Rh6BG337900

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001362
Physical Location & Seq
Reverse (-)
57072039 .. 57074510
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG337900.1

Sequence Viewer

Length: 924 bp
ATGATCATTTCATCTATGGCGAAGAAACCTGTGAAATACTCTCTGGTGGATGCTTTCACCGACTCAGCTTTCAAGGGGAATCCAGCAGCAGTTTGCTTGCTAGAGGAAGACAGAGATGATCAATGGATGCAAGCTCTGGCCGCGGAGTTCAATCTCTCTGCGACAGGTTACTTGACTCGCCTCAATGGCTCGGACCACTCGCCTTCTTTGACTTCCACACCAAGGTTCAAACTCAGATGGTTTACTCCTGTTGCAGAGGTTGAGCTTTGTGGTCATGCAACATTAGCGGCTGCTTATACCCTGTTTATGTCTGGTTTGATTGATTCCGACGTTATAGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCATGTTAAGGCAGCCAACGGTTCACATTTAAAAAATGGTGAAGCACAAGATAACTATTTTATTGAACTGAATTTTCCTTCTGACCCATCTTCTGAATTCAATTCTGCCGAGGTTTCGTTTATTTCCAACGCCTTGGGGGGTGCTCCTGTTGTTGAAATAATGAGGACAGTTGCAGATAATCTCCTTGTGGTGCTTCCATCTGGAAAGACTGTTGCAGATTTGTTGCCACAGTTTGATGCAATCGAAAAATGTCCAGGTACTGGAGTGATTGTAACAGGAGTTGCTCCGCCAGAGTCTGGATTTGATTTTATCAGTAGATTCTTCTGCCCGAAATTCGGGATTAGTGAGGATGCTGTTACTGGGAGTGCACATTGTGGCTTAGCACCATACTGGTGCAAGAAACTGGGAAAGTGTGATGTTGTTGCATATCAGGCATCACCTAGAGGGGGAACACTATACATTCATCTGGATGAGAAAAATCAAAGGGTGCTACTCCGAGGGAAGGCGGTTACTGTGATGGAAGGAACTGTTCTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

307

Amino Acids

32.99

Weight (kDa)

