGTC	1 cut(s)	600
PvuII	CAGCTG	1 cut(s)	257
RseI	CAYNNNNRTG	2 cut(s)	745, 807
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	6 cut(s)	72, 126, 255, 258, 578, 833
Sau3AI	GATC	2 cut(s)	621, 703
SchI	GAGTC	5 cut(s)	41, 154, 173, 182, 407
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	2 cut(s)	733, 829
SfaNI	GCATC	5 cut(s)	340, 577, 746, 760, 782
Sfr274I	CTCGAG	1 cut(s)	780
SlaI	CTCGAG	1 cut(s)	780
SmiMI	CAYNNNNRTG	2 cut(s)	745, 807
SmlI	CTYRAG	1 cut(s)	780
SmoI	CTYRAG	1 cut(s)	780
Sse9I	AATT	3 cut(s)	418, 443, 591
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	4 cut(s)	74, 126, 578, 615
SspMI	CTAG	2 cut(s)	612, 806
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	604
TaaI	ACNGT	4 cut(s)	368, 520, 668, 868
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	2 cut(s)	595, 781
TasI	AATT	3 cut(s)	418, 443, 591
TauI	GCSGC	2 cut(s)	128, 580
TfiI	GAWTC	2 cut(s)	324, 647
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	3 cut(s)	113, 175, 834
TseFI	GTSAC	2 cut(s)	520, 562
TseI	GCWGC	4 cut(s)	71, 254, 257, 832
Tsp45I	GTSAC	2 cut(s)	520, 562
TspDTI	ATGAA	2 cut(s)	456, 791
TspRI	CASTG	3 cut(s)	113, 175, 834
Tth111I	GACNNNGTC	1 cut(s)	600
XapI	RAATTY	2 cut(s)	418, 443
XbaI	TCTAGA	1 cut(s)	805
XceI	RCATGY	1 cut(s)	153
XhoI	CTCGAG	1 cut(s)	780
XspI	CTAG	2 cut(s)	612, 806
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.