Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003735.1

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

70188 .. 71913

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003735.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggcaaagaaaccggtgaaatactctgtggtggatgctttcaccgactcagctttcaaggggaatccagcagcagtttgcttgctagaggaagacagagatgatcaatggatgcaagctctggccgcggagttcaatctctctgagacaggttacttgactcgcctcaatggctcggaccactcgccttctttgacttccacaccaaggttcagtctcagatggtttactcctgttgcagaggttgagctttgtggtcatgtaacattagcggctgcttataccctgtttatgtctggtttgattgattccgacgttattgagttttcgaccttgtctggaattctaacagctaaaaaggttgtagatcaagttaaggcagccaacggttcacatttaaaaaatggtgaagcacaagataactattttattgaactgaattttcctgctgacccatcttctgaattcaattctgctgaggtttcgtttatttccaacgccttggggggtgctcctgtggttgaaataatgaggacagttgcagataatctccttgtggtgcttccatctggaaagactgttgcagatttgttgccacagtttgatgcaatcgaaaaatgtccaggtagtggagtgattgtaacaggagttgctccgccagagtctggatttgattttatcagtagattcttctgcccgaaattcgggatcagtgaggatgctgttactgggagtgcacattgtggcttagcaccatactggtgcaagaaactgggaaagtgtgatgttgttgcgtatcaggcgtcacctagagggggaacactaaacattcgtctggatgagaaaaatcaaagggtgctactccgagggaaggcggttactgtgatggaaggaactgttctagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

302

Amino Acids

32.42

Weight (kDa)

