Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

53564529 .. 53567733

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG331200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAAAGAAACCGGTGAAATACTCTGTGGTGGATGCTTTCACCGACTCAGCTTTTAAGGGGAATCCAGCAGCAGTTTGCTTGCTAGAGGAAGACAGAGATGATCAATGGATGCAAGCTCTGGCCGCGGAGTTCAATCTCTCCGAGACATGTTACTTGACTCGCCTCAATGGCTCGGACCACTCGCCTTCTTTGACTTCCACAACAAGGTTCAGTCTCAGATGGTTCACTCCTGTTGCTGAGGTTGAGCTTTGTGGTCATGCAACATTAGCGGCTGCTTATACCCTGTTTATGTCTGGTTTGATTGATTCCGACGTTATAGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCATGTTAAGGCAGCCAACGGTTCACATTTAAAAAATGGTGAAGCACAAGATAACTATTTTATTGAACTGAATTTTCCTGCTGACCCATCTTCTGAATTCAATTCTGCCGAGGTTTCGTTTATTTCCAACGCCTTGAGGGGTGCTCTGGTTGTTGAAATAATGAGGACAGTTGCAGATAATCTCCTTGTGGTGCTTCCATCTGGAAAGACTGTTGCAGATTTGTTGCCACAGTTTGATGCAATCGAAAAATGTCCAGGTACTGGAGTGATTGTAACAGGAGTTGCTCCGCCAGAGTCTGGATTTGATTTTATCAGTAGATTCTTCTGCCCGAAATTCGGGATCAGTGAGGATGCTGTTACTGGGAGTGCACATTGTGGCTTAGCACCATACTGGTGCAAGAAACTGGGAAAGTGTGATGTTGTTGCATATCAGGCGTCACCTAGAGGGGGAACACTAAACATTCGTCTGGATGAGAAAAATCAAAGGGTGCTACTCCGAGGGCAAGCGGTTACCGTGATGGAAGGAACTGTTCTAGTTTGGCCTCGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

306

Amino Acids

33.12

Weight (kDa)

