Rorug06G0107500

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001362
Physical Location & Seq
Reverse (-)
14604379 .. 14605125
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0107500.1

Sequence Viewer

Length: 342 bp
ATGAATGCTGCAAGAATCAAGGCATATATATGGGAGGAGCTGGCTACGCTAGCGGGAAATCCCATTATTATTGACCAAAAATACTGCAACGGTACCGGTGCTAAAAACTGTCCGCCAGCGGCAGGAGCAGTGAAAGTGAGTGATGTGTCATTTACTGGTTTCCATGGAACTTCAGCGGTTGAGCAAGCGATAACATTGGATTGCTCTAATTTGGGTTGCACTAACATTATAATGGATCATGTCAACATAACCTCAGCTGTGCCTGGAAAGCCACTCCGAGGTATATGCAACGATGCCAAAGGAAAATCAAGCCTTACTATACACCTGATGTTCCTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

113

Amino Acids

11.85

Weight (kDa)

7.65

Isoelectric Point (pI)

20.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 13 - 90 4.2e-14 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
Acc65I GGTACC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 4 cut(s) 53, 113, 119, 176
AclWI GGATC 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 122, 278
AgeI ACCGGT 1 cut(s) 95
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 2 cut(s) 40, 257
AluI AGCT 2 cut(s) 40, 257
AlwI GGATC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 8
AsiGI ACCGGT 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 92
AsuNHI GCTAGC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 92
BbvCI CCTCAGC 1 cut(s) 253
BcgI CGANNNNNNTGC 2 cut(s) 267, 301
BciT130I CCWGG 1 cut(s) 264
BfaI CTAG 2 cut(s) 50, 340
BisI GCNGC 2 cut(s) 9, 120
BlsI GCNGC 2 cut(s) 10, 121
Bme1390I CCNGG 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 283
BmtI GCTAGC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 163, 277
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 278
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 163, 277
BseLI CCNNNNNNNGG 2 cut(s) 122, 278
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 92
BshTI ACCGGT 1 cut(s) 95
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 122, 278
BsmI GAATGC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 235
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 4 cut(s) 53, 113, 119, 176
BspCNI CTCAG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 94
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 163, 277
BssMI GATC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 92, 110
BstC8I GCNNGC 4 cut(s) 42, 51, 117, 186
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 163
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 46, 50, 125, 268
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 4 cut(s) 42, 51, 117, 186
Cfr10I RCCGGY 1 cut(s) 95
Csp6I GTAC 1 cut(s) 93
CspAI ACCGGT 1 cut(s) 95
CviAII CATG 2 cut(s) 164, 239
CviJI RGCY 5 cut(s) 40, 44, 257, 271, 312
CviKI_1 RGCY 5 cut(s) 40, 44, 257, 271, 312
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 1 cut(s) 253
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EciI GGCGGA 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 167, 242
FatI CATG 2 cut(s) 163, 238
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 9, 120
Fsp4HI GCNGC 2 cut(s) 9, 120
FspBI CTAG 2 cut(s) 50, 340
GluI GCNGC 2 cut(s) 9, 120
HapII CCGG 1 cut(s) 96
Hin1II CATG 2 cut(s) 167, 242
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 15
HpaII CCGG 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 92, 110
HpyCH4V TGCA 4 cut(s) 11, 87, 219, 288
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 50, 125, 268
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 2 cut(s) 167, 242
KpnI GGTACC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 37, 125
LpnPI CCDG 8 cut(s) 26, 108, 109, 129, 141, 249, 276, 338
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 50, 340
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MluCI AATT 1 cut(s) 208
MnlI CCTC 3 cut(s) 28, 262, 272
MslI CAYNNNNRTG 2 cut(s) 28, 230
MspA1I CMGCKG 3 cut(s) 119, 176, 257
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 4 cut(s) 46, 50, 125, 268
NcoI CCATGG 1 cut(s) 163
NdeII GATC 1 cut(s) 235
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 2 cut(s) 167, 242
NlaIV GGNNCC 1 cut(s) 94
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 15
PinAI ACCGGT 1 cut(s) 95
PkrI GCNGC 2 cut(s) 10, 121
PsiI TTATAA 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 2 cut(s) 28, 230
SatI GCNGC 2 cut(s) 9, 120
Sau3AI GATC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 264
SetI ASST 5 cut(s) 42, 254, 259, 283, 327
SfaNI GCATC 1 cut(s) 283
SmiMI CAYNNNNRTG 2 cut(s) 28, 230
Sse9I AATT 1 cut(s) 208
SsiI CCGC 4 cut(s) 53, 113, 119, 176
SspMI CTAG 2 cut(s) 50, 340
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 92, 110
TasI AATT 1 cut(s) 208
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 1 cut(s) 135
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 135
XspI CTAG 2 cut(s) 50, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.