RchiOBHm_Chr6g0291361

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001362
Physical Location & Seq
Reverse (-)
54545556 .. 54548349
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26142

Sequence Viewer

Length: 924 bp
ATGATCATTTTATCTATGGCGAAGAAACCTGTGAAATACTATCTGGTGGATGCTTTCACCGACTCAGCTTTCAAGGGGAATCCAGCAGCAGTTTGCTTGCTAGAGGAAGACAGAGATGATCAATGGATGCAAGCTCTGGCCGCGGAGTTCAATCTCTCCGAGACAGGTTACTTGACTCGCCTCAATGGCTCGGACCACTCGCCTTCTTTGACTTCCACACCAAGGTTCTGTCTCAGATGGTTCACTCCTGTTGCTGAGGTTGAGATTTGTGGTCATGCAACATTAGCAGCTGCTTATACCCTGTTTATGTCTGGTTTGATTGATTCCGACGTTATTGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCATGTTAAGGCAGCCAACGGTTCACATTTAAAAAATGGTGAAGCACAAGATAACTATTTTATTGAACTGAATTTTCCTGCTGACCCATCTTCTGAATTCAATTCTGCTGAGGTTTCGTTTATTTCCAATGCCTTGGGGGGTGCTCCTGTGGTTGAAATAATGAGGACAGTTGCAGATAATCTCCTTGTGGTGCTTCCATCTGGAAAGACTGTTGCGGATTTGTTGCCACAGTTTGATGCAATCGAAAAATGTCCAGGTAGTGGAGTGATTGTAACAGGAGTTGCTCCGCCAGAGTCTGGATTTGATTTTATCAGTAGATTCTTCTGCCCGAAATTCGGGATCAGTGAGGATGCTGTTACTGGGAGTGCACATTGTGGCTTAGCACCATACTGGTGCAAGAAACTGGGAAAGTGTGATGTTGTTGCATATCAGGCGTCACCTAGAGGGGGAACACTAAACATTCGTCTGGATGAGAAAAATCAAAGGGTGCTACTCCAAGGGAAGGCGGTTACTGTGATGGAAGGAACTGTTCTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

307

Amino Acids

33.04

Weight (kDa)