5.21

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	11 - 298	7.9e-86	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	629, 665
AccII	CGCG	1 cut(s)	128
AciI	CCGC	5 cut(s)	126, 128, 272, 656, 875
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	4 cut(s)	342, 439, 464, 701
AcyI	GRCGYC	1 cut(s)	803
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	5 cut(s)	207, 629, 665, 704, 815
AflIII	ACRYGT	1 cut(s)	149
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	4 cut(s)	136, 434, 469, 524
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	4 cut(s)	53, 119, 250, 353
AluI	AGCT	4 cut(s)	53, 119, 250, 353
Alw21I	GWGCWC	2 cut(s)	514, 739
Alw26I	GTCTC	2 cut(s)	140, 221
Alw44I	GTGCAC	1 cut(s)	735
AlwI	GGATC	1 cut(s)	716
AlwNI	CAGNNNCTG	2 cut(s)	629, 665
AoxI	GGCC	2 cut(s)	123, 908
ApaLI	GTGCAC	1 cut(s)	735
ApeKI	GCWGC	3 cut(s)	71, 275, 380
ApoI	RAATTY	4 cut(s)	342, 439, 464, 701
AsiGI	ACCGGT	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	28, 34, 419, 798
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	739
BaeI	ACNNNNGTAYC	2 cut(s)	618, 651
BauI	CACGAG	1 cut(s)	912
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	514, 739
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	83, 262, 392
BccI	CCATC	4 cut(s)	216, 463, 574, 880
BciT130I	CCWGG	1 cut(s)	624
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	140, 221
BfaI	CTAG	3 cut(s)	86, 810, 902
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
BlpI	GCTNAGC	1 cut(s)	748
BlsI	GCNGC	5 cut(s)	73, 127, 274, 277, 382
Bme1390I	CCNGG	1 cut(s)	624
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	624
BmrI	ACTGGG	2 cut(s)	738, 782
BmsI	GCATC	4 cut(s)	25, 102, 595, 709
BmuI	ACTGGG	2 cut(s)	738, 782
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	748
BpuEI	CTTGAG	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	803
BsaJI	CCNNGG	3 cut(s)	126, 477, 865
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	5 cut(s)	207, 629, 665, 704, 815
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	4 cut(s)	634, 733, 764, 777
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	126, 477, 865
BseGI	GGATG	4 cut(s)	40, 117, 724, 844
BseLI	CCNNNNNNNGG	5 cut(s)	207, 629, 665, 704, 815
BseMII	CTCAG	3 cut(s)	63, 231, 232
BseNI	ACTGG	4 cut(s)	634, 733, 764, 777
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	3 cut(s)	83, 262, 392
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	125, 910
BshTI	ACCGGT	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	514, 739
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	5 cut(s)	207, 629, 665, 704, 815
BsmAI	GTCTC	2 cut(s)	140, 221
BsnI	GGCC	2 cut(s)	125, 910
Bsp1286I	GDGCHC	2 cut(s)	514, 739
Bsp143I	GATC	3 cut(s)	103, 367, 708
Bsp1720I	GCTNAGC	1 cut(s)	748
BspACI	CCGC	5 cut(s)	126, 128, 272, 656, 875
BspANI	GGCC	2 cut(s)	125, 910
BspCNI	CTCAG	3 cut(s)	62, 231, 232
BspFNI	CGCG	1 cut(s)	128
BspPI	GGATC	1 cut(s)	716
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	4 cut(s)	634, 733, 764, 777
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	126, 477, 865
BssMI	GATC	3 cut(s)	103, 367, 708
BssNI	GRCGYC	1 cut(s)	803
BssSI	CACGAG	1 cut(s)	912
Bst2BI	CACGAG	1 cut(s)	912
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	6 cut(s)	389, 538, 580, 600, 883, 898
BstACI	GRCGYC	1 cut(s)	803
BstC8I	GCNNGC	3 cut(s)	83, 117, 873
BstDEI	CTNAG	4 cut(s)	49, 218, 240, 748
BstDSI	CCRYGG	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	877
BstF5I	GGATG	4 cut(s)	40, 117, 724, 844
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	3 cut(s)	106, 370, 711
BstMAI	GTCTC	2 cut(s)	140, 221
BstMBI	GATC	3 cut(s)	103, 367, 708
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 171, 269, 800
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	153
BstPI	GGTNACC	1 cut(s)	877
BstSCI	CCNGG	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	83, 262, 392
BstV2I	GAAGAC	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	125, 910
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	4 cut(s)	40, 117, 724, 844
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	3 cut(s)	83, 117, 873
CaiI	CAGNNNCTG	2 cut(s)	629, 665
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	178
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	792
Csp6I	GTAC	1 cut(s)	627
CspAI	ACCGGT	1 cut(s)	13
CviAII	CATG	3 cut(s)	150, 260, 371
