RchiOBHm_Chr6g0291351

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001362
Physical Location & Seq
Reverse (-)
54536100 .. 54537735
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26141

Sequence Viewer

Length: 798 bp
ATGCAAGCTCTGGCCACGGAGTTCAATCTCTCTCAGACAGGTTACTTGACTCGCCTCAATGGCTCGGACCACTCGCCTTCTTTGACTTCCACACCAAGGTTCAAACTCAGATGGTTTACTCCTGTTACAGAGGTTAAGCTTTGTGGTCATGCAACATTAGCGGCTGCTTATACCCTGTTTATGTCTGGTTTGATTGATTCCGACGTTATTGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCATGTTAAGGCAGCCAACGGTTCACATTTAAAAAATGGTGAAGCACGAGATAACTATTTTATTGAACTGAATTTTCCTGCTGACCCATCTTCTGAATTCAATTCTGCTGAGGTTTCGTTTATTTCCAACGCCTTGGGGGGTGCTCCTGTGGTTGAAATAATGAGGACAGTTGCAGATAATCTACTTGTGGTGCTTGCATCTGGAAAGACTGTTGCAGATTTGTTGCCACAGTTAGATGCAATTGAAAAATGTCCAGGTACTGGAGTGATTGTAACAGGAGTTGCTCCTCCAGAGTCTGGATTTGATTTTATCAGTAGATTCTTCTGCCCGAAATTCGGGATCAATGAGGATCCTGTTTGTGGGAGTGCACATTGTGGCTTAGCACCATACTGGTGCAAGAAACTGGGAAAGTGTGATGTTGTTGCATGTCAGGCATCACCTAGAGGGGGAACACTGTACATTCATCTGGATGAGAAAAATCAAAGGGTGCTACTCCGAGGGAAGGCGGTTACTGTGATGGAAGGAACTGTTCTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

265

Amino Acids

28.38

Weight (kDa)

