AT1G03210

Phenazine biosynthesis PhzC PhzF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001362
Physical Location & Seq
Forward (+)
782904 .. 784346
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03210.1

Sequence Viewer

Length: 861 bp
ATGGCGGAGAAAAAGAGAGTCAAGTACTTCATTGTTGATGCATTCGCTGAATCTGCCTTCAAAGGGAATCCAGCTGCTGTTTGCTTTCTAGAAGACGATAACGAGAGAGACGACGCGTGGCTTCAGTCTCTTGCCACCGAGTTCAATATCTCCGAGACTTGTTTCCTCACTCCGATCATCGGAGACTTGCCTCGCTTCCGTCTCCGTTGGTTCACTCCAGTCGCTGAGGTGGATTTGTGTGGTCATGCAACTTTAGCATCTGCTCACGTTCTCTTCTCAACTGGTTTGGTTGGTTCAGAGACAGTTGAGTTCGACACATTATCAGGGATTCTAACAGCTAAACATCTCAAAAATGATGATGATGGAGAAGAATCAAGTATCGAATTGGATTTCCCTGTTGTTCCAACATATGAAGTCAACTACATTGATGATGATCTCTCTTTGTTCTCCAAAGCCTTGAATGGAGCTACCATTCTTGATGTCAAAGCCACAAAGAAAGACCTCCTCGTTGTGCTTTCATCTTGGGAAGCTGTTATTGATTTGAAGCCAAGATTAGATGAGATATCGAAATGCCCTTGTGAAGGAATGATGGTGACTGCCGCTGCTTCTGATGGATCTACTTATGATTTCTGTAGTCGCTACTTTGCCCCGAGATTCGGAATCAATGAGGACCCTGTTACTGGAAGTGCTCATTGTGCTTTAGCTCATTACTGGAGCCTCAGGATGAACAAGTGTGATTTCTTCGCCTACCAGGCTTCAAGCAGAGGAGGAACGTTGAAGGTGCACCTGGACAAAGAGAAGCAGAGGGTTCTACTGAGAGGCAAAGCAGTCACTGTTATGGAAGGTTATGTCTTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

286

Amino Acids

31.71

Weight (kDa)

