Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

52792513 .. 52807534

Gene Structure 15022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGAAGAAACCTGTGAAATACTATCTGGTGGATGCTTTCACCGACTCAGCTTTCAAGGGGAATCCAGCAGCAGTTTGCTTGCTAGAGGAAGACAGAGATGATCAATGGATGCAAGCTCTGGCCGCGGAGTTCAATCTCTCTGAGACAGGTTACTTGACTCGCCTCAATGGCTCGGACCACTCGCCTTCTTTGACTTCCACACCAAGGTTCAGTCTCAGATGGTTTACTCCTGTTGCAGAGGTTGAGCTTTGTGGTCATGTAACATTAGCGGCTGCTTATACCCTGTTTATGTCTGGTTTGATTGATTCCGACGTTATTGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCAAGTTAAGGCAGCCAACGGTTCACATTTAAAAAATGGTGAAGCACAAGATAACTATTTTATTGAACTGAATTTTCCTGCTGACCCATCTTCTGAATTCAATTCTGCTGAGGTTTCGTTTATTTCCAACGCCTTGGGGGGTGCTCCTGTGGTTGAAATAATGAGGACAGTTGCAGATAATCTACTTGTGGTGCTTCCATCTGGAAAGACTGTTGCAGATTTGTTGCCACAGTTAGATGCAATTGAAAAATGTCCAGGTACTGGAGTGATTGTAACAGGAGTTGCTCCTCCAGAGTCTGGATTTGATTTTATCAGTAGATTCTTCTGCCCGAAATTGGGGATCAATGAGGATCCTGTTTGTGGGAGTGCACATTGTGGCTTAGCACCATACTGGTGCAAGAAACTGGGAAAGTGTGATGTTGTTGCATATCAGGCATCACCTAGAGGGGGAACACTATACATTCATCTGGATGAGAAAAATCAAAGGGTGCTACTCCGAGGGAAGGCGGTTACTGTGATGGAAGGAATTGTTCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

302

Amino Acids

32.56

Weight (kDa)

