Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

21667482 .. 21669202

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTTTCTTGACAAGTTGTCGGCAGGTGGGATCTTGTCGAGTCACTCTCTCTTACTTAAACTCTTTCTGGAGTGCTGCATAATCATTTCAATCTTCCTTCCAATGGCGAAGAAACCAGCCAAGTATTATGTGGTGGACGCGTTCACGGACTCGGCTTTCAAGGGGAACCCAGCAGCGGTTTGCTTGCTGGAGGAAGATAGAGACGACCAGTGGCTGCAAGCTGTGGCCTTCGAGTTCAATCTCTCCCAGACTTGTTACTTGACTCGAATCGATGACTCTCACTCAGCTCCTCGGTTCGGTCTCAGATGGTTCTCGCCTACTAATGAGGATTTCATGTGCGTAACTTTACTTAAAAAACAAACTTTATTTCCACTCGGGTATCTAAATCCGATTCCCTTTTCACAGGTTGAGCTTTGCGGTCATGGAACATTAGCTTCTTCACACACTCTCTTTAAGTCTGGTTTGATAAGTTCCGACATTATTGAGTTTTCGACTCTGTCCGGAATTTTAACAGCTAAGAAGGTTCCAGATGTTAAGACAGCCAATGGTGAAGCACAGGAGTCGTCCTATTTCATTGAACTGAACTTTCCTGCCGCCCCGTCTAATGAATTCAACTCTGATGAGGTTTCGGTTATCTCCAAGGCCTTGAACAGTGCTTGTATTATTGATATAAGGAGGGCAACTGTCACAGATGATCTACTTGTTGTGCTTCCATCAGCAAAAGCGGTTGCAGATTTACAGCCACAGCCTAATGCAATAAAAAAATGTCCCGGGTCTAGGGGAGTGCTTGCAACAGCGATTGCTCCTCCAGAGTCCGGTTATGATTTTTACAGTAGATTCTTTGCCCCTAAACACGGTGTTAATGAGGATCCTGTTTGCGGGAGCGCACATTGTGTCTTAGCATCATACTGGTGCAAAAAACTCGGAAAATCTGATGTTGTTGGATACGTGGCATCGCGTCGAGGAGGAGTTGTAAGCATTCATCTAGACGAGCAGAATCAAAGGGTGCTGCTGCGAGGGAAAGCGGTTACTGTCATGGAAGGAACTGTTTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

353

Amino Acids

38.36

Weight (kDa)

