Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001362

Physical Location & Seq

Genomic Coordinates Reverse (-)

21227420 .. 21231667

Gene Structure 4248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G243200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGAAGAAACCAGTGAAATACTCCGTGGTGGATGCTTTCACTGAATCAGCTTTCAAGGGAAACCCAGCAGCGGTTTGCTTGTTAGAAGAAGATAAAGACGACCAGTGGTTGCAGGCCGTGGCCTCCGAGTTCAATCTATCCGAGACTTGTTATCTGACTCGGGTCACCGATTCCACGCCTACTTCAGCTCCTAGGTTTGGTCTCAGATGGTTCACGCCTTCCAACGAGGTTGAGCTTTGTGGTCATGCAACATTAGCGGCTGCATACACTCTCTTTAAGTCTGGTTTGATAAATTCCAACTTTATTGAGTTTGCTACATTATCTGGAATCCTAACAGCTAAAAAGGTTCCAGATGTTAAGACAGCCAATGGTTCAAATAATATTCAAAATGGTGAAGCACAAAAGTCCTATTTCATTGAACTGAATTTTCCTGCCGCCCCATCTTATGAATTCAACTCTAGTGAGGTTTCATTGATCTCCGAGGCCTTGGATGGTGCTTCTATGATTGATATAAGGAAGACACATGTCACCGACGATCTACTTGTTGTGCTTCCATCAGCAAAAGCTGTGGTAGATTTACAGCCAAAGTTTGATGCGATCCAAAAATGTCCAGGGTCTAGGGGAGTGATTGTAACAGGGATTGCTCCTCCAGAGTCTGAATATGATTTTTACAGTAGATTCTTCTGCCCTAAATATGGGATTGATGAGGATCCTGTTTGTGGGAGCGCACATTGTGCCTTAGCATCATACTGGTGCAAAAAACTGGGAAAGTCTGATGTTTTTGCATATGCGGCATCCCCTCGAGGCGGAGCAGTAAGCATGCATCTAGATGAGCAGAATCAAAGGGTGCTGCTGCGAGGGAAAGCTGTTACTGTCATGGAAGGAACTGTCTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PhzC-PhzF

Protein Analysis

301

Amino Acids

32.57

Weight (kDa)