5.01

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhzC-PhzF	PF02567	11 - 298	2.2e-84	Phenazine biosynthesis-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	629, 665
AccII	CGCG	1 cut(s)	128
AciI	CCGC	4 cut(s)	126, 128, 272, 875
AclWI	GGATC	3 cut(s)	713, 716, 726
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	342, 439, 464
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	8 cut(s)	207, 629, 665, 703, 704, 728, 815, 871
AgsI	TTSAA	6 cut(s)	58, 136, 434, 469, 524, 614
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	4 cut(s)	53, 119, 250, 353
AluI	AGCT	4 cut(s)	53, 119, 250, 353
Alw21I	GWGCWC	2 cut(s)	514, 739
Alw26I	GTCTC	2 cut(s)	140, 221
Alw44I	GTGCAC	1 cut(s)	735
AlwI	GGATC	3 cut(s)	713, 716, 726
AlwNI	CAGNNNCTG	2 cut(s)	629, 665
AoxI	GGCC	1 cut(s)	123
ApaLI	GTGCAC	1 cut(s)	735
ApeKI	GCWGC	3 cut(s)	71, 275, 380
ApoI	RAATTY	3 cut(s)	342, 439, 464
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	3 cut(s)	34, 419, 798
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	739
BaeI	ACNNNNGTAYC	2 cut(s)	618, 651
BamHI	GGATCC	1 cut(s)	718
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	514, 739
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	3 cut(s)	83, 262, 392
BccI	CCATC	4 cut(s)	216, 463, 574, 880
BciT130I	CCWGG	1 cut(s)	624
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	140, 221
BfaI	CTAG	3 cut(s)	86, 810, 902
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
BlpI	GCTNAGC	1 cut(s)	748
BlsI	GCNGC	5 cut(s)	73, 127, 274, 277, 382
Bme1390I	CCNGG	1 cut(s)	624
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	720
BmrFI	CCNGG	1 cut(s)	624
BmrI	ACTGGG	1 cut(s)	782
BmsI	GCATC	4 cut(s)	25, 102, 595, 812
BmuI	ACTGGG	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	2 cut(s)	642, 651
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	748
BsaJI	CCNNGG	4 cut(s)	126, 206, 501, 865
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	8 cut(s)	207, 629, 665, 703, 704, 728, 815, 871
Bse1I	ACTGG	3 cut(s)	634, 764, 777
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	4 cut(s)	126, 206, 501, 865
BseGI	GGATG	3 cut(s)	40, 117, 844
BseLI	CCNNNNNNNGG	8 cut(s)	207, 629, 665, 703, 704, 728, 815, 871
BseMII	CTCAG	4 cut(s)	63, 135, 232, 468
BseNI	ACTGG	3 cut(s)	634, 764, 777
BseRI	GAGGAG	1 cut(s)	645
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	3 cut(s)	83, 262, 392
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	514, 739
BslI	CCNNNNNNNGG	8 cut(s)	207, 629, 665, 703, 704, 728, 815, 871
BsmAI	GTCTC	2 cut(s)	140, 221
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	514, 739
Bsp143I	GATC	4 cut(s)	103, 367, 708, 718
Bsp1720I	GCTNAGC	1 cut(s)	748
BspACI	CCGC	4 cut(s)	126, 128, 272, 875
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	4 cut(s)	62, 136, 231, 469
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	720
BspPI	GGATC	3 cut(s)	713, 716, 726
BsrI	ACTGG	3 cut(s)	634, 764, 777
BssECI	CCNNGG	4 cut(s)	126, 206, 501, 865
BssMI	GATC	4 cut(s)	103, 367, 708, 718
BssT1I	CCWWGG	2 cut(s)	206, 501
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	5 cut(s)	389, 538, 580, 600, 883
BstC8I	GCNNGC	2 cut(s)	83, 117
BstDEI	CTNAG	5 cut(s)	49, 144, 218, 477, 748
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	40, 117, 844
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	4 cut(s)	106, 370, 711, 721
BstMAI	GTCTC	2 cut(s)	140, 221
BstMBI	GATC	4 cut(s)	103, 367, 708, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 171, 800
BstNI	CCWGG	1 cut(s)	624
BstSCI	CCNGG	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	83, 262, 392
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	718
BstXI	CCANNNNNNTGG	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	40, 117, 844
Cac8I	GCNNGC	2 cut(s)	83, 117
CaiI	CAGNNNCTG	2 cut(s)	629, 665
Cfr13I	GGNCC	1 cut(s)	178
Cfr42I	CCGCGG	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	9 cut(s)	53, 119, 125, 174, 250, 275, 353, 383, 747
CviKI_1	RGCY	9 cut(s)	53, 119, 125, 174, 250, 275, 353, 383, 747
