Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

53522596 .. 53524327

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG344300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGAAGAAGCCTGTCAAATTCTCTGTGGTGGATGCATTCACTGAGTCAGCTTTCAAGGGAAACCCGGCAGCGGTTTGCTTGTTGGAGGAAGACAGAGATGACAAGTGGTTGCAAGCTCTGGCTGCCGAGTTTAATCTCTCCGAAACCTGTTATTTGAGTCGGCTCACTGACTTGGTTTCTGACCCTGCTTTGTCTTCTACTCCAGCTAGGTTCCGTCTCAGATGGTTCACACCTGTCACTGAGGTTGATCTTTGTGGTCATGCTACATTAGCAGCTGCATCTACCCTATTTAAGTCTGGTTTGGTAAATTCCAACATTATTGAGTTTTCCACATTATCTGGAATTTTAACAGCTAAAAAGGTTCCAGATGATATTAAGGTATCCAGTGGTTCAACTATTCCAAATGGTGAAACACAAGACTCCTACTTTATTGAATTGAATTTTCCAGCTGATCCATCAAATGAATTCAATTCTGCTGATGCTTCGTTAATATCCAATGCCTTGGATGGTGCTTCAGTCATTGATATAAGGAGGACAACTGTCACAGATGATTTGCTTGTTCTGCTTCCGTCAGGAAAAGCTGTTGTAGATTTACAGCCACAGTATGATGAAATAAAAAAGTGTCCTGGAACAAGGGGAGTAATTGTTACAGCGGTTGCTCCTCCAGAGTCTGGATATGATTTTTACAGTAGATTCTTCTGTCCTACACACGGCATCGATGAGGATCCTGTTTGTGGGAGTGCACATTGCGCCTTAGCATCATACTGGTGCAACAAGCTGGGAAAGTGTGATCTTGTTGCATATGCGGCATCACCTAGAGGGGGGACAATAAACATTCATCTGGATGAGCAGAATCAAAGGGTGCTCCTGCGAGGGAAAGCCGTGACTGTGATGGAAGGAACTGTTTTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

305

Amino Acids

32.89

Weight (kDa)

