RLG00000012122

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001362
Physical Location & Seq
Forward (+)
15470039 .. 15471758
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012122

Sequence Viewer

Length: 912 bp
ATGGCAAAGAAACCGGTGAAATACTCTGTGGTGGATGCTTTCACCGACTCAGCTTTCAAGGGGAATCCAGCAGCAGTTTGCTTGCTAGAGGAAGACAGAGATGATCAATGGATGCAAGCTCTGGCCACGGAGTTCAATCTCTCCCAGACTGGTTACTTGACTCGCCTCAATGGCTCGGACCACTCGCCTTCTTTGGCTTCCACACCAAGGTTCAGTCTCAGATGGTTCACTCCTGTTGCTGAGGTTCAGCTTTGTGGTCATGCAACCTTAGCGGCTGCTTATACCCTGTTTATGTCTGGTTTGATTGATTCCGACGTTATTGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCATGTTAAGGCAGCTAACGGTTCACATTTAAAAAATGGTGAAGCACAAGATAACTATTTTATTGAACTGAATTTTCCTGCTGACCCATCTTCTGAATTCAATTCTGCTGAGGTTTCGTTTATTTCCAACGCCTTGGGGGGTGCTCCTGTGGTTGAAATAATGAGGACAGTTGCTGCAGATAATCTACTTGTGGTGCTTCCATCTGGAAAGACTGTTGCAGATTTGTTGCCACAGTTAGATGCAATTGAAAAATGTCCAGGTACTGGAGTGATTGTAACAGGAGTTGCTCCTCCAGAGTCTGGATTTGATTTTATCAGTAGATTCTTCTGCCCGAAATTAGGGATCAATGAGGATCCTGTTTGTGGGAGTGCACATTGTGGCTTGGCACCATACTGGTGCAAGAAACTGGGAAAGTGTGATGTTGTTGCATATCAGGCATCACCTAGAGGGGGAACACTATACATTCATCTGGATGAGAAAAATCAAAGGGTGCTACTCCGAGGGAAGGCGGTTACTGTGATGGAAGGAACTGTTCTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

304

Amino Acids

32.51

Weight (kDa)