5.29

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 16 - 303 1.5e-83 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 644, 680
AccII CGCG 1 cut(s) 143
AciI CCGC 5 cut(s) 141, 143, 287, 671, 890
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 4 cut(s) 357, 454, 479, 716
AdeI CACNNNGTG 1 cut(s) 758
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 6 cut(s) 222, 644, 680, 719, 830, 886
AgsI TTSAA 6 cut(s) 73, 151, 229, 449, 484, 539
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 4 cut(s) 68, 134, 265, 368
AluI AGCT 4 cut(s) 68, 134, 265, 368
Alw21I GWGCWC 2 cut(s) 529, 754
Alw44I GTGCAC 1 cut(s) 750
AlwNI CAGNNNCTG 2 cut(s) 644, 680
AoxI GGCC 1 cut(s) 138
ApaLI GTGCAC 1 cut(s) 750
ApeKI GCWGC 3 cut(s) 86, 290, 395
ApoI RAATTY 4 cut(s) 357, 454, 479, 716
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 3 cut(s) 49, 434, 813
AvaII GGWCC 1 cut(s) 193
BaeGI GKGCMC 1 cut(s) 754
BaeI ACNNNNGTAYC 2 cut(s) 633, 666
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 529, 754
BbvI GCAGC 3 cut(s) 98, 277, 407
BccI CCATC 4 cut(s) 231, 478, 589, 895
BciT130I CCWGG 1 cut(s) 639
BclI TGATCA 2 cut(s) 3, 118
BfaI CTAG 3 cut(s) 101, 825, 917
BglI GCCNNNNNGGC 1 cut(s) 186
BisI GCNGC 5 cut(s) 87, 141, 288, 291, 396
BlpI GCTNAGC 1 cut(s) 763
BlsI GCNGC 5 cut(s) 88, 142, 289, 292, 397
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 639
BmrI ACTGGG 2 cut(s) 753, 797
BmsI GCATC 5 cut(s) 40, 117, 610, 724, 827
BmuI ACTGGG 2 cut(s) 753, 797
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 666
Bpu1102I GCTNAGC 1 cut(s) 763
BsaJI CCNNGG 5 cut(s) 141, 221, 492, 516, 880
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bsc4I CCNNNNNNNGG 6 cut(s) 222, 644, 680, 719, 830, 886
Bse1I ACTGG 4 cut(s) 649, 748, 779, 792
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 5 cut(s) 141, 221, 492, 516, 880
BseGI GGATG 4 cut(s) 55, 132, 739, 859
BseLI CCNNNNNNNGG 6 cut(s) 222, 644, 680, 719, 830, 886
BseMII CTCAG 2 cut(s) 78, 247
BseNI ACTGG 4 cut(s) 649, 748, 779, 792
BseSI GKGCMC 1 cut(s) 754
BseXI GCAGC 3 cut(s) 98, 277, 407
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 140
BsiHKAI GWGCWC 2 cut(s) 529, 754
BslI CCNNNNNNNGG 6 cut(s) 222, 644, 680, 719, 830, 886
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 529, 754
Bsp143I GATC 3 cut(s) 3, 118, 382
Bsp1720I GCTNAGC 1 cut(s) 763
BspACI CCGC 5 cut(s) 141, 143, 287, 671, 890
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 77, 246
BspFNI CGCG 1 cut(s) 143
BsrI ACTGG 4 cut(s) 649, 748, 779, 792
BssECI CCNNGG 5 cut(s) 141, 221, 492, 516, 880
BssMI GATC 3 cut(s) 3, 118, 382
BssT1I CCWWGG 2 cut(s) 221, 516
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 6 cut(s) 404, 553, 595, 615, 898, 913
BstC8I GCNNGC 2 cut(s) 98, 132
BstDEI CTNAG 3 cut(s) 64, 233, 763
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 4 cut(s) 55, 132, 739, 859
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 3 cut(s) 6, 121, 385
BstMBI GATC 3 cut(s) 3, 118, 382
BstMWI GCNNNNNNNGC 4 cut(s) 140, 186, 284, 815
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 637
BstSLI GKGCMC 1 cut(s) 754
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 98, 277, 407
BstV2I GAAGAC 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 517
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 4 cut(s) 55, 132, 739, 859
Cac8I GCNNGC 2 cut(s) 98, 132
CaiI CAGNNNCTG 2 cut(s) 644, 680
Cfr13I GGNCC 1 cut(s) 193
Cfr42I CCGCGG 1 cut(s) 144
Csp6I GTAC 1 cut(s) 642
CviAII CATG 2 cut(s) 275, 386
CviJI RGCY 9 cut(s) 68, 134, 140, 189, 265, 290, 368, 398, 762
CviKI_1 RGCY 9 cut(s) 68, 134, 140, 189, 265, 290, 368, 398, 762
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 3 cut(s) 64, 233, 763
DpnI GATC 3 cut(s) 5, 120, 384
DpnII GATC 3 cut(s) 3, 118, 382
DraI TTTAAA 1 cut(s) 414
DraIII CACNNNGTG 1 cut(s) 758
EaeI YGGCCR 1 cut(s) 138
