AT4G02860

Phenazine biosynthesis PhzC PhzF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001362
Physical Location & Seq
Reverse (-)
1268618 .. 1270539
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02860.1

Sequence Viewer

Length: 942 bp
ATGTGTGATGGAAAGAAAGAAAAAAACATAACTTTGCTCAAAAAGATCGATCGAGATATGGGGAAGAAGAAAGGTGTCAAGTACTTTGTGGTGGATGCTTTCACTGATTCGGCTTTCAAAGGGAATCCAGCTGCTGTTTGTTTTCTCAACGACGATAACGAGAGAGATGACACGTGGCTTCAGTCTCTCGCCGCCGAATTCAACATCTCCGAAACTTGTTTTCTTATTCCCATCACTGGTTTCCAAGCTCGCTTCAGTCTACGCTGGTTTACCCCTTTAGCCGAGGTGGATCTCTGTGGTCATGCAACTTTGGCATCTGCTCATTGTCTCTTCTCAAATGGTTTGGTTGATTCAGACATGGTTGAGTTTGTCACAAGATCAGGGATTCTTACAGCCAAGCGTGTTTCAGATACTTCAGAGCTCAGTGATGGTGAAGTGAAAGGAGGAACCTTTTTGATCGAATTGAATTTCCCTGTGGTTACAACTTGTGATGTTAATCTCAGTGATGTATCCTCTTCTATGATCACCAAGGCCTTGAACGGAGCTACCATTGTTGATATAAAAGCTACTGCAACAAACAACATCCTCGTTGTGCTTCCATCTAAGGAATCTGTCACTGAATTGCAACCAAGAATGGATGATATATTGAAATGCCCCTGTGATGGCATAATTGTGACAGCTGCTGGTTCTACAGGATCGTCCTATGATTTTTACAGTCGGTACTTTGCTCCTAAGTTCGGAGTTGATGAGGACCCTGTTTGTGGAAGTGCACATTGTGCATTGGCACATTACTGGAGCATCAAGATGAATAAGTTTGATTTCTTAGCCTACCAAGCTTCGAGTAGGAGTGGAACGATAAGGATTCATCTAGACAAGGAGAAGCAGAGGGTTCTCCTGAGAGGCAAAGCCGTTACTGTGATGGAAGGCCATGTCTTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

313

Amino Acids

34.32

Weight (kDa)