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	4 cut(s)	49, 218, 240, 748
DpnI	GATC	3 cut(s)	105, 369, 710
DpnII	GATC	3 cut(s)	103, 367, 708
DraI	TTTAAA	1 cut(s)	399
DraIII	CACNNNGTG	1 cut(s)	743
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	877
EcoO65I	GGTNACC	1 cut(s)	877
EcoRI	GAATTC	2 cut(s)	342, 464
EcoRII	CCWGG	1 cut(s)	622
FaeI	CATG	3 cut(s)	153, 263, 374
FaiI	YATR	8 cut(s)	151, 261, 282, 293, 320, 372, 757, 796
FatI	CATG	3 cut(s)	149, 259, 370
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
FokI	GGATG	4 cut(s)	47, 124, 731, 851
Fsp4HI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
FspBI	CTAG	3 cut(s)	86, 810, 902
GluI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
GsuI	CTGGAG	1 cut(s)	651
HaeIII	GGCC	2 cut(s)	125, 910
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	792
Hin1I	GRCGYC	1 cut(s)	803
Hin1II	CATG	3 cut(s)	153, 263, 374
HinfI	GANTC	6 cut(s)	47, 64, 160, 308, 662, 687
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	4 cut(s)	28, 34, 419, 798
Hpy166II	GTNNAC	3 cut(s)	228, 392, 737
Hpy188I	TCNGA	6 cut(s)	145, 178, 221, 313, 463, 866
Hpy188III	TCNNGA	5 cut(s)	339, 570, 666, 706, 836
Hpy8I	GTNNAC	3 cut(s)	228, 392, 737
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	198, 884
HpyCH4III	ACNGT	6 cut(s)	389, 538, 580, 600, 883, 898
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	8 cut(s)	115, 263, 542, 584, 608, 737, 765, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 171, 269, 800
HpyF3I	CTNAG	4 cut(s)	49, 218, 240, 748
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	803
Hsp92II	CATG	3 cut(s)	153, 263, 374
Ksp22I	TGATCA	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	103, 367, 708
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	3 cut(s)	83, 262, 392
LweI	GCATC	4 cut(s)	25, 102, 595, 709
MaeI	CTAG	3 cut(s)	86, 810, 902
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	5 cut(s)	152, 640, 724, 804, 877
MalI	GATC	3 cut(s)	105, 369, 710
MboI	GATC	3 cut(s)	103, 367, 708
MboII	GAAGA	3 cut(s)	104, 450, 682
MhlI	GDGCHC	2 cut(s)	514, 739
MluCI	AATT	5 cut(s)	342, 439, 464, 469, 701
MlyI	GAGTC	3 cut(s)	41, 154, 671
MmeI	TCCRAC	2 cut(s)	336, 519
MseI	TTAA	3 cut(s)	57, 375, 398
MslI	CAYNNNNRTG	1 cut(s)	760
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	4 cut(s)	125, 171, 269, 800
NdeII	GATC	3 cut(s)	103, 367, 708
NlaIII	CATG	3 cut(s)	153, 263, 374
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	804
NspI	RCATGY	1 cut(s)	153
PciI	ACATGT	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	64, 308, 687
PflFI	GACNNNGTC	1 cut(s)	334
PflMI	CCANNNNNTGG	2 cut(s)	629, 665
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	5 cut(s)	73, 127, 274, 277, 382
PleI	GAGTC	3 cut(s)	41, 154, 670
PpsI	GAGTC	3 cut(s)	41, 154, 670
PscI	ACATGT	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	622
PspEI	GGTNACC	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	622
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	2 cut(s)	629, 665
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	1 cut(s)	760
SacII	CCGCGG	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	57, 375, 398
SatI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
Sau3AI	GATC	3 cut(s)	103, 367, 708
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	3 cut(s)	41, 154, 671
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	2 cut(s)	514, 739
SfaNI	GCATC	4 cut(s)	25, 102, 595, 709
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	760
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	5 cut(s)	342, 439, 464, 469, 701
SsiI	CCGC	5 cut(s)	126, 128, 272, 656, 875
SspMI	CTAG	3 cut(s)	86, 810, 902
StyD4I	CCNGG	1 cut(s)	622
TaaI	ACNGT	6 cut(s)	389, 538, 580, 600, 883, 898
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	329, 612
TasI	AATT	5 cut(s)	342, 439, 464, 469, 701
TauI	GCSGC	2 cut(s)	128, 275
TfiI	GAWTC	3 cut(s)	64, 308, 687
Tru1I	TTAA	3 cut(s)	57, 375, 398
Tru9I	TTAA	3 cut(s)	57, 375, 398
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	804
TseI	GCWGC	3 cut(s)	71, 275, 380
Tsp45I	GTSAC	1 cut(s)	804
TspRI	CASTG	1 cut(s)	718
Tth111I	GACNNNGTC	1 cut(s)	334
Van91I	CCANNNNNTGG	2 cut(s)	629, 665
VneI	GTGCAC	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	4 cut(s)	342, 439, 464, 701
XceI	RCATGY	1 cut(s)	153
XspI	CTAG	3 cut(s)	86, 810, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.