4.87

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 12 - 282 1e-105 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 116
AciI CCGC 2 cut(s) 5, 600
AclI AACGTT 1 cut(s) 773
AclWI GGATC 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 5 cut(s) 63, 179, 581, 656, 680
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 6 cut(s) 61, 145, 460, 544, 759, 778
AjnI CCWGG 2 cut(s) 750, 786
AluBI AGCT 5 cut(s) 74, 338, 467, 530, 704
AluI AGCT 5 cut(s) 74, 338, 467, 530, 704
Alw21I GWGCWC 2 cut(s) 691, 786
Alw26I GTCTC 6 cut(s) 102, 132, 149, 177, 206, 293
Alw44I GTGCAC 1 cut(s) 782
AlwI GGATC 1 cut(s) 622
AlwNI CAGNNNCTG 3 cut(s) 77, 224, 833
Ama87I CYCGRG 1 cut(s) 649
ApaLI GTGCAC 1 cut(s) 782
ApeKI GCWGC 2 cut(s) 74, 602
AspS9I GGNCC 1 cut(s) 670
AsuHPI GGTGA 1 cut(s) 604
AvaI CYCGRG 1 cut(s) 649
AvaII GGWCC 1 cut(s) 670
AxyI CCTNAGG 1 cut(s) 719
BaeGI GKGCMC 1 cut(s) 786
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 691, 786
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 61, 589
BccI CCATC 3 cut(s) 356, 583, 605
BciT130I CCWGG 2 cut(s) 752, 788
BcoDI GTCTC 6 cut(s) 102, 132, 149, 177, 206, 293
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 631
BglI GCCNNNNNGGC 1 cut(s) 752
BisI GCNGC 3 cut(s) 75, 600, 603
BlsI GCNGC 3 cut(s) 76, 601, 604
BmcAI AGTACT 1 cut(s) 26
Bme1390I CCNGG 2 cut(s) 752, 788
Bme18I GGWCC 1 cut(s) 670
BmeT110I CYCGRG 1 cut(s) 649
BmgT120I GGNCC 1 cut(s) 670
BmiI GGNNCC 2 cut(s) 672, 716
BmrFI CCNGG 2 cut(s) 752, 788
BmsI GCATC 2 cut(s) 28, 266
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 2 cut(s) 201, 733
Bpu10I CCTNAGC 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 432
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 179, 581, 656, 680
Bse1I ACTGG 4 cut(s) 218, 286, 685, 716
Bse21I CCTNAGG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 2 cut(s) 752, 788
BseGI GGATG 1 cut(s) 729
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 5 cut(s) 63, 179, 581, 656, 680
BseMII CTCAG 3 cut(s) 216, 733, 806
BseNI ACTGG 4 cut(s) 218, 286, 685, 716
BseRI GAGGAG 2 cut(s) 494, 780
BseSI GKGCMC 1 cut(s) 786
BseXI GCAGC 2 cut(s) 61, 589
Bsh1236I CGCG 1 cut(s) 116
BsiHKAI GWGCWC 2 cut(s) 691, 786
BsiHKCI CYCGRG 1 cut(s) 649
BslI CCNNNNNNNGG 5 cut(s) 63, 179, 581, 656, 680
BsmAI GTCTC 6 cut(s) 102, 132, 149, 177, 206, 293
BsmBI CGTCTC 2 cut(s) 102, 206
BsmI GAATGC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 691, 786
Bsp143I GATC 3 cut(s) 174, 433, 614
BspACI CCGC 2 cut(s) 5, 600
BspCNI CTCAG 3 cut(s) 217, 732, 807
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 672, 716
BspPI GGATC 1 cut(s) 622
BsrI ACTGG 4 cut(s) 218, 286, 685, 716
BssMI GATC 3 cut(s) 174, 433, 614
Bst2UI CCWGG 2 cut(s) 752, 788
Bst4CI ACNGT 2 cut(s) 304, 835
Bst6I CTCTTC 1 cut(s) 278
BstDEI CTNAG 4 cut(s) 225, 719, 815, 853
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 729
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 3 cut(s) 177, 436, 617
BstMAI GTCTC 6 cut(s) 102, 132, 149, 177, 206, 293
BstMBI GATC 3 cut(s) 174, 433, 614
BstMWI GCNNNNNNNGC 4 cut(s) 53, 254, 695, 752
BstNI CCWGG 2 cut(s) 752, 788
BstSCI CCNGG 2 cut(s) 750, 786
BstSFI CTRYAG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 786
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 61, 589
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
Bsu36I CCTNAGG 1 cut(s) 719
BtsCI GGATG 1 cut(s) 729
BtsIMutI CAGTG 1 cut(s) 831
CaiI CAGNNNCTG 3 cut(s) 77, 224, 833
Cfr13I GGNCC 1 cut(s) 670
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 245
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 4 cut(s) 225, 719, 815, 853
DpnI GATC 3 cut(s) 176, 435, 616
DpnII GATC 3 cut(s) 174, 433, 614
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 670
Eco57I CTGAAG 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 649