5.27

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 11 - 299 5.8e-84 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 754
AccB7I CCANNNNNTGG 2 cut(s) 632, 668
AciI CCGC 2 cut(s) 272, 878
AclWI GGATC 3 cut(s) 716, 719, 729
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 3 cut(s) 342, 439, 464
AdeI CACNNNGTG 1 cut(s) 746
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 7 cut(s) 207, 632, 668, 707, 731, 818, 874
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 6 cut(s) 58, 136, 434, 469, 524, 617
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 5 cut(s) 53, 119, 250, 353, 383
AluI AGCT 5 cut(s) 53, 119, 250, 353, 383
Alw21I GWGCWC 2 cut(s) 514, 742
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 1 cut(s) 738
AlwI GGATC 3 cut(s) 716, 719, 729
AlwNI CAGNNNCTG 3 cut(s) 542, 632, 668
AoxI GGCC 1 cut(s) 123
ApaLI GTGCAC 1 cut(s) 738
ApeKI GCWGC 4 cut(s) 71, 275, 380, 542
ApoI RAATTY 3 cut(s) 342, 439, 464
AsiGI ACCGGT 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 4 cut(s) 28, 34, 419, 801
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 742
BaeI ACNNNNGTAYC 2 cut(s) 621, 654
BalI TGGCCA 1 cut(s) 125
BamHI GGATCC 1 cut(s) 721
BanI GGYRCC 1 cut(s) 754
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 514, 742
BbvCI CCTCAGC 2 cut(s) 240, 477
BbvI GCAGC 4 cut(s) 83, 262, 392, 529
BccI CCATC 4 cut(s) 216, 463, 577, 883
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 3 cut(s) 86, 813, 905
BfmI CTRYAG 1 cut(s) 543
BglI GCCNNNNNGGC 1 cut(s) 171
BisI GCNGC 5 cut(s) 72, 273, 276, 381, 543
BlsI GCNGC 5 cut(s) 73, 274, 277, 382, 544
Bme1390I CCNGG 1 cut(s) 627
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 723, 756
BmrFI CCNGG 1 cut(s) 627
BmrI ACTGGG 1 cut(s) 785
BmsI GCATC 4 cut(s) 25, 102, 598, 815
BmuI ACTGGG 1 cut(s) 785
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 2 cut(s) 645, 654
Bpu10I CCTNAGC 3 cut(s) 240, 268, 477
BsaJI CCNNGG 4 cut(s) 126, 206, 501, 868
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 7 cut(s) 207, 632, 668, 707, 731, 818, 874
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 4 cut(s) 154, 637, 767, 780
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 4 cut(s) 126, 206, 501, 868
BseGI GGATG 3 cut(s) 40, 117, 847
BseLI CCNNNNNNNGG 7 cut(s) 207, 632, 668, 707, 731, 818, 874
BseMII CTCAG 4 cut(s) 63, 231, 232, 468
BseNI ACTGG 4 cut(s) 154, 637, 767, 780
BseRI GAGGAG 1 cut(s) 648
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 4 cut(s) 83, 262, 392, 529
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 754
BshTI ACCGGT 1 cut(s) 13
BsiHKAI GWGCWC 2 cut(s) 514, 742
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 7 cut(s) 207, 632, 668, 707, 731, 818, 874
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 514, 742
Bsp143I GATC 4 cut(s) 103, 367, 711, 721
BspACI CCGC 2 cut(s) 272, 878
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 4 cut(s) 62, 231, 232, 469
BspLI GGNNCC 2 cut(s) 723, 756
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 3 cut(s) 716, 719, 729
BspT107I GGYRCC 1 cut(s) 754
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 4 cut(s) 154, 637, 767, 780
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 4 cut(s) 126, 206, 501, 868
BssMI GATC 4 cut(s) 103, 367, 711, 721
BssT1I CCWWGG 2 cut(s) 206, 501
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 6 cut(s) 389, 538, 583, 603, 886, 901
BstC8I GCNNGC 2 cut(s) 83, 117
BstDEI CTNAG 5 cut(s) 49, 218, 240, 268, 477
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 3 cut(s) 40, 117, 847
BstKTI GATC 4 cut(s) 106, 370, 714, 724
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 103, 367, 711, 721
BstMWI GCNNNNNNNGC 3 cut(s) 171, 269, 803
BstNI CCWGG 1 cut(s) 627
BstSCI CCNGG 1 cut(s) 625
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 742
BstV1I GCAGC 4 cut(s) 83, 262, 392, 529
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 721
BstXI CCANNNNNNTGG 1 cut(s) 502
BstYI RGATCY 1 cut(s) 721
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 3 cut(s) 40, 117, 847
Cac8I GCNNGC 2 cut(s) 83, 117
CaiI CAGNNNCTG 3 cut(s) 542, 632, 668
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 630
CspAI ACCGGT 1 cut(s) 13
CviAII CATG 2 cut(s) 260, 371
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 5 cut(s) 49, 218, 240, 268, 477