5.01

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 16 - 303 9.4e-84 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 644, 680
AccII CGCG 1 cut(s) 143
AciI CCGC 5 cut(s) 141, 143, 599, 671, 890
AclWI GGATC 1 cut(s) 731
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 4 cut(s) 357, 454, 479, 716
AcyI GRCGYC 1 cut(s) 818
AdeI CACNNNGTG 1 cut(s) 758
AfiI CCNNNNNNNGG 6 cut(s) 222, 644, 680, 719, 830, 886
AgsI TTSAA 5 cut(s) 73, 151, 449, 484, 539
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 4 cut(s) 68, 134, 290, 368
AluI AGCT 4 cut(s) 68, 134, 290, 368
Alw21I GWGCWC 2 cut(s) 529, 754
Alw26I GTCTC 2 cut(s) 155, 236
Alw44I GTGCAC 1 cut(s) 750
AlwI GGATC 1 cut(s) 731
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 1 cut(s) 138
ApaLI GTGCAC 1 cut(s) 750
ApeKI GCWGC 4 cut(s) 86, 287, 290, 395
ApoI RAATTY 4 cut(s) 357, 454, 479, 716
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 3 cut(s) 49, 434, 813
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 754
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 529, 754
BbvCI CCTCAGC 2 cut(s) 255, 492
BbvI GCAGC 4 cut(s) 98, 277, 299, 407
BccI CCATC 4 cut(s) 231, 478, 589, 895
BciT130I CCWGG 1 cut(s) 639
BclI TGATCA 2 cut(s) 3, 118
BcoDI GTCTC 2 cut(s) 155, 236
BfaI CTAG 3 cut(s) 101, 825, 917
BglI GCCNNNNNGGC 1 cut(s) 186
BisI GCNGC 5 cut(s) 87, 141, 288, 291, 396
BlpI GCTNAGC 1 cut(s) 763
BlsI GCNGC 5 cut(s) 88, 142, 289, 292, 397
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 639
BmrI ACTGGG 2 cut(s) 753, 797
BmsI GCATC 4 cut(s) 40, 117, 610, 724
BmuI ACTGGG 2 cut(s) 753, 797
BpiI GAAGAC 1 cut(s) 114
Bpu10I CCTNAGC 2 cut(s) 255, 492
Bpu1102I GCTNAGC 1 cut(s) 763
BsaHI GRCGYC 1 cut(s) 818
BsaJI CCNNGG 4 cut(s) 141, 221, 516, 880
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bsc4I CCNNNNNNNGG 6 cut(s) 222, 644, 680, 719, 830, 886
Bse1I ACTGG 3 cut(s) 748, 779, 792
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 4 cut(s) 141, 221, 516, 880
BseGI GGATG 4 cut(s) 55, 132, 739, 859
BseLI CCNNNNNNNGG 6 cut(s) 222, 644, 680, 719, 830, 886
BseMII CTCAG 4 cut(s) 78, 246, 247, 483
BseNI ACTGG 3 cut(s) 748, 779, 792
BseSI GKGCMC 1 cut(s) 754
BseXI GCAGC 4 cut(s) 98, 277, 299, 407
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 140
BsiHKAI GWGCWC 2 cut(s) 529, 754
BslI CCNNNNNNNGG 6 cut(s) 222, 644, 680, 719, 830, 886
BsmAI GTCTC 2 cut(s) 155, 236
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 529, 754
Bsp143I GATC 4 cut(s) 3, 118, 382, 723
Bsp1720I GCTNAGC 1 cut(s) 763
BspACI CCGC 5 cut(s) 141, 143, 599, 671, 890
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 4 cut(s) 77, 246, 247, 484
BspFNI CGCG 1 cut(s) 143
BspPI GGATC 1 cut(s) 731
BsrI ACTGG 3 cut(s) 748, 779, 792
BssECI CCNNGG 4 cut(s) 141, 221, 516, 880
BssMI GATC 4 cut(s) 3, 118, 382, 723
BssNI GRCGYC 1 cut(s) 818
BssT1I CCWWGG 3 cut(s) 221, 516, 880
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 6 cut(s) 404, 553, 595, 615, 898, 913
BstACI GRCGYC 1 cut(s) 818
BstC8I GCNNGC 2 cut(s) 98, 132
BstDEI CTNAG 5 cut(s) 64, 233, 255, 492, 763
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 4 cut(s) 55, 132, 739, 859
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 4 cut(s) 6, 121, 385, 726
BstMAI GTCTC 2 cut(s) 155, 236
BstMBI GATC 4 cut(s) 3, 118, 382, 723
BstMWI GCNNNNNNNGC 4 cut(s) 140, 186, 284, 815
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 637
BstSLI GKGCMC 1 cut(s) 754
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 4 cut(s) 98, 277, 299, 407
BstV2I GAAGAC 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 517
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 4 cut(s) 55, 132, 739, 859
BtsIMutI CAGTG 1 cut(s) 733
Cac8I GCNNGC 2 cut(s) 98, 132
CaiI CAGNNNCTG 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 193
Cfr42I CCGCGG 1 cut(s) 144
CseI GACGC 1 cut(s) 807
CviAII CATG 2 cut(s) 275, 386
CviJI RGCY 8 cut(s) 68, 134, 140, 189, 290, 368, 398, 762
CviKI_1 RGCY 8 cut(s) 68, 134, 140, 189, 290, 368, 398, 762
DdeI CTNAG 5 cut(s) 64, 233, 255, 492, 763
DpnI GATC 4 cut(s) 5, 120, 384, 725
DpnII GATC 4 cut(s) 3, 118, 382, 723
DraI TTTAAA 1 cut(s) 414
