Rorug06G0107600

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001362
Physical Location & Seq
Reverse (-)
14628796 .. 14630065
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0107600.1

Sequence Viewer

Length: 474 bp
ATGGAAGGCAAAGGTTTCACAGAAGAGCAGGAAGCACTGGTGGTGAAGTCCTGGGCTGTAATGAAGAAGAATTCTGCTGAATTGGGTCTACAATTCTTCTTGAAGATCTTTGAAATTGCACCATCAGCTCAGAAGCTGTTTTCATTCTTGAAGGACTCAGATATTCCTCTGGAGAAGAACCCCAAACTCAAGCCGCATGCTATGTCTGTCTTTGTTATGACTTGTGAATCGGCAGTTCAACTCCGTAAAGCAGGCAAAGTTACAGTGAGGGAATCAACGTTGAAAAGGTTAGGTGGAGTGCATTTCAAGTCCGGAGTAGTGGATGAACATTATGAGGTGACCAAGTTTGCATTGTTGGAAACCATAAAAGAAGCAGTACCAGAGATGTGGTCACCAGAGATGAAGAGTGCATGGGGAGAAGCTTATGATCAGTTGGTTGCTGCTATCAAATCGGAAATGAAGCCCTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

157

Amino Acids

17.57

Weight (kDa)

7.8

Isoelectric Point (pI)

29.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Globin PF00042 31 - 149 5.2e-21 Globin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 311
AciI CCGC 1 cut(s) 194
AclI AACGTT 1 cut(s) 278
AcsI RAATTY 1 cut(s) 70
AfaI GTAC 1 cut(s) 378
AgsI TTSAA 6 cut(s) 103, 113, 151, 239, 283, 307
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 3 cut(s) 128, 136, 422
AluI AGCT 3 cut(s) 128, 136, 422
AlwNI CAGNNNCTG 1 cut(s) 136
Aor13HI TCCGGA 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 55, 349, 384
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 52
BclI TGATCA 1 cut(s) 427
BglII AGATCT 1 cut(s) 105
BisI GCNGC 2 cut(s) 194, 441
BlsI GCNGC 2 cut(s) 195, 442
Bme1390I CCNGG 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 311
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 328
BseMII CTCAG 2 cut(s) 143, 171
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 427
BsiSI CCGG 1 cut(s) 312
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 2 cut(s) 105, 427
BspACI CCGC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 142, 170
BspEI TCCGGA 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 105, 427
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 18, 398
BstC8I GCNNGC 2 cut(s) 198, 253
BstDEI CTNAG 3 cut(s) 129, 157, 471
BstEII GGTNACC 2 cut(s) 337, 390
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 2 cut(s) 108, 430
BstMBI GATC 2 cut(s) 105, 427
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 200
BstPI GGTNACC 2 cut(s) 337, 390
BstSCI CCNGG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 387
BstYI RGATCY 1 cut(s) 105
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 35, 270
Cac8I GCNNGC 2 cut(s) 198, 253
CaiI CAGNNNCTG 1 cut(s) 136
Csp6I GTAC 1 cut(s) 377
CviAII CATG 2 cut(s) 197, 411
CviJI RGCY 6 cut(s) 56, 128, 136, 193, 422, 463
CviKI_1 RGCY 6 cut(s) 56, 128, 136, 193, 422, 463
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 3 cut(s) 129, 157, 471
DpnI GATC 2 cut(s) 107, 429
DpnII GATC 2 cut(s) 105, 427
Eam1104I CTCTTC 2 cut(s) 18, 398
EarI CTCTTC 2 cut(s) 18, 398
Eco91I GGTNACC 2 cut(s) 337, 390
EcoO65I GGTNACC 2 cut(s) 337, 390
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 50
FaeI CATG 2 cut(s) 200, 414
FaiI YATR 7 cut(s) 198, 203, 218, 333, 365, 412, 426
FatI CATG 2 cut(s) 196, 410
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 194, 441
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 194, 441
GluI GCNGC 2 cut(s) 194, 441
GsuI CTGGAG 1 cut(s) 191
HapII CCGG 1 cut(s) 312
Hin1II CATG 2 cut(s) 200, 414
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 3 cut(s) 155, 227, 272
HpaII CCGG 1 cut(s) 312
HphI GGTGA 3 cut(s) 55, 349, 384
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 132, 160, 454
Hpy188III TCNNGA 4 cut(s) 100, 148, 170, 312
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 119, 301, 350, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 3 cut(s) 129, 157, 471
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 2 cut(s) 200, 414
Kpn2I TCCGGA 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 105, 427
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 9 cut(s) 14, 23, 37, 64, 155, 237, 325, 393, 408
Lsp1109I GCAGC 1 cut(s) 427
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 259, 337, 390
MalI GATC 2 cut(s) 107, 429
MboI GATC 2 cut(s) 105, 427
MboII GAAGA 7 cut(s) 35, 76, 79, 88, 115, 187, 415
MflI RGATCY 1 cut(s) 105
MluCI AATT 4 cut(s) 70, 80, 92, 114
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 3 cut(s) 177, 261, 328
MroI TCCGGA 1 cut(s) 311
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 2 cut(s) 105, 427
NlaIII CATG 2 cut(s) 200, 414
NmuCI GTSAC 2 cut(s) 337, 390
NspI RCATGY 1 cut(s) 200
PaeI GCATGC 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 227, 272
PkrI GCNGC 2 cut(s) 195, 442
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp1406I AACGTT 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 50
PspEI GGTNACC 2 cut(s) 337, 390
PspGI CCWGG 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 18
SatI GCNGC 2 cut(s) 194, 441
Sau3AI GATC 2 cut(s) 105, 427
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 52
SetI ASST 8 cut(s) 16, 130, 138, 281, 290, 295, 339, 424
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SphI GCATGC 1 cut(s) 200
Sse9I AATT 4 cut(s) 70, 80, 92, 114
SsiI CCGC 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 281
TasI AATT 4 cut(s) 70, 80, 92, 114
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 2 cut(s) 227, 272
TscAI CASTG 2 cut(s) 42, 270
TseFI GTSAC 2 cut(s) 337, 390
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 337, 390
TspDTI ATGAA 5 cut(s) 77, 132, 339, 416, 473
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 42, 270
XapI RAATTY 1 cut(s) 70
XceI RCATGY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.