6.18

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	45 - 109	1.9e-23	Phenazine biosynthesis-like protein
PhzC-PhzF	PF02567	132 - 348	4.7e-50	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	14
AccII	CGCG	2 cut(s)	140, 958
AccIII	TCCGGA	1 cut(s)	500
AciI	CCGC	6 cut(s)	176, 417, 594, 725, 879, 1025
AclWI	GGATC	3 cut(s)	38, 863, 876
AcsI	RAATTY	2 cut(s)	504, 608
AdeI	CACNNNGTG	1 cut(s)	893
AfiI	CCNNNNNNNGG	7 cut(s)	103, 175, 296, 777, 815, 854, 878
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	6 cut(s)	90, 160, 238, 578, 613, 649
AhdI	GACNNNNNGTC	1 cut(s)	16
AluBI	AGCT	5 cut(s)	221, 287, 412, 434, 515
AluI	AGCT	5 cut(s)	221, 287, 412, 434, 515
Alw26I	GTCTC	2 cut(s)	195, 305
AlwI	GGATC	3 cut(s)	38, 863, 876
AlwNI	CAGNNNCTG	1 cut(s)	214
Ama87I	CYCGRG	2 cut(s)	374, 770
Aor13HI	TCCGGA	1 cut(s)	500
AoxI	GGCC	2 cut(s)	225, 642
ApeKI	GCWGC	5 cut(s)	75, 173, 214, 1009, 1012
ApoI	RAATTY	2 cut(s)	504, 608
AspLEI	GCGC	1 cut(s)	887
AsuC2I	CCSGG	2 cut(s)	771, 772
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	2 cut(s)	374, 770
BaeI	ACNNNNGTAYC	2 cut(s)	362, 395
BamHI	GGATCC	1 cut(s)	868
BbvI	GCAGC	5 cut(s)	62, 185, 201, 996, 999
BccI	CCATC	2 cut(s)	300, 721
BcgI	CGANNNNNNTGC	4 cut(s)	543, 577, 904, 938
BciVI	GTATCC	1 cut(s)	938
BcnI	CCSGG	2 cut(s)	771, 772
BcoDI	GTCTC	2 cut(s)	195, 305
BfaI	CTAG	2 cut(s)	777, 986
BfuAI	ACCTGC	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	938
BisI	GCNGC	6 cut(s)	76, 174, 215, 594, 1010, 1013
BlsI	GCNGC	6 cut(s)	77, 175, 216, 595, 1011, 1014
Bme1390I	CCNGG	2 cut(s)	771, 772
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmeT110I	CYCGRG	2 cut(s)	374, 770
BmiI	GGNNCC	3 cut(s)	167, 525, 870
BmrFI	CCNGG	2 cut(s)	771, 772
BmsI	GCATC	2 cut(s)	911, 962
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	3 cut(s)	89, 209, 792
BpuMI	CCSGG	2 cut(s)	771, 772
Bsa29I	ATCGAT	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	949
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	290, 639, 770
BsaWI	WCCGGW	2 cut(s)	500, 815
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bsc4I	CCNNNNNNNGG	7 cut(s)	103, 175, 296, 777, 815, 854, 878
Bse1I	ACTGG	2 cut(s)	208, 914
BseAI	TCCGGA	1 cut(s)	500
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	290, 639, 770
BseLI	CCNNNNNNNGG	7 cut(s)	103, 175, 296, 777, 815, 854, 878
BseMII	CTCAG	2 cut(s)	297, 316
BseNI	ACTGG	2 cut(s)	208, 914
BseRI	GAGGAG	4 cut(s)	279, 795, 978, 981
BseXI	GCAGC	5 cut(s)	62, 185, 201, 996, 999
BseYI	CCCAGC	1 cut(s)	169
Bsh1236I	CGCG	2 cut(s)	140, 958
BshFI	GGCC	2 cut(s)	227, 644
BshVI	ATCGAT	1 cut(s)	270
BsiHKCI	CYCGRG	2 cut(s)	374, 770
BsiSI	CCGG	3 cut(s)	501, 771, 816
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	7 cut(s)	103, 175, 296, 777, 815, 854, 878
BsmAI	GTCTC	2 cut(s)	195, 305
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	753
BsmI	GAATGC	1 cut(s)	978
BsnI	GGCC	2 cut(s)	227, 644
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	2 cut(s)	374, 770
Bsp13I	TCCGGA	1 cut(s)	500
Bsp143I	GATC	3 cut(s)	30, 694, 868