5.23

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03210 AT1G03210 AT4G02860
fragaria_vesca	FvH4_2g23800 FvH4_2g23800 FvH4_2g23801
malus_domestica	MD03G1267500.v1.1 MD03G1267600.v1.1 MD11G1288200.v1.1 MD11G1288500.v1.1
prunus_persica	Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243200_v2.0.a1 Prupe.8G243300_v2.0.a1
pyrus_communis	pycom03g21380 pycom11g25580 pycom11g25600
rosa_chinensis	RchiOBHm_Chr6g0291351 RchiOBHm_Chr6g0291361 RchiOBHm_Chr6g0291371
rosa_laevigata	RLG00000012119 RLG00000012120 RLG00000012121 RLG00000012122
rosa_multiflora	Rmu_sc0003735.1_g000014 Rmu_sc0003735.1_g000018 Rmu_sc0003735.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176100 Rroxscaffold_7G00176110 Rroxscaffold_7G00176120
rosa_rugosa	Rorug06G0107300 Rorug06G0107400 Rorug06G0107500 Rorug06G0107600 Rorug06G0107600 Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh1BG217800 Rh1BG217900 Rh1DG244100 Rh1DG244200 Rh6AG330800 Rh6AG331000 Rh6AG331100 Rh6BG337900 Rh6BG338000 Rh6CG344200 Rh6CG344300 Rh6DG331200 Rh6DG331300
rosa_wichuraiana	Rw6G028730 Rw6G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	804
AciI	CCGC	5 cut(s)	74, 260, 438, 794, 810
AclWI	GGATC	3 cut(s)	595, 707, 720
AcsI	RAATTY	3 cut(s)	295, 427, 452
AcuI	CTGAAG	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	737
AfiI	CCNNNNNNNGG	5 cut(s)	73, 200, 698, 722, 809
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	6 cut(s)	58, 136, 378, 389, 422, 457
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	6 cut(s)	53, 191, 238, 341, 569, 869
AluI	AGCT	6 cut(s)	53, 191, 238, 341, 569, 869
Alw26I	GTCTC	2 cut(s)	140, 209
AlwI	GGATC	3 cut(s)	595, 707, 720
AlwNI	CAGNNNCTG	1 cut(s)	659
Ama87I	CYCGRG	2 cut(s)	162, 804
AoxI	GGCC	3 cut(s)	117, 123, 486
ApeKI	GCWGC	4 cut(s)	71, 263, 853, 856
ApoI	RAATTY	3 cut(s)	295, 427, 452
AspA2I	CCTAGG	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	731
AsuHPI	GGTGA	3 cut(s)	160, 407, 523
AvaI	CYCGRG	2 cut(s)	162, 804
AvrII	CCTAGG	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	527
BbvI	GCAGC	4 cut(s)	83, 250, 840, 843
BccI	CCATC	4 cut(s)	204, 451, 488, 565
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	2 cut(s)	140, 209
BfaI	CTAG	4 cut(s)	195, 462, 621, 830
BisI	GCNGC	7 cut(s)	72, 261, 264, 438, 795, 854, 857
BlnI	CCTAGG	1 cut(s)	194
BlsI	GCNGC	7 cut(s)	73, 262, 265, 439, 796, 855, 858
Bme1390I	CCNGG	1 cut(s)	615
BmeT110I	CYCGRG	2 cut(s)	162, 804
BmiI	GGNNCC	2 cut(s)	351, 714
BmrFI	CCNGG	1 cut(s)	615
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	5 cut(s)	25, 586, 755, 806, 835
BmuI	ACTGGG	1 cut(s)	776
BoxI	GACNNNNGTC	2 cut(s)	164, 527
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	742
BsaBI	GATNNNNATC	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	6 cut(s)	27, 120, 194, 483, 489, 614
BsaXI	ACNNNNNCTCC	4 cut(s)	175, 205, 618, 648
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 200, 698, 722, 809
Bse1I	ACTGG	4 cut(s)	14, 106, 758, 771
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	6 cut(s)	27, 120, 194, 483, 489, 614
BseGI	GGATG	3 cut(s)	40, 499, 797
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	5 cut(s)	73, 200, 698, 722, 809