4.86

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	11 - 301	1.9e-84	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	674
AciI	CCGC	3 cut(s)	74, 656, 809
AclWI	GGATC	3 cut(s)	449, 722, 735
AcsI	RAATTY	5 cut(s)	20, 310, 345, 442, 467
AcuI	CTGAAG	1 cut(s)	501
AfiI	CCNNNNNNNGG	5 cut(s)	73, 674, 713, 737, 824
AgsI	TTSAA	5 cut(s)	58, 396, 437, 442, 472
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	8 cut(s)	53, 119, 209, 278, 356, 452, 584, 781
AluI	AGCT	8 cut(s)	53, 119, 209, 278, 356, 452, 584, 781
Alw21I	GWGCWC	2 cut(s)	748, 870
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	744
AlwI	GGATC	3 cut(s)	449, 722, 735
AlwNI	CAGNNNCTG	1 cut(s)	674
ApaLI	GTGCAC	1 cut(s)	744
ApeKI	GCWGC	4 cut(s)	71, 125, 275, 278
ApoI	RAATTY	5 cut(s)	20, 310, 345, 442, 467
AspLEI	GCGC	1 cut(s)	755
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	422, 807
BaeGI	GKGCMC	1 cut(s)	748
BamHI	GGATCC	1 cut(s)	727
BbsI	GAAGAC	2 cut(s)	99, 189
Bbv12I	GWGCWC	2 cut(s)	748, 870
BbvI	GCAGC	4 cut(s)	83, 112, 265, 287
BccI	CCATC	4 cut(s)	219, 466, 503, 889
BceAI	ACGGC	2 cut(s)	730, 869
BciT130I	CCWGG	1 cut(s)	630
BciVI	GTATCC	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	2 cut(s)	210, 819
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	5 cut(s)	72, 126, 276, 279, 810
BlsI	GCNGC	5 cut(s)	73, 127, 277, 280, 811
Bme1390I	CCNGG	2 cut(s)	68, 630
BmiI	GGNNCC	3 cut(s)	215, 366, 729
BmrFI	CCNGG	2 cut(s)	68, 630
BmsI	GCATC	6 cut(s)	25, 290, 472, 726, 770, 821
BoxI	GACNNNNGTC	1 cut(s)	542
BpiI	GAAGAC	2 cut(s)	99, 189
BpmI	CTGGAG	2 cut(s)	189, 651
Bpu10I	CCTNAGC	1 cut(s)	757
BpuMI	CCSGG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	720
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 674, 713, 737, 824
Bse1I	ACTGG	2 cut(s)	387, 773
Bse3DI	GCAATG	1 cut(s)	748
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	3 cut(s)	40, 514, 853
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	5 cut(s)	73, 674, 713, 737, 824
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	3 cut(s)	36, 234, 235
BseNI	ACTGG	2 cut(s)	387, 773
BseRI	GAGGAG	1 cut(s)	654
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	4 cut(s)	83, 112, 265, 287
BseYI	CCCAGC	1 cut(s)	781
BshVI	ATCGAT	1 cut(s)	720
BsiHKAI	GWGCWC	2 cut(s)	748, 870
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	841
BslI	CCNNNNNNNGG	5 cut(s)	73, 674, 713, 737, 824
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	841
BsmI	GAATGC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	748, 870
Bsp143I	GATC	4 cut(s)	250, 454, 727, 793
BspACI	CCGC	3 cut(s)	74, 656, 809
BspCNI	CTCAG	3 cut(s)	37, 234, 235
BspDI	ATCGAT	1 cut(s)	720
BspLI	GGNNCC	3 cut(s)	215, 366, 729
BspPI	GGATC	3 cut(s)	449, 722, 735
BsrDI	GCAATG	1 cut(s)	748
BsrI	ACTGG	2 cut(s)	387, 773
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	4 cut(s)	250, 454, 727, 793
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	5 cut(s)	544, 606, 692, 892, 907
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	4 cut(s)	45, 221, 243, 757
BstF5I	GGATG	3 cut(s)	40, 514, 853
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	4 cut(s)	253, 457, 730, 796
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	250, 454, 727, 793
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 272, 565, 752, 809
BstNI	CCWGG	1 cut(s)	630
BstPAI	GACNNNNGTC	1 cut(s)	542
BstSCI	CCNGG	2 cut(s)	66, 628
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	4 cut(s)	83, 112, 265, 287
BstV2I	GAAGAC	2 cut(s)	99, 189
BstX2I	RGATCY	1 cut(s)	727
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	727
Bsu15I	ATCGAT	1 cut(s)	720
BsuI	GTATCC	1 cut(s)	394
BsuTUI	ATCGAT	1 cut(s)	720
BtsCI	GGATG	3 cut(s)	40, 514, 853
BtsIMutI	CAGTG	4 cut(s)	42, 168, 240, 394
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	674
CfoI	GCGC	1 cut(s)	755
ClaI	ATCGAT	1 cut(s)	720
CviAII	CATG	1 cut(s)	263
DdeI	CTNAG	4 cut(s)	45, 221, 243, 757
DpnI	GATC	4 cut(s)	252, 456, 729, 795
DpnII	GATC	4 cut(s)	250, 454, 727, 793
Eco130I	CCWWGG	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	501
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	504
