RLG00000012121

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001362
Physical Location & Seq
Forward (+)
15458314 .. 15459674
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012121

Sequence Viewer

Length: 780 bp
ATGGTTGCGAGCTCTAGCCTCCGAGTTCCATCTCCCATCAAGTGTTACTTGACTCGTATCACTGACATTACTAATGCAGCTAGCTGCAGGTTTCGTCTCAGATGGTTTTCACCTGTCAATAAGTTTATCCTTAACAGCCTAAGCTTTGTGGTCATGCTACATTTAGCGGCTGCACACACCCTCTTTAAGTCTGGCTTGATCAATTCCAACATCATTGAGTTTTCGACCTTGTCTGGAATTCTGAGAGCTAAAAAGGTTATAGATCATGTTAAGCCAGCCAATGACTCCTATTTTATTGAGCTGAATTTGCCTGCTGACCCATCTTCTGAATTCATTTCTATTGATGCTTCATTAATCTCCGAGGCCCTGGGCGGTGCTTCTGCCATTGATTTAAGGAGGACAATCATCATGGATAATCTACTTGTTGTGCTTCCAACAGGAAACAGTGTTGCAGATTTACAGCCAAATTTCGATGCTATCGGAAAATGTCCAGGCTCGATGGGAGTGATTGTAACAGGGACTGCTCCTCCTGAATCTGGATATGATTTTTACAGCAGATTCTTCTGCCCAAAATTTGGGGTCAATGAGGATCATGTTTGTGGGAGTGCACACTGTGCCTTAGCGACATATTGGTGCAAAATGCAGGGGAAGAGTGATTTCGTCGCATATCAAGCATCTCCGGGAGGGGGGATACTAAACATTCATCTAGATAAGCAGAACCAACGGGTACTGCTGCAAGGAAAAGCTGTTACTGTCATGGAAGGAACTGTTTTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

260

Amino Acids

28.03

Weight (kDa)