BspACI	CCGC	6 cut(s)	176, 417, 594, 725, 879, 1025
BspANI	GGCC	2 cut(s)	227, 644
BspCNI	CTCAG	2 cut(s)	296, 315
BspDI	ATCGAT	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	500
BspFNI	CGCG	2 cut(s)	140, 958
BspLI	GGNNCC	3 cut(s)	167, 525, 870
BspMI	ACCTGC	1 cut(s)	14
BspPI	GGATC	3 cut(s)	38, 863, 876
BspTNI	GGTCTC	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	208, 914
BssECI	CCNNGG	3 cut(s)	290, 639, 770
BssMI	GATC	3 cut(s)	30, 694, 868
BssT1I	CCWWGG	1 cut(s)	639
Bst4CI	ACNGT	6 cut(s)	653, 685, 833, 857, 1033, 1048
BstBAI	YACGTR	1 cut(s)	949
BstC8I	GCNNGC	3 cut(s)	185, 219, 789
BstDEI	CTNAG	4 cut(s)	283, 302, 516, 898
BstFNI	CGCG	2 cut(s)	140, 958
BstHHI	GCGC	1 cut(s)	887
BstKTI	GATC	3 cut(s)	33, 697, 871
BstMAI	GTCTC	2 cut(s)	195, 305
BstMBI	GATC	3 cut(s)	30, 694, 868
BstSCI	CCNGG	2 cut(s)	769, 770
BstUI	CGCG	2 cut(s)	140, 958
BstV1I	GCAGC	5 cut(s)	62, 185, 201, 996, 999
BstX2I	RGATCY	2 cut(s)	30, 868
BstYI	RGATCY	2 cut(s)	30, 868
Bsu15I	ATCGAT	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	938
BsuRI	GGCC	2 cut(s)	227, 644
BsuTUI	ATCGAT	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	939
BtsIMutI	CAGTG	2 cut(s)	215, 658
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	185, 219, 789
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	887
Cfr9I	CCCGGG	1 cut(s)	770
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	2 cut(s)	146, 947
CviAII	CATG	3 cut(s)	334, 422, 1036
DdeI	CTNAG	4 cut(s)	283, 302, 516, 898
DpnI	GATC	3 cut(s)	32, 696, 870
DpnII	GATC	3 cut(s)	30, 694, 868
DraIII	CACNNNGTG	1 cut(s)	893
DriI	GACNNNNNGTC	1 cut(s)	16
Eam1105I	GACNNNNNGTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	639
Eco147I	AGGCCT	1 cut(s)	644
Eco31I	GGTCTC	1 cut(s)	305
Eco88I	CYCGRG	2 cut(s)	374, 770
EcoRI	GAATTC	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	3 cut(s)	337, 425, 1039
FaiI	YATR	8 cut(s)	80, 129, 335, 423, 671, 822, 907, 1037
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	3 cut(s)	333, 421, 1035
FauI	CCCGC	1 cut(s)	872
Fnu4HI	GCNGC	6 cut(s)	76, 174, 215, 594, 1010, 1013
Fsp4HI	GCNGC	6 cut(s)	76, 174, 215, 594, 1010, 1013
FspBI	CTAG	2 cut(s)	777, 986
GlaI	GCGC	1 cut(s)	886
GluI	GCNGC	6 cut(s)	76, 174, 215, 594, 1010, 1013
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	3 cut(s)	89, 209, 792
HaeIII	GGCC	2 cut(s)	227, 644
HapII	CCGG	3 cut(s)	501, 771, 816
HgaI	GACGC	2 cut(s)	146, 947
HhaI	GCGC	1 cut(s)	887
Hin1II	CATG	3 cut(s)	337, 425, 1039
Hin6I	GCGC	1 cut(s)	885
HinP1I	GCGC	1 cut(s)	885
HpaII	CCGG	3 cut(s)	501, 771, 816
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	136, 144
Hpy188I	TCNGA	6 cut(s)	305, 390, 475, 619, 926, 934
Hpy188III	TCNNGA	6 cut(s)	8, 68, 501, 527, 809, 986
Hpy8I	GTNNAC	2 cut(s)	136, 144
Hpy99I	CGWCG	1 cut(s)	963
HpyAV	CCTTC	4 cut(s)	107, 238, 514, 1034
HpyCH4III	ACNGT	6 cut(s)	653, 685, 833, 857, 1033, 1048
HpyCH4IV	ACGT	1 cut(s)	948
HpyCH4V	TGCA	6 cut(s)	78, 217, 731, 755, 791, 915
HpyF3I	CTNAG	4 cut(s)	283, 302, 516, 898
HpySE526I	ACGT	1 cut(s)	948
Hsp92II	CATG	3 cut(s)	337, 425, 1039