6.07

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 1 - 261 4e-67 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 518, 554
AciI CCGC 2 cut(s) 161, 764
AclWI GGATC 3 cut(s) 602, 605, 615
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 4 cut(s) 231, 328, 353, 590
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 2 cut(s) 517, 716
AfiI CCNNNNNNNGG 7 cut(s) 96, 518, 554, 593, 617, 704, 760
AgsI TTSAA 6 cut(s) 25, 103, 323, 358, 413, 503
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 3 cut(s) 8, 139, 242
AluI AGCT 3 cut(s) 8, 139, 242
Alw21I GWGCWC 2 cut(s) 403, 628
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 3 cut(s) 602, 605, 615
AlwNI CAGNNNCTG 2 cut(s) 518, 554
AoxI GGCC 1 cut(s) 12
ApaLI GTGCAC 1 cut(s) 624
ApeKI GCWGC 2 cut(s) 164, 269
ApoI RAATTY 4 cut(s) 231, 328, 353, 590
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 308, 687
AvaII GGWCC 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 628
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BalI TGGCCA 1 cut(s) 14
BamHI GGATCC 1 cut(s) 607
BauI CACGAG 1 cut(s) 303
Bbv12I GWGCWC 2 cut(s) 403, 628
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 151, 281
BccI CCATC 3 cut(s) 105, 352, 769
BciT130I CCWGG 1 cut(s) 513
BfaI CTAG 2 cut(s) 699, 791
BglI GCCNNNNNGGC 1 cut(s) 60
BisI GCNGC 3 cut(s) 162, 165, 270
BlpI GCTNAGC 1 cut(s) 637
BlsI GCNGC 3 cut(s) 163, 166, 271
Bme1390I CCNGG 1 cut(s) 513
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 609
BmrFI CCNGG 1 cut(s) 513
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 3 cut(s) 464, 484, 701
BmuI ACTGGG 1 cut(s) 671
BpmI CTGGAG 2 cut(s) 531, 540
Bpu10I CCTNAGC 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 637
BsaJI CCNNGG 4 cut(s) 15, 95, 390, 754
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 7 cut(s) 96, 518, 554, 593, 617, 704, 760
Bse1I ACTGG 3 cut(s) 523, 653, 666
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 4 cut(s) 15, 95, 390, 754
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 7 cut(s) 96, 518, 554, 593, 617, 704, 760
BseMII CTCAG 3 cut(s) 47, 121, 357
BseNI ACTGG 3 cut(s) 523, 653, 666
BseRI GAGGAG 1 cut(s) 534
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 2 cut(s) 151, 281
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 2 cut(s) 403, 628
BslI CCNNNNNNNGG 7 cut(s) 96, 518, 554, 593, 617, 704, 760
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 403, 628
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 3 cut(s) 256, 597, 607
Bsp1720I GCTNAGC 1 cut(s) 637
BspACI CCGC 2 cut(s) 161, 764
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 3 cut(s) 46, 120, 358
BspLI GGNNCC 1 cut(s) 609
BspPI GGATC 3 cut(s) 602, 605, 615
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 3 cut(s) 523, 653, 666
BssECI CCNNGG 4 cut(s) 15, 95, 390, 754
BssMI GATC 3 cut(s) 256, 597, 607
BssSI CACGAG 1 cut(s) 303
BssT1I CCWWGG 2 cut(s) 95, 390
Bst2BI CACGAG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 7 cut(s) 278, 427, 469, 489, 714, 772, 787
BstAUI TGTACA 1 cut(s) 714
BstC8I GCNNGC 2 cut(s) 6, 453
BstDEI CTNAG 4 cut(s) 33, 107, 366, 637
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 733
BstKTI GATC 3 cut(s) 259, 600, 610
BstMBI GATC 3 cut(s) 256, 597, 607
BstMWI GCNNNNNNNGC 3 cut(s) 60, 158, 689
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 511
BstSLI GKGCMC 1 cut(s) 628
BstV1I GCAGC 2 cut(s) 151, 281
BstX2I RGATCY 1 cut(s) 607
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 1 cut(s) 710
Cac8I GCNNGC 2 cut(s) 6, 453
CaiI CAGNNNCTG 2 cut(s) 518, 554
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 516, 715
CviAII CATG 3 cut(s) 149, 260, 684
CviJI RGCY 8 cut(s) 8, 14, 63, 139, 164, 242, 272, 636
CviKI_1 RGCY 8 cut(s) 8, 14, 63, 139, 164, 242, 272, 636
CviQI GTAC 2 cut(s) 516, 715
DdeI CTNAG 4 cut(s) 33, 107, 366, 637
DpnI GATC 3 cut(s) 258, 599, 609
DpnII GATC 3 cut(s) 256, 597, 607
DraI TTTAAA 1 cut(s) 288
DraIII CACNNNGTG 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 12