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	4 cut(s)	14, 106, 758, 771
BseRI	GAGGAG	1 cut(s)	639
BseXI	GCAGC	4 cut(s)	83, 250, 840, 843
BseYI	CCCAGC	1 cut(s)	67
BshFI	GGCC	3 cut(s)	119, 125, 488
BsiHKCI	CYCGRG	2 cut(s)	162, 804
BslI	CCNNNNNNNGG	5 cut(s)	73, 200, 698, 722, 809
BsmAI	GTCTC	2 cut(s)	140, 209
BsnI	GGCC	3 cut(s)	119, 125, 488
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	2 cut(s)	162, 804
Bsp143I	GATC	4 cut(s)	477, 538, 600, 712
BspACI	CCGC	5 cut(s)	74, 260, 438, 794, 810
BspANI	GGCC	3 cut(s)	119, 125, 488
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	351, 714
BspPI	GGATC	3 cut(s)	595, 707, 720
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	4 cut(s)	14, 106, 758, 771
BssECI	CCNNGG	6 cut(s)	27, 120, 194, 483, 489, 614
BssMI	GATC	4 cut(s)	477, 538, 600, 712
BssT1I	CCWWGG	2 cut(s)	194, 489
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	3 cut(s)	677, 877, 892
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	117, 824
BstDEI	CTNAG	3 cut(s)	206, 742, 895
BstDSI	CCRYGG	2 cut(s)	27, 120
BstEII	GGTNACC	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	40, 499, 797
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	4 cut(s)	480, 541, 603, 715
BstMAI	GTCTC	2 cut(s)	140, 209
BstMBI	GATC	4 cut(s)	477, 538, 600, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 737, 794
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	2 cut(s)	530, 826
BstPAI	GACNNNNGTC	2 cut(s)	164, 527
BstPI	GGTNACC	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	613
BstV1I	GCAGC	4 cut(s)	83, 250, 840, 843
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuRI	GGCC	3 cut(s)	119, 125, 488
BtgI	CCRYGG	2 cut(s)	27, 120
BtsCI	GGATG	3 cut(s)	40, 499, 797
BtsIMutI	CAGTG	3 cut(s)	21, 42, 113
Cac8I	GCNNGC	2 cut(s)	117, 824
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	1 cut(s)	731
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	4 cut(s)	248, 527, 823, 880
DdeI	CTNAG	3 cut(s)	206, 742, 895
DpnI	GATC	4 cut(s)	479, 540, 602, 714
DpnII	GATC	4 cut(s)	477, 538, 600, 712
DraIII	CACNNNGTG	1 cut(s)	737
EciI	GGCGGA	1 cut(s)	825
Eco130I	CCWWGG	2 cut(s)	194, 489
Eco147I	AGGCCT	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	2 cut(s)	162, 804
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	194, 489
EcoT22I	ATGCAT	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	194, 489
FaeI	CATG	4 cut(s)	251, 530, 826, 883
FatI	CATG	4 cut(s)	247, 526, 822, 879
FauNDI	CATATG	1 cut(s)	790
Fnu4HI	GCNGC	7 cut(s)	72, 261, 264, 438, 795, 854, 857
FokI	GGATG	3 cut(s)	47, 506, 784
Fsp4HI	GCNGC	7 cut(s)	72, 261, 264, 438, 795, 854, 857
FspBI	CTAG	4 cut(s)	195, 462, 621, 830
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	7 cut(s)	72, 261, 264, 438, 795, 854, 857
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	119, 125, 488
HhaI	GCGC	1 cut(s)	731
Hin1II	CATG	4 cut(s)	251, 530, 826, 883
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HinfI	GANTC	7 cut(s)	47, 160, 173, 330, 656, 681, 841
HphI	GGTGA	3 cut(s)	160, 407, 523
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	7 cut(s)	130, 145, 159, 209, 484, 661, 778
Hpy188III	TCNNGA	4 cut(s)	327, 353, 653, 830