8.15

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 15 - 255 4.7e-42 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 575
AciI CCGC 2 cut(s) 167, 372
AclWI GGATC 1 cut(s) 597
AcsI RAATTY 5 cut(s) 237, 304, 329, 466, 572
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 1 cut(s) 729
AfiI CCNNNNNNNGG 3 cut(s) 536, 575, 686
AjnI CCWGG 2 cut(s) 366, 490
AluBI AGCT 7 cut(s) 12, 80, 84, 144, 248, 301, 746
AluI AGCT 7 cut(s) 12, 80, 84, 144, 248, 301, 746
Alw21I GWGCWC 2 cut(s) 14, 610
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 606
AlwI GGATC 1 cut(s) 597
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 1 cut(s) 363
ApaLI GTGCAC 1 cut(s) 606
ApeKI GCWGC 4 cut(s) 77, 84, 170, 733
ApoI RAATTY 5 cut(s) 237, 304, 329, 466, 572
AseI ATTAAT 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 364
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 1 cut(s) 102
AsuNHI GCTAGC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 14, 610
BbvI GCAGC 4 cut(s) 71, 89, 157, 720
BccI CCATC 5 cut(s) 37, 44, 96, 328, 493
BciT130I CCWGG 2 cut(s) 368, 492
BciVI GTATCC 1 cut(s) 684
BclI TGATCA 1 cut(s) 198
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 3 cut(s) 15, 81, 707
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 78
BfuI GTATCC 1 cut(s) 684
BisI GCNGC 5 cut(s) 78, 85, 168, 171, 734
BlsI GCNGC 5 cut(s) 79, 86, 169, 172, 735
Bme1390I CCNGG 3 cut(s) 368, 492, 681
BmgT120I GGNCC 1 cut(s) 364
BmrFI CCNGG 3 cut(s) 368, 492, 681
BmsI GCATC 3 cut(s) 334, 463, 683
BmtI GCTAGC 1 cut(s) 84
Bpu10I CCTNAGC 2 cut(s) 140, 619
BpuMI CCSGG 1 cut(s) 681
BsaJI CCNNGG 3 cut(s) 360, 366, 367
BsaXI ACNNNNNCTCC 4 cut(s) 495, 511, 525, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 536, 575, 686
BseBI CCWGG 2 cut(s) 368, 492
BseDI CCNNGG 3 cut(s) 360, 366, 367
BseLI CCNNNNNNNGG 3 cut(s) 536, 575, 686
BseMII CTCAG 2 cut(s) 112, 233
BseRI GAGGAG 1 cut(s) 516
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 4 cut(s) 71, 89, 157, 720
BsgI GTGCAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 365
BsiHKAI GWGCWC 2 cut(s) 14, 610
BsiSI CCGG 1 cut(s) 680
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 3 cut(s) 536, 575, 686
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 532
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 14, 610
Bsp143I GATC 3 cut(s) 198, 262, 589
BspACI CCGC 2 cut(s) 167, 372
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 2 cut(s) 111, 234
BspMAI CTGCAG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 78
BspOI GCTAGC 1 cut(s) 84
BspPI GGATC 1 cut(s) 597
BssECI CCNNGG 3 cut(s) 360, 366, 367
BssMI GATC 3 cut(s) 198, 262, 589
Bst2UI CCWGG 2 cut(s) 368, 492
Bst4CI ACNGT 4 cut(s) 446, 614, 754, 769
Bst6I CTCTTC 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 614
BstC8I GCNNGC 4 cut(s) 10, 82, 276, 312
BstDEI CTNAG 4 cut(s) 98, 140, 242, 619
BstKTI GATC 3 cut(s) 201, 265, 592
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 198, 262, 589
BstMWI GCNNNNNNNGC 3 cut(s) 307, 614, 671
BstNI CCWGG 2 cut(s) 368, 492
BstSCI CCNGG 3 cut(s) 366, 490, 679
BstSFI CTRYAG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 610
BstV1I GCAGC 4 cut(s) 71, 89, 157, 720
BsuI GTATCC 1 cut(s) 684
BsuRI GGCC 1 cut(s) 365
BtsIMutI CAGTG 3 cut(s) 60, 451, 610
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 4 cut(s) 10, 82, 276, 312
CaiI CAGNNNCTG 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 728
CviAII CATG 5 cut(s) 154, 266, 409, 593, 757
CviQI GTAC 1 cut(s) 728
DdeI CTNAG 4 cut(s) 98, 140, 242, 619
DpnI GATC 3 cut(s) 200, 264, 591
DpnII GATC 3 cut(s) 198, 262, 589
DraIII CACNNNGTG 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Ecl136II GAGCTC 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 364
EcoRI GAATTC 2 cut(s) 237, 329
EcoRII CCWGG 2 cut(s) 366, 490