Eco130I CCWWGG 2 cut(s) 95, 390
Eco47I GGWCC 1 cut(s) 67
EcoRI GAATTC 2 cut(s) 231, 353
EcoRII CCWGG 1 cut(s) 511
EcoT14I CCWWGG 2 cut(s) 95, 390
ErhI CCWWGG 2 cut(s) 95, 390
FaeI CATG 3 cut(s) 152, 263, 687
FaiI YATR 6 cut(s) 150, 171, 182, 261, 646, 685
FatI CATG 3 cut(s) 148, 259, 683
Fnu4HI GCNGC 3 cut(s) 162, 165, 270
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 3 cut(s) 162, 165, 270
FspBI CTAG 2 cut(s) 699, 791
GluI GCNGC 3 cut(s) 162, 165, 270
GsuI CTGGAG 2 cut(s) 531, 540
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 3 cut(s) 152, 263, 687
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 4 cut(s) 49, 197, 551, 576
HphI GGTGA 2 cut(s) 308, 687
Hpy166II GTNNAC 3 cut(s) 117, 281, 626
Hpy188I TCNGA 6 cut(s) 36, 67, 110, 202, 352, 755
Hpy188III TCNNGA 6 cut(s) 228, 459, 548, 555, 595, 725
Hpy8I GTNNAC 3 cut(s) 117, 281, 626
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 3 cut(s) 87, 754, 773
HpyCH4III ACNGT 7 cut(s) 278, 427, 469, 489, 714, 772, 787
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 9 cut(s) 4, 152, 431, 455, 473, 497, 626, 654, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 158, 689
HpyF3I CTNAG 4 cut(s) 33, 107, 366, 637
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 3 cut(s) 152, 263, 687
Kzo9I GATC 3 cut(s) 256, 597, 607
LmnI GCTCC 2 cut(s) 406, 547
Lsp1109I GCAGC 2 cut(s) 151, 281
LweI GCATC 3 cut(s) 464, 484, 701
MaeI CTAG 2 cut(s) 699, 791
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 4 cut(s) 41, 124, 529, 766
MalI GATC 3 cut(s) 258, 599, 609
MboI GATC 3 cut(s) 256, 597, 607
MboII GAAGA 2 cut(s) 339, 571
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 2 cut(s) 403, 628
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 6 cut(s) 231, 328, 353, 358, 498, 590
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 2 cut(s) 43, 560
MmeI TCCRAC 2 cut(s) 225, 408
MnlI CCTC 8 cut(s) 65, 124, 361, 414, 555, 598, 695, 749
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
MseI TTAA 3 cut(s) 135, 264, 287
MslI CAYNNNNRTG 2 cut(s) 649, 726
Msp20I TGGCCA 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 513
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 3 cut(s) 60, 158, 689
NdeII GATC 3 cut(s) 256, 597, 607
NlaIII CATG 3 cut(s) 152, 263, 687
NlaIV GGNNCC 1 cut(s) 609
NspI RCATGY 1 cut(s) 687
PfeI GAWTC 2 cut(s) 197, 576
PflFI GACNNNGTC 1 cut(s) 223
PflMI CCANNNNNTGG 2 cut(s) 518, 554
PkrI GCNGC 3 cut(s) 163, 166, 271
PleI GAGTC 2 cut(s) 43, 559
PpsI GAGTC 2 cut(s) 43, 559
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 609
PspPI GGNCC 1 cut(s) 67
PstNI CAGNNNCTG 2 cut(s) 518, 554
PsuI RGATCY 1 cut(s) 607
PsyI GACNNNGTC 1 cut(s) 223
RsaI GTAC 2 cut(s) 517, 716
RsaNI GTAC 2 cut(s) 516, 715
RseI CAYNNNNRTG 2 cut(s) 649, 726
SaqAI TTAA 3 cut(s) 135, 264, 287
SatI GCNGC 3 cut(s) 162, 165, 270
Sau3AI GATC 3 cut(s) 256, 597, 607
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 43, 560
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 2 cut(s) 403, 628
SfaNI GCATC 3 cut(s) 464, 484, 701
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 649, 726
Sse9I AATT 6 cut(s) 231, 328, 353, 358, 498, 590
SsiI CCGC 2 cut(s) 161, 764
SspMI CTAG 2 cut(s) 699, 791
StyD4I CCNGG 1 cut(s) 511
StyI CCWWGG 2 cut(s) 95, 390
TaaI ACNGT 7 cut(s) 278, 427, 469, 489, 714, 772, 787
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 218
TasI AATT 6 cut(s) 231, 328, 353, 358, 498, 590
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 197, 576
Tru1I TTAA 3 cut(s) 135, 264, 287
Tru9I TTAA 3 cut(s) 135, 264, 287
TscAI CASTG 1 cut(s) 717
TseI GCWGC 2 cut(s) 164, 269
TspDTI ATGAA 1 cut(s) 710
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 717
Tth111I GACNNNGTC 1 cut(s) 223
Van91I CCANNNNNTGG 2 cut(s) 518, 554
VneI GTGCAC 1 cut(s) 624
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 4 cut(s) 231, 328, 353, 590
XceI RCATGY 1 cut(s) 687
XspI CTAG 2 cut(s) 699, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.