Rorug06G0107300

R3H-associated N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001362
Physical Location & Seq
Forward (+)
14590173 .. 14591195
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0107300.1

Sequence Viewer

Length: 558 bp
ATGGGCATTTGCAGCTCGTCAACCTCCGTGGCCACAGCCAAATTGATTCTCCAAGATGGGCAGCTCCAAGAATTCTCAGACCCAGTTAGGGCATCCTACGTACTGCAGAAGATCAGCTCCCCGGGCTTTGTATGTGACGCCGACGACATGGATTTCGGAGGCTTTGTTACAGCTGTTAATGGGGAAGAAGAGCTTCAGCTGGGTCAGCTTTACTTTGTGTTGCCGGTGAGTTGGTTGAATAAGCCGCTTCGGGCAGAGGAGATGGCGGCTTTGGCTGTTAGGGCAAGTTTGGCGCTTGGCAATATGAGACCGAGTAATAGGTGTTGTTGTAAAGGAGGGGATGATCAAATTGTATTTAGTACTATTAAGAAGGATGTCAAGCCTAAGATGGCAGCCGGCAGCGGCAGTTTTGGCGTTCATCGAGACACAGTGAGGAAAAGAAGAGGGAGAAGCGGACGCCATGGTGGTGGTGGAAGTTATACCTCTATGGTAAAGTTGAGTGTGATTTTGGAAGACGAGGATAGGGAAGAGGGTGGTGAGATTTGGGTTCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

185

Amino Acids

19.99

Weight (kDa)