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	5 cut(s)	49, 144, 218, 477, 748
DpnI	GATC	4 cut(s)	105, 369, 710, 720
DpnII	GATC	4 cut(s)	103, 367, 708, 718
DraI	TTTAAA	1 cut(s)	399
DraIII	CACNNNGTG	1 cut(s)	743
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	206, 501
Eco47I	GGWCC	1 cut(s)	178
EcoRI	GAATTC	2 cut(s)	342, 464
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	2 cut(s)	206, 501
ErhI	CCWWGG	2 cut(s)	206, 501
FaeI	CATG	1 cut(s)	263
FaiI	YATR	6 cut(s)	261, 282, 293, 757, 796, 826
FatI	CATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
FokI	GGATG	3 cut(s)	47, 124, 851
Fsp4HI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
FspBI	CTAG	3 cut(s)	86, 810, 902
GluI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
GsuI	CTGGAG	2 cut(s)	642, 651
HaeIII	GGCC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	263
HinfI	GANTC	6 cut(s)	47, 64, 160, 308, 662, 687
HphI	GGTGA	3 cut(s)	34, 419, 798
Hpy166II	GTNNAC	3 cut(s)	228, 392, 737
Hpy188I	TCNGA	6 cut(s)	145, 178, 221, 313, 463, 866
Hpy188III	TCNNGA	5 cut(s)	339, 570, 659, 666, 836
Hpy8I	GTNNAC	3 cut(s)	228, 392, 737
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	198, 865, 884
HpyCH4III	ACNGT	5 cut(s)	389, 538, 580, 600, 883
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	8 cut(s)	115, 239, 542, 584, 608, 737, 765, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 171, 800
HpyF3I	CTNAG	5 cut(s)	49, 144, 218, 477, 748
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	103, 367, 708, 718
LmnI	GCTCC	2 cut(s)	517, 658
Lsp1109I	GCAGC	3 cut(s)	83, 262, 392
LweI	GCATC	4 cut(s)	25, 102, 595, 812
MaeI	CTAG	3 cut(s)	86, 810, 902
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	4 cut(s)	152, 262, 640, 877
MalI	GATC	4 cut(s)	105, 369, 710, 720
MboI	GATC	4 cut(s)	103, 367, 708, 718
MboII	GAAGA	4 cut(s)	19, 104, 450, 682
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	514, 739
MluCI	AATT	7 cut(s)	342, 439, 464, 469, 609, 701, 894
MlyI	GAGTC	3 cut(s)	41, 154, 671
MmeI	TCCRAC	2 cut(s)	336, 519
MnlI	CCTC	9 cut(s)	82, 176, 235, 472, 525, 666, 709, 806, 860
MseI	TTAA	2 cut(s)	375, 398
MslI	CAYNNNNRTG	2 cut(s)	760, 837
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	624
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	125, 171, 800
NdeII	GATC	4 cut(s)	103, 367, 708, 718
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	64, 308, 687
PflFI	GACNNNGTC	1 cut(s)	334
PflMI	CCANNNNNTGG	2 cut(s)	629, 665
PkrI	GCNGC	5 cut(s)	73, 127, 274, 277, 382
PleI	GAGTC	3 cut(s)	41, 154, 670
PpsI	GAGTC	3 cut(s)	41, 154, 670
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	1 cut(s)	720
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	2 cut(s)	629, 665
PsuI	RGATCY	1 cut(s)	718
PsyI	GACNNNGTC	1 cut(s)	334
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	2 cut(s)	760, 837
SacII	CCGCGG	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	375, 398
SatI	GCNGC	5 cut(s)	72, 126, 273, 276, 381
Sau3AI	GATC	4 cut(s)	103, 367, 708, 718
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	3 cut(s)	41, 154, 671
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	2 cut(s)	514, 739
SfaNI	GCATC	4 cut(s)	25, 102, 595, 812
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	760, 837
Sse9I	AATT	7 cut(s)	342, 439, 464, 469, 609, 701, 894
SsiI	CCGC	4 cut(s)	126, 128, 272, 875
SspMI	CTAG	3 cut(s)	86, 810, 902
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	2 cut(s)	206, 501
TaaI	ACNGT	5 cut(s)	389, 538, 580, 600, 883
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	329
TasI	AATT	7 cut(s)	342, 439, 464, 469, 609, 701, 894
TauI	GCSGC	2 cut(s)	128, 275
TfiI	GAWTC	3 cut(s)	64, 308, 687
Tru1I	TTAA	2 cut(s)	375, 398
Tru9I	TTAA	2 cut(s)	375, 398
TseI	GCWGC	3 cut(s)	71, 275, 380
TspDTI	ATGAA	1 cut(s)	821
Tth111I	GACNNNGTC	1 cut(s)	334
Van91I	CCANNNNNTGG	2 cut(s)	629, 665
VneI	GTGCAC	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	3 cut(s)	342, 439, 464
XspI	CTAG	3 cut(s)	86, 810, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.