5.73

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 31 - 309 7.8e-105 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 934
AccI GTMKAC 1 cut(s) 259
AciI CCGC 1 cut(s) 192
AclWI GGATC 2 cut(s) 297, 703
AcsI RAATTY 2 cut(s) 197, 466
AcuI CTGAAG 3 cut(s) 164, 238, 399
AcvI CACGTG 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 776
AfaI GTAC 2 cut(s) 83, 722
AfiI CCNNNNNNNGG 5 cut(s) 236, 662, 737, 761, 934
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 5 cut(s) 118, 202, 466, 538, 649
AluBI AGCT 7 cut(s) 131, 248, 421, 545, 566, 680, 836
AluI AGCT 7 cut(s) 131, 248, 421, 545, 566, 680, 836
Alw21I GWGCWC 2 cut(s) 423, 772
Alw26I GTCTC 2 cut(s) 189, 332
Alw44I GTGCAC 1 cut(s) 768
AlwI GGATC 2 cut(s) 297, 703
AlwNI CAGNNNCTG 2 cut(s) 134, 683
AoxI GGCC 2 cut(s) 531, 925
ApaLI GTGCAC 1 cut(s) 768
ApeKI GCWGC 2 cut(s) 131, 680
ApoI RAATTY 2 cut(s) 197, 466
AspS9I GGNCC 1 cut(s) 751
AsuHPI GGTGA 2 cut(s) 443, 517
AvaII GGWCC 1 cut(s) 751
BaeGI GKGCMC 1 cut(s) 772
BanII GRGCYC 1 cut(s) 423
BbrPI CACGTG 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 423, 772
BbvI GCAGC 2 cut(s) 118, 667
BccI CCATC 6 cut(s) 2, 239, 422, 607, 656, 913
BceAI ACGGC 1 cut(s) 893
BciVI GTATCC 1 cut(s) 520
BclI TGATCA 1 cut(s) 522
BcoDI GTCTC 2 cut(s) 189, 332
BfaI CTAG 1 cut(s) 869
BfmI CTRYAG 1 cut(s) 690
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 3 cut(s) 132, 192, 681
BlsI GCNGC 3 cut(s) 133, 193, 682
BmcAI AGTACT 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 751
BmgT120I GGNCC 1 cut(s) 751
BmiI GGNNCC 2 cut(s) 448, 753
BmsI GCATC 3 cut(s) 85, 323, 807
BpmI CTGGAG 1 cut(s) 814
Bsa29I ATCGAT 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 2 cut(s) 282, 528
Bsc4I CCNNNNNNNGG 5 cut(s) 236, 662, 737, 761, 934
Bse1I ACTGG 2 cut(s) 241, 797
Bse8I GATNNNNATC 1 cut(s) 495
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 282, 528
BseGI GGATG 3 cut(s) 100, 582, 643
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 5 cut(s) 236, 662, 737, 761, 934
BseMII CTCAG 3 cut(s) 436, 514, 887
BseNI ACTGG 2 cut(s) 241, 797
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 2 cut(s) 118, 667
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 2 cut(s) 533, 927
BshVI ATCGAT 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 2 cut(s) 423, 772
BslI CCNNNNNNNGG 5 cut(s) 236, 662, 737, 761, 934
BsmAI GTCTC 2 cut(s) 189, 332
BsnI GGCC 2 cut(s) 533, 927
Bsp1286I GDGCHC 2 cut(s) 423, 772
Bsp143I GATC 7 cut(s) 45, 49, 289, 377, 456, 522, 695
BspACI CCGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 533, 927
BspCNI CTCAG 3 cut(s) 435, 513, 888
BspDI ATCGAT 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 448, 753
BspPI GGATC 2 cut(s) 297, 703
BsrI ACTGG 2 cut(s) 241, 797
BssECI CCNNGG 2 cut(s) 282, 528
BssMI GATC 7 cut(s) 45, 49, 289, 377, 456, 522, 695
BssT1I CCWWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 716, 916
Bst6I CTCTTC 2 cut(s) 335, 520
BstAPI GCANNNNNTGC 1 cut(s) 776
BstBAI YACGTR 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 6 cut(s) 422, 500, 603, 732, 823, 896
BstF5I GGATG 3 cut(s) 100, 582, 643
BstKTI GATC 7 cut(s) 48, 52, 292, 380, 459, 525, 698
BstMAI GTCTC 2 cut(s) 189, 332
BstMBI GATC 7 cut(s) 45, 49, 289, 377, 456, 522, 695
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 3 cut(s) 311, 776, 833
BstSFI CTRYAG 1 cut(s) 690
BstSLI GKGCMC 1 cut(s) 772
BstV1I GCAGC 2 cut(s) 118, 667
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 48
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 2 cut(s) 533, 927
BsuTUI ATCGAT 1 cut(s) 48
BtsCI GGATG 3 cut(s) 100, 582, 643
BtsIMutI CAGTG 5 cut(s) 102, 234, 430, 508, 615
Cac8I GCNNGC 1 cut(s) 250
CaiI CAGNNNCTG 2 cut(s) 134, 683
Cfr13I GGNCC 1 cut(s) 751
ClaI ATCGAT 1 cut(s) 48
Csp6I GTAC 2 cut(s) 82, 721
CviAII CATG 3 cut(s) 302, 358, 929
CviQI GTAC 2 cut(s) 82, 721
DdeI CTNAG 6 cut(s) 422, 500, 603, 732, 823, 896
DpnI GATC 7 cut(s) 47, 51, 291, 379, 458, 524, 697
DpnII GATC 7 cut(s) 45, 49, 289, 377, 456, 522, 695
DraIII CACNNNGTG 1 cut(s) 776
Eam1104I CTCTTC 2 cut(s) 335, 520
EarI CTCTTC 2 cut(s) 335, 520
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 528
Eco147I AGGCCT 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 751