5.78

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 109 1.3e-23 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 245, 266, 402, 453
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 179
AcyI GRCGYC 2 cut(s) 138, 457
AfaI GTAC 2 cut(s) 102, 361
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 7 cut(s) 15, 64, 117, 173, 193, 199, 208
AluI AGCT 7 cut(s) 15, 64, 117, 173, 193, 199, 208
Alw26I GTCTC 2 cut(s) 301, 417
Ama87I CYCGRG 1 cut(s) 121
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 4 cut(s) 12, 61, 392, 399
ApoI RAATTY 1 cut(s) 71
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 295
AsuC2I CCSGG 2 cut(s) 122, 123
AsuHPI GGTGA 2 cut(s) 238, 548
AvaI CYCGRG 1 cut(s) 121
BalI TGGCCA 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 519
BbvI GCAGC 4 cut(s) 24, 73, 404, 411
BccI CCATC 3 cut(s) 50, 256, 382
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 2 cut(s) 122, 123
BcoDI GTCTC 2 cut(s) 301, 417
BfmI CTRYAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 296
BisI GCNGC 7 cut(s) 13, 62, 245, 267, 393, 400, 403
BlsI GCNGC 7 cut(s) 14, 63, 246, 268, 394, 401, 404
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 122, 123
BmeT110I CYCGRG 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 122, 123
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 519
BpuMI CCSGG 2 cut(s) 122, 123
BsaAI YACGTR 1 cut(s) 100
BsaHI GRCGYC 2 cut(s) 138, 457
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 4 cut(s) 27, 120, 121, 460
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse118I RCCGGY 2 cut(s) 223, 395
Bse1I ACTGG 1 cut(s) 83
BseDI CCNNGG 4 cut(s) 27, 120, 121, 460
BseGI GGATG 3 cut(s) 92, 346, 379
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 4 cut(s) 24, 73, 404, 411
BseYI CCCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 3 cut(s) 122, 224, 396
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 301, 417
BsnI GGCC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 121
Bsp143I GATC 2 cut(s) 111, 343
Bsp19I CCATGG 1 cut(s) 460
BspACI CCGC 4 cut(s) 245, 266, 402, 453
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 89
BspMAI CTGCAG 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 301
BsrFI RCCGGY 2 cut(s) 223, 395
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 2 cut(s) 223, 395
BssECI CCNNGG 4 cut(s) 27, 120, 121, 460
BssMI GATC 2 cut(s) 111, 343
BssNI GRCGYC 2 cut(s) 138, 457
BssT1I CCWWGG 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 430
Bst6I CTCTTC 3 cut(s) 183, 436, 522
BstACI GRCGYC 2 cut(s) 138, 457
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 76, 384
BstDSI CCRYGG 2 cut(s) 27, 460
BstF5I GGATG 3 cut(s) 92, 346, 379
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 2 cut(s) 114, 346
BstMAI GTCTC 2 cut(s) 301, 417
BstMBI GATC 2 cut(s) 111, 343
BstMWI GCNNNNNNNGC 7 cut(s) 12, 123, 205, 272, 281, 290, 411
BstSCI CCNGG 2 cut(s) 120, 121
BstSFI CTRYAG 1 cut(s) 104
BstSNI TACGTA 1 cut(s) 100
BstV1I GCAGC 4 cut(s) 24, 73, 404, 411
BstV2I GAAGAC 1 cut(s) 519
BstXI CCANNNNNNTGG 1 cut(s) 467
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 2 cut(s) 27, 460
BtsCI GGATG 3 cut(s) 92, 346, 379
BtsIMutI CAGTG 1 cut(s) 435
Cac8I GCNNGC 1 cut(s) 397
CfoI GCGC 1 cut(s) 295
Cfr10I RCCGGY 2 cut(s) 223, 395
Cfr9I CCCGGG 1 cut(s) 121
CseI GACGC 2 cut(s) 146, 465
Csp6I GTAC 2 cut(s) 101, 360
CspCI CAANNNNNGTGG 2 cut(s) 9, 44
CviAII CATG 2 cut(s) 148, 461
CviQI GTAC 2 cut(s) 101, 360
DdeI CTNAG 2 cut(s) 76, 384
DpnI GATC 2 cut(s) 113, 345
DpnII GATC 2 cut(s) 111, 343
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 3 cut(s) 183, 436, 522
EarI CTCTTC 3 cut(s) 183, 436, 522
Eco105I TACGTA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 460
Eco31I GGTCTC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 2 cut(s) 151, 464
FaiI YATR 6 cut(s) 133, 149, 305, 462, 480, 488
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 2 cut(s) 147, 460
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 7 cut(s) 13, 62, 245, 267, 393, 400, 403
FokI GGATG 3 cut(s) 79, 353, 386
Fsp4HI GCNGC 7 cut(s) 13, 62, 245, 267, 393, 400, 403
GlaI GCGC 1 cut(s) 294
GluI GCNGC 7 cut(s) 13, 62, 245, 267, 393, 400, 403
GsaI CCCAGC 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 1 cut(s) 32
HapII CCGG 3 cut(s) 122, 224, 396
HgaI GACGC 2 cut(s) 146, 465
HhaI GCGC 1 cut(s) 295
Hin1I GRCGYC 2 cut(s) 138, 457
Hin1II CATG 2 cut(s) 151, 464
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 46
HpaII CCGG 3 cut(s) 122, 224, 396
HphI GGTGA 2 cut(s) 238, 548
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 2 cut(s) 79, 158
Hpy188III TCNNGA 2 cut(s) 422, 551
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 12, 106
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 123, 205, 272, 281, 290, 411
HpyF3I CTNAG 2 cut(s) 76, 384
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 2 cut(s) 138, 457
Hsp92II CATG 2 cut(s) 151, 464
HspAI GCGC 1 cut(s) 293
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 111, 343
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 69, 122
LpnPI CCDG 6 cut(s) 96, 135, 185, 237, 409, 536
Lsp1109I GCAGC 4 cut(s) 24, 73, 404, 411
LweI GCATC 1 cut(s) 101
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 134, 166
MalI GATC 2 cut(s) 113, 345
MboI GATC 2 cut(s) 111, 343
MboII GAAGA 6 cut(s) 121, 197, 200, 453, 524, 539
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 3 cut(s) 41, 71, 348
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 9 cut(s) 34, 152, 250, 329, 426, 437, 493, 511, 523
Mox20I TGGCCA 1 cut(s) 32
MroNI GCCGGC 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 1 cut(s) 32
MseI TTAA 2 cut(s) 177, 366
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 3 cut(s) 173, 199, 402
MspI CCGG 3 cut(s) 122, 224, 396
MspR9I CCNGG 2 cut(s) 122, 123
MwoI GCNNNNNNNGC 7 cut(s) 12, 123, 205, 272, 281, 290, 411
NaeI GCCGGC 1 cut(s) 397
NciI CCSGG 2 cut(s) 122, 123
NcoI CCATGG 1 cut(s) 460
NdeII GATC 2 cut(s) 111, 343
NgoMIV GCCGGC 1 cut(s) 395
NlaIII CATG 2 cut(s) 151, 464
NmuCI GTSAC 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 183
PdiI GCCGGC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 7 cut(s) 14, 63, 246, 268, 394, 401, 404
Ppu21I YACGTR 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 108
PvuII CAGCTG 2 cut(s) 173, 199
RsaI GTAC 2 cut(s) 102, 361
RsaNI GTAC 2 cut(s) 101, 360
RseI CAYNNNNRTG 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 177, 366
SatI GCNGC 7 cut(s) 13, 62, 245, 267, 393, 400, 403
Sau3AI GATC 2 cut(s) 111, 343
ScaI AGTACT 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 122, 123
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 104
SmaI CCCGGG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 465
SnaBI TACGTA 1 cut(s) 100
Sse9I AATT 3 cut(s) 41, 71, 348
SsiI CCGC 4 cut(s) 245, 266, 402, 453
StyD4I CCNGG 2 cut(s) 120, 121
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 421
TaqII GACCGA 1 cut(s) 325
TasI AATT 3 cut(s) 41, 71, 348
TatI WGTACW 1 cut(s) 359
TauI GCSGC 3 cut(s) 247, 269, 405
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 2 cut(s) 177, 366
Tru9I TTAA 2 cut(s) 177, 366
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 4 cut(s) 12, 61, 392, 399
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 407
TspGWI ACGGA 1 cut(s) 16
TspMI CCCGGG 1 cut(s) 121
TspRI CASTG 1 cut(s) 435
XapI RAATTY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmaI CCCGGG 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.