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoO109I RGGNCCY 1 cut(s) 670
EcoRII CCWGG 2 cut(s) 750, 786
EcoRV GATATC 1 cut(s) 564
EcoT22I ATGCAT 1 cut(s) 43
Esp3I CGTCTC 2 cut(s) 102, 206
FaeI CATG 1 cut(s) 248
FaiI YATR 6 cut(s) 246, 409, 411, 624, 839, 849
FatI CATG 1 cut(s) 244
FauNDI CATATG 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 75, 600, 603
FokI GGATG 1 cut(s) 736
Fsp4HI GCNGC 3 cut(s) 75, 600, 603
FspBI CTAG 1 cut(s) 89
GluI GCNGC 3 cut(s) 75, 600, 603
GsuI CTGGAG 2 cut(s) 201, 733
HgaI GACGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 248
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 7 cut(s) 18, 50, 67, 328, 371, 654, 660
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 3 cut(s) 213, 418, 784
Hpy188I TCNGA 6 cut(s) 154, 174, 182, 298, 610, 659
Hpy188III TCNNGA 3 cut(s) 89, 476, 721
Hpy8I GTNNAC 3 cut(s) 213, 418, 784
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 4 cut(s) 67, 575, 772, 836
HpyCH4III ACNGT 2 cut(s) 304, 835
HpyCH4IV ACGT 2 cut(s) 267, 773
HpyCH4V TGCA 3 cut(s) 41, 248, 784
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 254, 695, 752
HpyF3I CTNAG 4 cut(s) 225, 719, 815, 853
HpySE526I ACGT 2 cut(s) 267, 773
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 3 cut(s) 174, 433, 614
LmnI GCTCC 2 cut(s) 464, 714
Lsp1109I GCAGC 2 cut(s) 61, 589
LweI GCATC 2 cut(s) 28, 266
MaeI CTAG 1 cut(s) 89
MaeII ACGT 2 cut(s) 267, 773
MaeIII GTNAC 3 cut(s) 592, 676, 829
MalI GATC 3 cut(s) 176, 435, 616
MboI GATC 3 cut(s) 174, 433, 614
MboII GAAGA 4 cut(s) 104, 265, 380, 733
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 2 cut(s) 691, 786
MluCI AATT 1 cut(s) 383
MluI ACGCGT 1 cut(s) 114
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 428
Mph1103I ATGCAT 1 cut(s) 43
MslI CAYNNNNRTG 1 cut(s) 836
MspA1I CMGCKG 2 cut(s) 74, 602
MspR9I CCNGG 2 cut(s) 752, 788
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 2 cut(s) 752, 788
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 53, 254, 695, 752
NdeI CATATG 1 cut(s) 409
NdeII GATC 3 cut(s) 174, 433, 614
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 672, 716
NmuCI GTSAC 2 cut(s) 592, 829
NsiI ATGCAT 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 6 cut(s) 50, 67, 328, 371, 654, 660
PkrI GCNGC 3 cut(s) 76, 601, 604
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 670
Psp1406I AACGTT 1 cut(s) 773
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 2 cut(s) 750, 786
PspGI CCWGG 2 cut(s) 750, 786
PspN4I GGNNCC 2 cut(s) 672, 716
PspPI GGNCC 1 cut(s) 670
PspPPI RGGWCCY 1 cut(s) 670
PstNI CAGNNNCTG 3 cut(s) 77, 224, 833
PsuI RGATCY 1 cut(s) 614
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 836
SatI GCNGC 3 cut(s) 75, 600, 603
Sau3AI GATC 3 cut(s) 174, 433, 614
Sau96I GGNCC 1 cut(s) 670
ScaI AGTACT 1 cut(s) 26
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 752, 788
SduI GDGCHC 2 cut(s) 691, 786
SfaNI GCATC 2 cut(s) 28, 266
SfcI CTRYAG 1 cut(s) 631
SinI GGWCC 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 836
Sse9I AATT 1 cut(s) 383
SsiI CCGC 2 cut(s) 5, 600
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 750, 786
TaaI ACNGT 2 cut(s) 304, 835
TaiI ACGT 2 cut(s) 270, 776
TaqI TCGA 3 cut(s) 312, 381, 566
TasI AATT 1 cut(s) 383
TatI WGTACW 1 cut(s) 24
TauI GCSGC 1 cut(s) 602
TfiI GAWTC 6 cut(s) 50, 67, 328, 371, 654, 660
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 2 cut(s) 592, 829
TseI GCWGC 2 cut(s) 74, 602
Tsp45I GTSAC 2 cut(s) 592, 829
TspDTI ATGAA 4 cut(s) 19, 426, 507, 740
TspGWI ACGGA 2 cut(s) 188, 194
TspRI CASTG 1 cut(s) 838
VneI GTGCAC 1 cut(s) 782
VpaK11BI GGWCC 1 cut(s) 670
XagI CCTNNNNNAGG 1 cut(s) 579
XbaI TCTAGA 1 cut(s) 88
XspI CTAG 1 cut(s) 89
ZrmI AGTACT 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.