EcoT38I GRGCYC 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 5 cut(s) 157, 269, 412, 596, 760
FaiI YATR 9 cut(s) 155, 260, 267, 410, 543, 594, 628, 667, 758
FalI AAGNNNNNCTT 4 cut(s) 32, 64, 179, 211
FaqI GGGAC 1 cut(s) 532
FatI CATG 5 cut(s) 153, 265, 408, 592, 756
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 78, 85, 168, 171, 734
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 5 cut(s) 78, 85, 168, 171, 734
FspBI CTAG 3 cut(s) 15, 81, 707
GluI GCNGC 5 cut(s) 78, 85, 168, 171, 734
HaeIII GGCC 1 cut(s) 365
HapII CCGG 1 cut(s) 680
Hin1II CATG 5 cut(s) 157, 269, 412, 596, 760
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 4 cut(s) 52, 284, 533, 558
HpaII CCGG 1 cut(s) 680
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 608
Hpy188I TCNGA 6 cut(s) 23, 101, 243, 328, 361, 482
Hpy188III TCNNGA 4 cut(s) 234, 530, 537, 707
Hpy8I GTNNAC 1 cut(s) 608
Hpy99I CGWCG 1 cut(s) 665
HpyAV CCTTC 1 cut(s) 755
HpyCH4III ACNGT 4 cut(s) 446, 614, 754, 769
HpyCH4V TGCA 8 cut(s) 77, 87, 173, 452, 608, 636, 643, 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 614, 671
HpyF3I CTNAG 4 cut(s) 98, 140, 242, 619
Hsp92II CATG 5 cut(s) 157, 269, 412, 596, 760
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 3 cut(s) 198, 262, 589
LmnI GCTCC 1 cut(s) 529
Lsp1109I GCAGC 4 cut(s) 71, 89, 157, 720
LweI GCATC 3 cut(s) 334, 463, 683
MaeI CTAG 3 cut(s) 15, 81, 707
MaeIII GTNAC 3 cut(s) 44, 511, 748
MalI GATC 3 cut(s) 200, 264, 591
MboI GATC 3 cut(s) 198, 262, 589
MboII GAAGA 3 cut(s) 315, 553, 661
MhlI GDGCHC 2 cut(s) 14, 610
MluCI AATT 6 cut(s) 202, 237, 304, 329, 466, 572
MlyI GAGTC 2 cut(s) 46, 278
MmeI TCCRAC 2 cut(s) 231, 458
MnlI CCTC 7 cut(s) 29, 191, 355, 390, 537, 580, 677
MseI TTAA 6 cut(s) 132, 186, 270, 353, 392, 778
MslI CAYNNNNRTG 2 cut(s) 597, 631
MspI CCGG 1 cut(s) 680
MspR9I CCNGG 3 cut(s) 368, 492, 681
MvaI CCWGG 2 cut(s) 368, 492
MwoI GCNNNNNNNGC 3 cut(s) 307, 614, 671
NciI CCSGG 1 cut(s) 681
NdeII GATC 3 cut(s) 198, 262, 589
NheI GCTAGC 1 cut(s) 80
NlaIII CATG 5 cut(s) 157, 269, 412, 596, 760
PasI CCCWGGG 1 cut(s) 367
PfeI GAWTC 2 cut(s) 533, 558
PflFI GACNNNGTC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 575
PfoI TCCNGGA 1 cut(s) 679
PkrI GCNGC 5 cut(s) 79, 86, 169, 172, 735
PleI GAGTC 2 cut(s) 46, 278
PpsI GAGTC 2 cut(s) 46, 278
PshBI ATTAAT 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 366, 490
PspGI CCWGG 2 cut(s) 366, 490
PspPI GGNCC 1 cut(s) 364
PstI CTGCAG 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 521
PsyI GACNNNGTC 1 cut(s) 229
RsaI GTAC 1 cut(s) 729
RsaNI GTAC 1 cut(s) 728
RseI CAYNNNNRTG 2 cut(s) 597, 631
SacI GAGCTC 1 cut(s) 14
SaqAI TTAA 6 cut(s) 132, 186, 270, 353, 392, 778
SatI GCNGC 5 cut(s) 78, 85, 168, 171, 734
Sau3AI GATC 3 cut(s) 198, 262, 589
Sau96I GGNCC 1 cut(s) 364
SchI GAGTC 2 cut(s) 46, 278
ScrFI CCNGG 3 cut(s) 368, 492, 681
SduI GDGCHC 2 cut(s) 14, 610
SfaNI GCATC 3 cut(s) 334, 463, 683
SfcI CTRYAG 1 cut(s) 85
SmiMI CAYNNNNRTG 2 cut(s) 597, 631
Sse9I AATT 6 cut(s) 202, 237, 304, 329, 466, 572
SsiI CCGC 2 cut(s) 167, 372
SspMI CTAG 3 cut(s) 15, 81, 707
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 3 cut(s) 366, 490, 679
TaaI ACNGT 4 cut(s) 446, 614, 754, 769
TaqI TCGA 3 cut(s) 224, 471, 497
TasI AATT 6 cut(s) 202, 237, 304, 329, 466, 572
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 533, 558
Tru1I TTAA 6 cut(s) 132, 186, 270, 353, 392, 778
Tru9I TTAA 6 cut(s) 132, 186, 270, 353, 392, 778
TscAI CASTG 3 cut(s) 67, 451, 617
TseI GCWGC 4 cut(s) 77, 84, 170, 733
TspDTI ATGAA 3 cut(s) 322, 339, 692
TspRI CASTG 3 cut(s) 67, 451, 617
Tth111I GACNNNGTC 1 cut(s) 229
Van91I CCANNNNNTGG 1 cut(s) 575
VneI GTGCAC 1 cut(s) 606
VspI ATTAAT 1 cut(s) 353
XapI RAATTY 5 cut(s) 237, 304, 329, 466, 572
XbaI TCTAGA 1 cut(s) 706
XspI CTAG 3 cut(s) 15, 81, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.