5.02

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	629, 665
AccII	CGCG	1 cut(s)	128
AciI	CCGC	5 cut(s)	126, 128, 272, 656, 875
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	4 cut(s)	342, 439, 464, 701
AcyI	GRCGYC	1 cut(s)	803
AdeI	CACNNNGTG	1 cut(s)	743
AfiI	CCNNNNNNNGG	6 cut(s)	207, 629, 665, 704, 815, 871
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	5 cut(s)	58, 136, 434, 469, 524
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	4 cut(s)	53, 119, 250, 353
AluI	AGCT	4 cut(s)	53, 119, 250, 353
Alw21I	GWGCWC	2 cut(s)	514, 739
Alw26I	GTCTC	2 cut(s)	140, 221
Alw44I	GTGCAC	1 cut(s)	735
AlwI	GGATC	1 cut(s)	716
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	1 cut(s)	123
ApaLI	GTGCAC	1 cut(s)	735
ApeKI	GCWGC	3 cut(s)	71, 275, 380
ApoI	RAATTY	4 cut(s)	342, 439, 464, 701
AsiGI	ACCGGT	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	28, 34, 419, 798
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	739
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	514, 739
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	3 cut(s)	83, 262, 392
BccI	CCATC	4 cut(s)	216, 463, 574, 880
BciT130I	CCWGG	1 cut(s)	624
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	140, 221
BfaI	CTAG	3 cut(s)	86, 810, 902
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
BlpI	GCTNAGC	1 cut(s)	748
BlsI	GCNGC	5 cut(s)	73, 127, 274, 277, 382
Bme1390I	CCNGG	1 cut(s)	624
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	624
BmrI	ACTGGG	2 cut(s)	738, 782
BmsI	GCATC	4 cut(s)	25, 102, 595, 709
BmuI	ACTGGG	2 cut(s)	738, 782
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	748
BsaHI	GRCGYC	1 cut(s)	803
BsaJI	CCNNGG	4 cut(s)	126, 206, 501, 865
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	6 cut(s)	207, 629, 665, 704, 815, 871
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	3 cut(s)	733, 764, 777
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	4 cut(s)	126, 206, 501, 865
BseGI	GGATG	4 cut(s)	40, 117, 724, 844
BseLI	CCNNNNNNNGG	6 cut(s)	207, 629, 665, 704, 815, 871
BseMII	CTCAG	4 cut(s)	63, 135, 232, 468
BseNI	ACTGG	3 cut(s)	733, 764, 777
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	3 cut(s)	83, 262, 392
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	514, 739
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	6 cut(s)	207, 629, 665, 704, 815, 871
BsmAI	GTCTC	2 cut(s)	140, 221
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	514, 739
Bsp143I	GATC	3 cut(s)	103, 367, 708
Bsp1720I	GCTNAGC	1 cut(s)	748
BspACI	CCGC	5 cut(s)	126, 128, 272, 656, 875
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	4 cut(s)	62, 136, 231, 469
BspFNI	CGCG	1 cut(s)	128
BspPI	GGATC	1 cut(s)	716
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	733, 764, 777
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	4 cut(s)	126, 206, 501, 865
BssMI	GATC	3 cut(s)	103, 367, 708
BssNI	GRCGYC	1 cut(s)	803
BssT1I	CCWWGG	2 cut(s)	206, 501
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	6 cut(s)	389, 538, 580, 600, 883, 898
BstACI	GRCGYC	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	83, 117
BstDEI	CTNAG	5 cut(s)	49, 144, 218, 477, 748
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	4 cut(s)	40, 117, 724, 844
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	3 cut(s)	106, 370, 711
BstMAI	GTCTC	2 cut(s)	140, 221
BstMBI	GATC	3 cut(s)	103, 367, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 171, 800
BstNI	CCWGG	1 cut(s)	624
BstSCI	CCNGG	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	83, 262, 392
BstV2I	GAAGAC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	4 cut(s)	40, 117, 724, 844
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	83, 117
CaiI	CAGNNNCTG	1 cut(s)	665
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	178
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	792
CspAI	ACCGGT	1 cut(s)	13
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	9 cut(s)	53, 119, 125, 174, 250, 275, 353, 383, 747
CviKI_1	RGCY	9 cut(s)	53, 119, 125, 174, 250, 275, 353, 383, 747
DdeI	CTNAG	5 cut(s)	49, 144, 218, 477, 748
DpnI	GATC	3 cut(s)	105, 369, 710
DpnII	GATC	3 cut(s)	103, 367, 708
DraI	TTTAAA	1 cut(s)	399
DraIII	CACNNNGTG	1 cut(s)	743
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	206, 501
Eco47I	GGWCC	1 cut(s)	178
EcoRI	GAATTC	2 cut(s)	342, 464
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	2 cut(s)	206, 501
ErhI	CCWWGG	2 cut(s)	206, 501
FaeI	CATG	1 cut(s)	263
FaiI	YATR	4 cut(s)	261, 282, 293, 757
FatI	CATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
FokI	GGATG	4 cut(s)	47, 124, 731, 851
Fsp4HI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
FspBI	CTAG	3 cut(s)	86, 810, 902
GluI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	792
Hin1I	GRCGYC	1 cut(s)	803
Hin1II	CATG	1 cut(s)	263
HinfI	GANTC	6 cut(s)	47, 64, 160, 308, 662, 687
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	4 cut(s)	28, 34, 419, 798
Hpy166II	GTNNAC	3 cut(s)	228, 392, 737
Hpy188I	TCNGA	6 cut(s)	145, 178, 221, 313, 463, 866
Hpy188III	TCNNGA	5 cut(s)	339, 570, 666, 706, 836
Hpy8I	GTNNAC	3 cut(s)	228, 392, 737
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	198, 865, 884
HpyCH4III	ACNGT	6 cut(s)	389, 538, 580, 600, 883, 898
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	7 cut(s)	115, 239, 542, 584, 608, 737, 765
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 171, 800
HpyF3I	CTNAG	5 cut(s)	49, 144, 218, 477, 748
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	803
Hsp92II	CATG	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	103, 367, 708
LmnI	GCTCC	2 cut(s)	517, 658
Lsp1109I	GCAGC	3 cut(s)	83, 262, 392
LweI	GCATC	4 cut(s)	25, 102, 595, 709
MaeI	CTAG	3 cut(s)	86, 810, 902
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	6 cut(s)	152, 262, 640, 724, 804, 877
MalI	GATC	3 cut(s)	105, 369, 710
MboI	GATC	3 cut(s)	103, 367, 708
MboII	GAAGA	3 cut(s)	104, 450, 682
MhlI	GDGCHC	2 cut(s)	514, 739
MluCI	AATT	5 cut(s)	342, 439, 464, 469, 701
MlyI	GAGTC	3 cut(s)	41, 154, 671
MmeI	TCCRAC	2 cut(s)	336, 519
MnlI	CCTC	8 cut(s)	82, 176, 235, 472, 525, 709, 806, 860
MseI	TTAA	2 cut(s)	375, 398
MslI	CAYNNNNRTG	1 cut(s)	760
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	125, 171, 800
NdeII	GATC	3 cut(s)	103, 367, 708
NlaIII	CATG	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	804
PfeI	GAWTC	3 cut(s)	64, 308, 687
PflFI	GACNNNGTC	1 cut(s)	334
PflMI	CCANNNNNTGG	2 cut(s)	629, 665
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	5 cut(s)	73, 127, 274, 277, 382
PleI	GAGTC	3 cut(s)	41, 154, 670
PpsI	GAGTC	3 cut(s)	41, 154, 670
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	665
PsyI	GACNNNGTC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	760
SacII	CCGCGG	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	375, 398
SatI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
Sau3AI	GATC	3 cut(s)	103, 367, 708
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	3 cut(s)	41, 154, 671
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	2 cut(s)	514, 739
SfaNI	GCATC	4 cut(s)	25, 102, 595, 709
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	760
Sse9I	AATT	5 cut(s)	342, 439, 464, 469, 701
SsiI	CCGC	5 cut(s)	126, 128, 272, 656, 875
SspMI	CTAG	3 cut(s)	86, 810, 902
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	2 cut(s)	206, 501
TaaI	ACNGT	6 cut(s)	389, 538, 580, 600, 883, 898
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	329, 612
TasI	AATT	5 cut(s)	342, 439, 464, 469, 701
TauI	GCSGC	2 cut(s)	128, 275
TfiI	GAWTC	3 cut(s)	64, 308, 687
Tru1I	TTAA	2 cut(s)	375, 398
Tru9I	TTAA	2 cut(s)	375, 398
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	804
TseI	GCWGC	3 cut(s)	71, 275, 380
Tsp45I	GTSAC	1 cut(s)	804
TspRI	CASTG	1 cut(s)	718
Tth111I	GACNNNGTC	1 cut(s)	334
Van91I	CCANNNNNTGG	2 cut(s)	629, 665
VneI	GTGCAC	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	4 cut(s)	342, 439, 464, 701
XspI	CTAG	3 cut(s)	86, 810, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.