EciI GGCGGA 1 cut(s) 660
Eco130I CCWWGG 2 cut(s) 221, 516
Eco47I GGWCC 1 cut(s) 193
EcoRI GAATTC 2 cut(s) 357, 479
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 221, 516
ErhI CCWWGG 2 cut(s) 221, 516
FaeI CATG 2 cut(s) 278, 389
FaiI YATR 9 cut(s) 17, 276, 297, 308, 335, 387, 772, 811, 841
FatI CATG 2 cut(s) 274, 385
FbaI TGATCA 2 cut(s) 3, 118
Fnu4HI GCNGC 5 cut(s) 87, 141, 288, 291, 396
FokI GGATG 4 cut(s) 62, 139, 746, 866
Fsp4HI GCNGC 5 cut(s) 87, 141, 288, 291, 396
FspBI CTAG 3 cut(s) 101, 825, 917
GluI GCNGC 5 cut(s) 87, 141, 288, 291, 396
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 2 cut(s) 278, 389
HinfI GANTC 6 cut(s) 62, 79, 175, 323, 677, 702
HphI GGTGA 3 cut(s) 49, 434, 813
Hpy166II GTNNAC 3 cut(s) 243, 407, 752
Hpy188I TCNGA 6 cut(s) 193, 236, 328, 466, 478, 881
Hpy188III TCNNGA 5 cut(s) 354, 585, 681, 721, 851
Hpy8I GTNNAC 3 cut(s) 243, 407, 752
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 4 cut(s) 213, 471, 880, 899
HpyCH4III ACNGT 6 cut(s) 404, 553, 595, 615, 898, 913
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 9 cut(s) 130, 254, 278, 557, 599, 623, 752, 780, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 186, 284, 815
HpyF3I CTNAG 3 cut(s) 64, 233, 763
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 2 cut(s) 278, 389
Ksp22I TGATCA 2 cut(s) 3, 118
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 3 cut(s) 3, 118, 382
LmnI GCTCC 2 cut(s) 532, 673
Lsp1109I GCAGC 3 cut(s) 98, 277, 407
LweI GCATC 5 cut(s) 40, 117, 610, 724, 827
MaeI CTAG 3 cut(s) 101, 825, 917
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 4 cut(s) 167, 655, 739, 892
MalI GATC 3 cut(s) 5, 120, 384
MboI GATC 3 cut(s) 3, 118, 382
MboII GAAGA 4 cut(s) 34, 119, 465, 697
MhlI GDGCHC 2 cut(s) 529, 754
MluCI AATT 5 cut(s) 357, 454, 479, 484, 716
MlyI GAGTC 3 cut(s) 56, 169, 686
MmeI TCCRAC 2 cut(s) 351, 534
MnlI CCTC 8 cut(s) 97, 191, 250, 487, 540, 724, 821, 875
MseI TTAA 2 cut(s) 390, 413
MslI CAYNNNNRTG 2 cut(s) 775, 852
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 639
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 140, 186, 284, 815
NdeII GATC 3 cut(s) 3, 118, 382
NlaIII CATG 2 cut(s) 278, 389
NmeAIII GCCGAG 1 cut(s) 517
PfeI GAWTC 3 cut(s) 79, 323, 702
PflFI GACNNNGTC 1 cut(s) 349
PflMI CCANNNNNTGG 2 cut(s) 644, 680
PkrI GCNGC 5 cut(s) 88, 142, 289, 292, 397
PleI GAGTC 3 cut(s) 56, 169, 685
PpsI GAGTC 3 cut(s) 56, 169, 685
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspPI GGNCC 1 cut(s) 193
PstNI CAGNNNCTG 2 cut(s) 644, 680
PsyI GACNNNGTC 1 cut(s) 349
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
RseI CAYNNNNRTG 2 cut(s) 775, 852
SacII CCGCGG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 390, 413
SatI GCNGC 5 cut(s) 87, 141, 288, 291, 396
Sau3AI GATC 3 cut(s) 3, 118, 382
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 3 cut(s) 56, 169, 686
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 2 cut(s) 529, 754
SfaNI GCATC 5 cut(s) 40, 117, 610, 724, 827
Sfr303I CCGCGG 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 2 cut(s) 775, 852
Sse9I AATT 5 cut(s) 357, 454, 479, 484, 716
SsiI CCGC 5 cut(s) 141, 143, 287, 671, 890
SspMI CTAG 3 cut(s) 101, 825, 917
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 2 cut(s) 221, 516
TaaI ACNGT 6 cut(s) 404, 553, 595, 615, 898, 913
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 344, 627
TasI AATT 5 cut(s) 357, 454, 479, 484, 716
TauI GCSGC 2 cut(s) 143, 290
TfiI GAWTC 3 cut(s) 79, 323, 702
Tru1I TTAA 2 cut(s) 390, 413
Tru9I TTAA 2 cut(s) 390, 413
TseI GCWGC 3 cut(s) 86, 290, 395
TspDTI ATGAA 1 cut(s) 836
Tth111I GACNNNGTC 1 cut(s) 349
Van91I CCANNNNNTGG 2 cut(s) 644, 680
VneI GTGCAC 1 cut(s) 750
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 4 cut(s) 357, 454, 479, 716
XspI CTAG 3 cut(s) 101, 825, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.