HspAI	GCGC	1 cut(s)	885
Kpn2I	TCCGGA	1 cut(s)	500
Kzo9I	GATC	3 cut(s)	30, 694, 868
LmnI	GCTCC	3 cut(s)	292, 808, 882
Lsp1109I	GCAGC	5 cut(s)	62, 185, 201, 996, 999
LweI	GCATC	2 cut(s)	911, 962
MaeI	CTAG	2 cut(s)	777, 986
MaeII	ACGT	1 cut(s)	948
MaeIII	GTNAC	5 cut(s)	41, 254, 340, 685, 1027
MalI	GATC	3 cut(s)	32, 696, 870
MboI	GATC	3 cut(s)	30, 694, 868
MboII	GAAGA	4 cut(s)	85, 121, 206, 429
MflI	RGATCY	2 cut(s)	30, 868
MluCI	AATT	2 cut(s)	504, 608
MluI	ACGCGT	1 cut(s)	138
MlyI	GAGTC	7 cut(s)	49, 143, 256, 269, 487, 569, 821
MmeI	TCCRAC	2 cut(s)	498, 922
MroI	TCCGGA	1 cut(s)	500
MseI	TTAA	6 cut(s)	57, 351, 453, 509, 534, 861
MslI	CAYNNNNRTG	1 cut(s)	910
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	3 cut(s)	501, 771, 816
MspR9I	CCNGG	2 cut(s)	771, 772
Mva1269I	GAATGC	1 cut(s)	978
MvnI	CGCG	2 cut(s)	140, 958
NciI	CCSGG	2 cut(s)	771, 772
NdeII	GATC	3 cut(s)	30, 694, 868
NlaIII	CATG	3 cut(s)	337, 425, 1039
NlaIV	GGNNCC	3 cut(s)	167, 525, 870
NmeAIII	GCCGAG	1 cut(s)	131
NmuCI	GTSAC	2 cut(s)	41, 685
PaqCI	CACCTGC	1 cut(s)	14
PceI	AGGCCT	1 cut(s)	644
PctI	GAATGC	1 cut(s)	978
PfeI	GAWTC	4 cut(s)	267, 391, 837, 997
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	6 cut(s)	77, 175, 216, 595, 1011, 1014
PleI	GAGTC	7 cut(s)	48, 143, 256, 269, 487, 568, 820
PpsI	GAGTC	7 cut(s)	48, 143, 256, 269, 487, 568, 820
Ppu21I	YACGTR	1 cut(s)	949
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	167, 525, 870
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	30, 868
PsyI	GACNNNGTC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	910
SaqAI	TTAA	6 cut(s)	57, 351, 453, 509, 534, 861
SatI	GCNGC	6 cut(s)	76, 174, 215, 594, 1010, 1013
Sau3AI	GATC	3 cut(s)	30, 694, 868
SchI	GAGTC	7 cut(s)	49, 143, 256, 269, 487, 569, 821
ScrFI	CCNGG	2 cut(s)	771, 772
SfaNI	GCATC	2 cut(s)	911, 962
SmaI	CCCGGG	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	910
Sse9I	AATT	2 cut(s)	504, 608
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	6 cut(s)	176, 417, 594, 725, 879, 1025
SspMI	CTAG	2 cut(s)	777, 986
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	769, 770
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	6 cut(s)	653, 685, 833, 857, 1033, 1048
TaiI	ACGT	1 cut(s)	951
TaqI	TCGA	6 cut(s)	38, 231, 265, 270, 491, 961
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	504, 608
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	4 cut(s)	267, 391, 837, 997
Tru1I	TTAA	6 cut(s)	57, 351, 453, 509, 534, 861
Tru9I	TTAA	6 cut(s)	57, 351, 453, 509, 534, 861
TscAI	CASTG	2 cut(s)	215, 658
TseFI	GTSAC	2 cut(s)	41, 685
TseI	GCWGC	5 cut(s)	75, 173, 214, 1009, 1012
Tsp45I	GTSAC	2 cut(s)	41, 685
TspDTI	ATGAA	4 cut(s)	322, 562, 621, 971
TspGWI	ACGGA	1 cut(s)	161
TspMI	CCCGGG	1 cut(s)	770
TspRI	CASTG	2 cut(s)	215, 658
Tth111I	GACNNNGTC	1 cut(s)	496
XapI	RAATTY	2 cut(s)	504, 608
XbaI	TCTAGA	1 cut(s)	985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmaI	CCCGGG	1 cut(s)	770
XspI	CTAG	2 cut(s)	777, 986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.