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 3 cut(s) 164, 238, 399
Eco72I CACGTG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 3 cut(s) 305, 361, 932
FatI CATG 3 cut(s) 301, 357, 928
FbaI TGATCA 1 cut(s) 522
FblI GTMKAC 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 132, 192, 681
FokI GGATG 3 cut(s) 107, 569, 650
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 3 cut(s) 132, 192, 681
FspBI CTAG 1 cut(s) 869
GluI GCNGC 3 cut(s) 132, 192, 681
GsuI CTGGAG 1 cut(s) 814
HaeIII GGCC 2 cut(s) 533, 927
Hin1II CATG 3 cut(s) 305, 361, 932
HindIII AAGCTT 1 cut(s) 834
HinfI GANTC 6 cut(s) 107, 124, 350, 385, 608, 862
HphI GGTGA 2 cut(s) 443, 517
Hpy166II GTNNAC 3 cut(s) 260, 270, 770
Hpy188I TCNGA 6 cut(s) 211, 355, 409, 418, 740, 941
Hpy188III TCNNGA 4 cut(s) 53, 802, 869, 895
Hpy8I GTNNAC 3 cut(s) 260, 270, 770
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 917
HpyCH4III ACNGT 2 cut(s) 716, 916
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 5 cut(s) 305, 572, 625, 770, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 776, 833
HpyF3I CTNAG 6 cut(s) 422, 500, 603, 732, 823, 896
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 3 cut(s) 305, 361, 932
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 7 cut(s) 45, 49, 289, 377, 456, 522, 695
LmnI GCTCC 3 cut(s) 542, 733, 795
Lsp1109I GCAGC 2 cut(s) 118, 667
LweI GCATC 3 cut(s) 85, 323, 807
MaeI CTAG 1 cut(s) 869
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 5 cut(s) 370, 478, 613, 673, 910
MalI GATC 7 cut(s) 47, 51, 291, 379, 458, 524, 697
MboI GATC 7 cut(s) 45, 49, 289, 377, 456, 522, 695
MboII GAAGA 4 cut(s) 76, 79, 322, 507
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 423, 772
MluCI AATT 5 cut(s) 197, 461, 466, 620, 669
MnlI CCTC 7 cut(s) 277, 437, 523, 596, 742, 879, 893
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 2 cut(s) 671, 803
MspA1I CMGCKG 2 cut(s) 131, 680
MwoI GCNNNNNNNGC 3 cut(s) 311, 776, 833
NdeII GATC 7 cut(s) 45, 49, 289, 377, 456, 522, 695
NlaIII CATG 3 cut(s) 305, 361, 932
NlaIV GGNNCC 2 cut(s) 448, 753
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 3 cut(s) 370, 613, 673
PceI AGGCCT 1 cut(s) 533
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 6 cut(s) 107, 124, 350, 385, 608, 862
PflMI CCANNNNNTGG 1 cut(s) 934
PkrI GCNGC 3 cut(s) 133, 193, 682
Ple19I CGATCG 1 cut(s) 52
PmaCI CACGTG 1 cut(s) 174
PmlI CACGTG 1 cut(s) 174
Ppu21I YACGTR 1 cut(s) 174
PpuMI RGGWCCY 1 cut(s) 751
Psp124BI GAGCTC 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 751
PspCI CACGTG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 448, 753
PspPI GGNCC 1 cut(s) 751
PspPPI RGGWCCY 1 cut(s) 751
PstNI CAGNNNCTG 2 cut(s) 134, 683
PsuI RGATCY 1 cut(s) 289
PvuI CGATCG 1 cut(s) 52
PvuII CAGCTG 2 cut(s) 131, 680
RsaI GTAC 2 cut(s) 83, 722
RsaNI GTAC 2 cut(s) 82, 721
RseI CAYNNNNRTG 2 cut(s) 671, 803
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 3 cut(s) 132, 192, 681
Sau3AI GATC 7 cut(s) 45, 49, 289, 377, 456, 522, 695
Sau96I GGNCC 1 cut(s) 751
ScaI AGTACT 1 cut(s) 83
SduI GDGCHC 2 cut(s) 423, 772
SfaNI GCATC 3 cut(s) 85, 323, 807
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 751
SmiMI CAYNNNNRTG 2 cut(s) 671, 803
Sse9I AATT 5 cut(s) 197, 461, 466, 620, 669
SseBI AGGCCT 1 cut(s) 533
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 869
SstI GAGCTC 1 cut(s) 423
StuI AGGCCT 1 cut(s) 533
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 2 cut(s) 716, 916
TaiI ACGT 1 cut(s) 176
TaqI TCGA 4 cut(s) 48, 52, 459, 839
TasI AATT 5 cut(s) 197, 461, 466, 620, 669
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 6 cut(s) 107, 124, 350, 385, 608, 862
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 5 cut(s) 109, 241, 430, 508, 622
TseFI GTSAC 3 cut(s) 370, 613, 673
TseI GCWGC 2 cut(s) 131, 680
Tsp45I GTSAC 3 cut(s) 370, 613, 673
TspDTI ATGAA 2 cut(s) 821, 854
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 5 cut(s) 109, 241, 430, 508, 622
Van91I CCANNNNNTGG 1 cut(s) 934
VneI GTGCAC 1 cut(s) 768
VpaK11BI GGWCC 1 cut(s) 751
XapI RAATTY 2 cut(s) 197, 466
XbaI TCTAGA 1 cut(s) 868
XmiI GTMKAC 1 cut(s) 259
XspI CTAG 1 cut(s) 869
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.