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	231, 878
HpyCH4III	ACNGT	3 cut(s)	677, 877, 892
HpyCH4V	TGCA	6 cut(s)	115, 251, 266, 759, 788, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 737, 794
HpyF3I	CTNAG	3 cut(s)	206, 742, 895
Hsp92II	CATG	4 cut(s)	251, 530, 826, 883
HspAI	GCGC	1 cut(s)	729
Kzo9I	GATC	4 cut(s)	477, 538, 600, 712
LmnI	GCTCC	4 cut(s)	196, 652, 726, 812
Lsp1109I	GCAGC	4 cut(s)	83, 250, 840, 843
LweI	GCATC	5 cut(s)	25, 586, 755, 806, 835
MaeI	CTAG	4 cut(s)	195, 462, 621, 830
MaeIII	GTNAC	4 cut(s)	166, 529, 634, 871
MalI	GATC	4 cut(s)	479, 540, 602, 714
MboI	GATC	4 cut(s)	477, 538, 600, 712
MboII	GAAGA	5 cut(s)	19, 101, 104, 532, 676
MflI	RGATCY	1 cut(s)	712
MluCI	AATT	3 cut(s)	295, 427, 452
MlyI	GAGTC	2 cut(s)	154, 665
MmeI	TCCRAC	2 cut(s)	249, 324
MnlI	CCTC	9 cut(s)	136, 223, 460, 478, 660, 703, 800, 813, 854
Mph1103I	ATGCAT	1 cut(s)	828
MseI	TTAA	2 cut(s)	279, 360
MslI	CAYNNNNRTG	2 cut(s)	754, 831
MspA1I	CMGCKG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	3 cut(s)	257, 737, 794
NdeI	CATATG	1 cut(s)	790
NdeII	GATC	4 cut(s)	477, 538, 600, 712
NlaIII	CATG	4 cut(s)	251, 530, 826, 883
NlaIV	GGNNCC	2 cut(s)	351, 714
NmuCI	GTSAC	2 cut(s)	166, 529
NsiI	ATGCAT	1 cut(s)	828
NspI	RCATGY	2 cut(s)	530, 826
PaeI	GCATGC	1 cut(s)	826
PaeR7I	CTCGAG	1 cut(s)	804
PceI	AGGCCT	1 cut(s)	488
PciI	ACATGT	1 cut(s)	526
PfeI	GAWTC	5 cut(s)	47, 173, 330, 681, 841
PkrI	GCNGC	7 cut(s)	73, 262, 265, 439, 796, 855, 858
PleI	GAGTC	2 cut(s)	154, 664
PpsI	GAGTC	2 cut(s)	154, 664
PscI	ACATGT	1 cut(s)	526
PshAI	GACNNNNGTC	2 cut(s)	164, 527
Psp6I	CCWGG	1 cut(s)	613
PspEI	GGTNACC	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	351, 714
PspXI	VCTCGAGB	1 cut(s)	804
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	712
RseI	CAYNNNNRTG	2 cut(s)	754, 831
SaqAI	TTAA	2 cut(s)	279, 360
SatI	GCNGC	7 cut(s)	72, 261, 264, 438, 795, 854, 857
Sau3AI	GATC	4 cut(s)	477, 538, 600, 712
SchI	GAGTC	2 cut(s)	154, 665
ScrFI	CCNGG	1 cut(s)	615
SfaNI	GCATC	5 cut(s)	25, 586, 755, 806, 835
Sfr274I	CTCGAG	1 cut(s)	804
SlaI	CTCGAG	1 cut(s)	804
SmiMI	CAYNNNNRTG	2 cut(s)	754, 831
SmlI	CTYRAG	1 cut(s)	804
SmoI	CTYRAG	1 cut(s)	804
SphI	GCATGC	1 cut(s)	826
Sse9I	AATT	3 cut(s)	295, 427, 452
SseBI	AGGCCT	1 cut(s)	488
SsiI	CCGC	5 cut(s)	74, 260, 438, 794, 810
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	4 cut(s)	195, 462, 621, 830
StuI	AGGCCT	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	2 cut(s)	194, 489
TaaI	ACNGT	3 cut(s)	677, 877, 892
TaqI	TCGA	1 cut(s)	805
TasI	AATT	3 cut(s)	295, 427, 452
TauI	GCSGC	3 cut(s)	263, 440, 797
TfiI	GAWTC	5 cut(s)	47, 173, 330, 681, 841
Tru1I	TTAA	2 cut(s)	279, 360
Tru9I	TTAA	2 cut(s)	279, 360
TscAI	CASTG	3 cut(s)	21, 49, 113
TseFI	GTSAC	2 cut(s)	166, 529
TseI	GCWGC	4 cut(s)	71, 263, 853, 856
Tsp45I	GTSAC	2 cut(s)	166, 529
TspDTI	ATGAA	3 cut(s)	406, 462, 465
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	3 cut(s)	21, 49, 113
XapI	RAATTY	3 cut(s)	295, 427, 452
XbaI	TCTAGA	1 cut(s)	829
XceI	RCATGY	2 cut(s)	530, 826
XhoI	CTCGAG	1 cut(s)	804
XmaJI	CCTAGG	1 cut(s)	194
XspI	CTAG	4 cut(s)	195, 462, 621, 830
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.