DraIII CACNNNGTG 1 cut(s) 758
EaeI YGGCCR 1 cut(s) 138
EciI GGCGGA 1 cut(s) 660
Eco130I CCWWGG 3 cut(s) 221, 516, 880
Eco47I GGWCC 1 cut(s) 193
EcoRI GAATTC 2 cut(s) 357, 479
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 3 cut(s) 221, 516, 880
ErhI CCWWGG 3 cut(s) 221, 516, 880
FaeI CATG 2 cut(s) 278, 389
FaiI YATR 7 cut(s) 17, 276, 297, 308, 387, 772, 811
FatI CATG 2 cut(s) 274, 385
FbaI TGATCA 2 cut(s) 3, 118
Fnu4HI GCNGC 5 cut(s) 87, 141, 288, 291, 396
FokI GGATG 4 cut(s) 62, 139, 746, 866
Fsp4HI GCNGC 5 cut(s) 87, 141, 288, 291, 396
FspBI CTAG 3 cut(s) 101, 825, 917
GluI GCNGC 5 cut(s) 87, 141, 288, 291, 396
HaeIII GGCC 1 cut(s) 140
HgaI GACGC 1 cut(s) 807
Hin1I GRCGYC 1 cut(s) 818
Hin1II CATG 2 cut(s) 278, 389
HinfI GANTC 6 cut(s) 62, 79, 175, 323, 677, 702
HphI GGTGA 3 cut(s) 49, 434, 813
Hpy166II GTNNAC 3 cut(s) 243, 407, 752
Hpy188I TCNGA 5 cut(s) 160, 193, 236, 328, 478
Hpy188III TCNNGA 5 cut(s) 354, 585, 681, 721, 851
Hpy8I GTNNAC 3 cut(s) 243, 407, 752
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 3 cut(s) 213, 880, 899
HpyCH4III ACNGT 6 cut(s) 404, 553, 595, 615, 898, 913
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 7 cut(s) 130, 278, 557, 623, 752, 780, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 186, 284, 815
HpyF3I CTNAG 5 cut(s) 64, 233, 255, 492, 763
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 818
Hsp92II CATG 2 cut(s) 278, 389
Ksp22I TGATCA 2 cut(s) 3, 118
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 4 cut(s) 3, 118, 382, 723
LmnI GCTCC 2 cut(s) 532, 673
Lsp1109I GCAGC 4 cut(s) 98, 277, 299, 407
LweI GCATC 4 cut(s) 40, 117, 610, 724
MaeI CTAG 3 cut(s) 101, 825, 917
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 5 cut(s) 167, 655, 739, 819, 892
MalI GATC 4 cut(s) 5, 120, 384, 725
MboI GATC 4 cut(s) 3, 118, 382, 723
MboII GAAGA 4 cut(s) 34, 119, 465, 697
MhlI GDGCHC 2 cut(s) 529, 754
MluCI AATT 5 cut(s) 357, 454, 479, 484, 716
MlyI GAGTC 3 cut(s) 56, 169, 686
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 7 cut(s) 97, 191, 250, 487, 540, 724, 821
MseI TTAA 2 cut(s) 390, 413
MslI CAYNNNNRTG 1 cut(s) 775
MspA1I CMGCKG 2 cut(s) 143, 290
MspR9I CCNGG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 639
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 140, 186, 284, 815
NdeII GATC 4 cut(s) 3, 118, 382, 723
NlaIII CATG 2 cut(s) 278, 389
NmuCI GTSAC 1 cut(s) 819
PfeI GAWTC 3 cut(s) 79, 323, 702
PflFI GACNNNGTC 1 cut(s) 349
PflMI CCANNNNNTGG 2 cut(s) 644, 680
PkrI GCNGC 5 cut(s) 88, 142, 289, 292, 397
PleI GAGTC 3 cut(s) 56, 169, 685
PpsI GAGTC 3 cut(s) 56, 169, 685
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspPI GGNCC 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 680
PsyI GACNNNGTC 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 775
SacII CCGCGG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 390, 413
SatI GCNGC 5 cut(s) 87, 141, 288, 291, 396
Sau3AI GATC 4 cut(s) 3, 118, 382, 723
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 3 cut(s) 56, 169, 686
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 2 cut(s) 529, 754
SfaNI GCATC 4 cut(s) 40, 117, 610, 724
Sfr303I CCGCGG 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 775
Sse9I AATT 5 cut(s) 357, 454, 479, 484, 716
SsiI CCGC 5 cut(s) 141, 143, 599, 671, 890
SspMI CTAG 3 cut(s) 101, 825, 917
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 3 cut(s) 221, 516, 880
TaaI ACNGT 6 cut(s) 404, 553, 595, 615, 898, 913
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 344, 627
TasI AATT 5 cut(s) 357, 454, 479, 484, 716
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 3 cut(s) 79, 323, 702
Tru1I TTAA 2 cut(s) 390, 413
Tru9I TTAA 2 cut(s) 390, 413
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 1 cut(s) 819
TseI GCWGC 4 cut(s) 86, 287, 290, 395
Tsp45I GTSAC 1 cut(s) 819
TspRI CASTG 1 cut(s) 733
Tth111I GACNNNGTC 1 cut(s) 349
Van91I CCANNNNNTGG 2 cut(s) 644, 680
VneI GTGCAC 1 cut(s) 750
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 4 cut(s) 357, 454, 479, 716
XspI CTAG 3 cut(s) 101, 825, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.