DpnI GATC 4 cut(s) 105, 369, 713, 723
DpnII GATC 4 cut(s) 103, 367, 711, 721
DraI TTTAAA 1 cut(s) 399
DraIII CACNNNGTG 1 cut(s) 746
EaeI YGGCCR 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 206, 501
Eco47I GGWCC 1 cut(s) 178
EcoRI GAATTC 2 cut(s) 342, 464
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 206, 501
ErhI CCWWGG 2 cut(s) 206, 501
FaeI CATG 2 cut(s) 263, 374
FaiI YATR 7 cut(s) 261, 282, 293, 372, 760, 799, 829
FatI CATG 2 cut(s) 259, 370
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 5 cut(s) 72, 273, 276, 381, 543
FokI GGATG 3 cut(s) 47, 124, 854
Fsp4HI GCNGC 5 cut(s) 72, 273, 276, 381, 543
FspBI CTAG 3 cut(s) 86, 813, 905
GluI GCNGC 5 cut(s) 72, 273, 276, 381, 543
GsuI CTGGAG 2 cut(s) 645, 654
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 14
Hin1II CATG 2 cut(s) 263, 374
HinfI GANTC 6 cut(s) 47, 64, 160, 308, 665, 690
HpaII CCGG 1 cut(s) 14
HphI GGTGA 4 cut(s) 28, 34, 419, 801
Hpy166II GTNNAC 3 cut(s) 228, 392, 740
Hpy188I TCNGA 5 cut(s) 178, 221, 313, 463, 869
Hpy188III TCNNGA 5 cut(s) 339, 573, 662, 669, 839
Hpy8I GTNNAC 3 cut(s) 228, 392, 740
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 198, 868, 887
HpyCH4III ACNGT 6 cut(s) 389, 538, 583, 603, 886, 901
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 8 cut(s) 115, 263, 545, 587, 611, 740, 768, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 269, 803
HpyF3I CTNAG 5 cut(s) 49, 218, 240, 268, 477
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 263, 374
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 4 cut(s) 103, 367, 711, 721
LmnI GCTCC 2 cut(s) 517, 661
Lsp1109I GCAGC 4 cut(s) 83, 262, 392, 529
LweI GCATC 4 cut(s) 25, 102, 598, 815
MaeI CTAG 3 cut(s) 86, 813, 905
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 152, 643, 880
MalI GATC 4 cut(s) 105, 369, 713, 723
MboI GATC 4 cut(s) 103, 367, 711, 721
MboII GAAGA 3 cut(s) 104, 450, 685
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 2 cut(s) 514, 742
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 6 cut(s) 342, 439, 464, 469, 612, 704
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 3 cut(s) 41, 154, 674
MmeI TCCRAC 2 cut(s) 336, 519
MnlI CCTC 9 cut(s) 82, 176, 235, 472, 525, 669, 712, 809, 863
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
MseI TTAA 2 cut(s) 375, 398
MslI CAYNNNNRTG 2 cut(s) 763, 840
Msp20I TGGCCA 1 cut(s) 125
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 627
MunI CAATTG 1 cut(s) 612
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 3 cut(s) 171, 269, 803
NdeII GATC 4 cut(s) 103, 367, 711, 721
NlaIII CATG 2 cut(s) 263, 374
NlaIV GGNNCC 2 cut(s) 723, 756
PfeI GAWTC 3 cut(s) 64, 308, 690
PflFI GACNNNGTC 1 cut(s) 334
PflMI CCANNNNNTGG 2 cut(s) 632, 668
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 5 cut(s) 73, 274, 277, 382, 544
PleI GAGTC 3 cut(s) 41, 154, 673
PpsI GAGTC 3 cut(s) 41, 154, 673
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 723, 756
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 3 cut(s) 542, 632, 668
PsuI RGATCY 1 cut(s) 721
PsyI GACNNNGTC 1 cut(s) 334
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
RseI CAYNNNNRTG 2 cut(s) 763, 840
SaqAI TTAA 2 cut(s) 375, 398
SatI GCNGC 5 cut(s) 72, 273, 276, 381, 543
Sau3AI GATC 4 cut(s) 103, 367, 711, 721
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 3 cut(s) 41, 154, 674
ScrFI CCNGG 1 cut(s) 627
SduI GDGCHC 2 cut(s) 514, 742
SfaNI GCATC 4 cut(s) 25, 102, 598, 815
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 763, 840
Sse9I AATT 6 cut(s) 342, 439, 464, 469, 612, 704
SsiI CCGC 2 cut(s) 272, 878
SspMI CTAG 3 cut(s) 86, 813, 905
StyD4I CCNGG 1 cut(s) 625
StyI CCWWGG 2 cut(s) 206, 501
TaaI ACNGT 6 cut(s) 389, 538, 583, 603, 886, 901
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 329
TasI AATT 6 cut(s) 342, 439, 464, 469, 612, 704
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 3 cut(s) 64, 308, 690
Tru1I TTAA 2 cut(s) 375, 398
Tru9I TTAA 2 cut(s) 375, 398
TseI GCWGC 4 cut(s) 71, 275, 380, 542
TspDTI ATGAA 1 cut(s) 824
TspGWI ACGGA 1 cut(s) 143
Tth111I GACNNNGTC 1 cut(s) 334
Van91I CCANNNNNTGG 2 cut(s) 632, 668
VneI GTGCAC 1 cut(s) 738
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 3 cut(s) 342, 439, 464
XspI CTAG 3 cut(s) 86, 813, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.