EcoT22I	ATGCAT	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	1 cut(s)	266
FaiI	YATR	7 cut(s)	264, 530, 609, 681, 766, 805, 807
FaqI	GGGAC	1 cut(s)	841
FatI	CATG	1 cut(s)	262
FauNDI	CATATG	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	72, 126, 276, 279, 810
FokI	GGATG	3 cut(s)	47, 521, 860
Fsp4HI	GCNGC	5 cut(s)	72, 126, 276, 279, 810
FspBI	CTAG	2 cut(s)	210, 819
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	5 cut(s)	72, 126, 276, 279, 810
GsaI	CCCAGC	1 cut(s)	785
GsuI	CTGGAG	2 cut(s)	189, 651
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	1 cut(s)	755
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HinfI	GANTC	6 cut(s)	47, 160, 422, 671, 696, 856
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	422, 807
Hpy166II	GTNNAC	2 cut(s)	231, 746
Hpy188I	TCNGA	3 cut(s)	145, 184, 224
Hpy188III	TCNNGA	6 cut(s)	342, 368, 576, 668, 675, 845
Hpy8I	GTNNAC	2 cut(s)	231, 746
HpyAV	CCTTC	1 cut(s)	893
HpyCH4III	ACNGT	5 cut(s)	544, 606, 692, 892, 907
HpyCH4V	TGCA	6 cut(s)	38, 115, 281, 746, 774, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 272, 565, 752, 809
HpyF3I	CTNAG	4 cut(s)	45, 221, 243, 757
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	753
Kzo9I	GATC	4 cut(s)	250, 454, 727, 793
LmnI	GCTCC	2 cut(s)	667, 873
Lsp1109I	GCAGC	4 cut(s)	83, 112, 265, 287
LweI	GCATC	6 cut(s)	25, 290, 472, 726, 770, 821
MaeI	CTAG	2 cut(s)	210, 819
MaeIII	GTNAC	4 cut(s)	238, 544, 649, 886
MalI	GATC	4 cut(s)	252, 456, 729, 795
MboI	GATC	4 cut(s)	250, 454, 727, 793
MboII	GAAGA	4 cut(s)	19, 104, 189, 691
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	2 cut(s)	748, 870
MluCI	AATT	8 cut(s)	20, 310, 345, 437, 442, 467, 472, 645
MlyI	GAGTC	4 cut(s)	56, 169, 416, 680
MmeI	TCCRAC	2 cut(s)	66, 339
MnlI	CCTC	7 cut(s)	82, 238, 528, 675, 718, 815, 869
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	5 cut(s)	135, 294, 350, 378, 491
MslI	CAYNNNNRTG	2 cut(s)	769, 846
MspA1I	CMGCKG	4 cut(s)	74, 278, 452, 656
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	68, 630
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	5 cut(s)	125, 272, 565, 752, 809
NciI	CCSGG	1 cut(s)	68
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	4 cut(s)	250, 454, 727, 793
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	3 cut(s)	215, 366, 729
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	3 cut(s)	238, 544, 886
NsiI	ATGCAT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	696, 856
PflMI	CCANNNNNTGG	1 cut(s)	674
PfoI	TCCNGGA	1 cut(s)	628
PkrI	GCNGC	5 cut(s)	73, 127, 277, 280, 811
PleI	GAGTC	4 cut(s)	55, 168, 416, 679
PpsI	GAGTC	4 cut(s)	55, 168, 416, 679
PshAI	GACNNNNGTC	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	3 cut(s)	215, 366, 729
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	727
PvuII	CAGCTG	2 cut(s)	278, 452
RseI	CAYNNNNRTG	2 cut(s)	769, 846
SaqAI	TTAA	5 cut(s)	135, 294, 350, 378, 491
SatI	GCNGC	5 cut(s)	72, 126, 276, 279, 810
Sau3AI	GATC	4 cut(s)	250, 454, 727, 793
SchI	GAGTC	4 cut(s)	56, 169, 416, 680
ScrFI	CCNGG	2 cut(s)	68, 630
SduI	GDGCHC	2 cut(s)	748, 870
SfaNI	GCATC	6 cut(s)	25, 290, 472, 726, 770, 821
SmiMI	CAYNNNNRTG	2 cut(s)	769, 846
Sse9I	AATT	8 cut(s)	20, 310, 345, 437, 442, 467, 472, 645
SsiI	CCGC	3 cut(s)	74, 656, 809
SspMI	CTAG	2 cut(s)	210, 819
StyD4I	CCNGG	2 cut(s)	66, 628
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	5 cut(s)	544, 606, 692, 892, 907
TaqI	TCGA	1 cut(s)	720
TasI	AATT	8 cut(s)	20, 310, 345, 437, 442, 467, 472, 645
TauI	GCSGC	1 cut(s)	812
TfiI	GAWTC	2 cut(s)	696, 856
Tru1I	TTAA	5 cut(s)	135, 294, 350, 378, 491
Tru9I	TTAA	5 cut(s)	135, 294, 350, 378, 491
TscAI	CASTG	4 cut(s)	49, 175, 247, 394
TseFI	GTSAC	3 cut(s)	238, 544, 886
TseI	GCWGC	4 cut(s)	71, 125, 275, 278
Tsp45I	GTSAC	3 cut(s)	238, 544, 886
TspDTI	ATGAA	3 cut(s)	480, 627, 830
TspGWI	ACGGA	2 cut(s)	206, 561
TspRI	CASTG	4 cut(s)	49, 175, 247, 394
Van91I	CCANNNNNTGG	1 cut(s)	674
VneI	GTGCAC	1 cut(s)	744
XapI	RAATTY	5 cut(s)	20, 310, 345, 442, 467
XspI	CTAG	2 cut(s)	210, 819
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.