Rh1BG217900

R3H-associated N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001362
Physical Location & Seq
Forward (+)
33767711 .. 33768689
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG217900.1

Sequence Viewer

Length: 534 bp
ATGCTGAGAGGAAATCTCTCTAACAGTGAAACACAAGACTCCTACTTTATTGAATTGAATTTTCCAGCTGATCCATCAAATGAATTCAATTCTGCTGATGCTTCGTTAATATCCAATGCCTTGGATGGTGCTTCAGTCATTGATATAAGGAGGACAACTGTCACAGATGATTTGCTTGTTCTGCTTCCATCAGGAAAAGCTGTTGTAGATTTACAGCCACAGTATGATGAAATCAAAAAGTGTCCAGGAACAAGGGGAGTAATTGTTACAGCGGTTGCTCCTCCAGAGTCTGGATATGATTTTTACAGTAGATTCTTCTGTCCTACAAACGGCATCGGTGAGGATCCTGTTTGTGGGAGTGCACATTGCGCCTTAGCATCATACTGGTGCAACAAGCTGGGAAAGTGTGATCTTGTTGCATATGCGGCATCACCTAGAGGGGGAACAATAAACATTCATCTGGATGAGCAGAATCAAAGGGTGCTCCTGCGAGGGAAAGCCGTGACTGTGATGGAAGGAACTGTTTTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

177

Amino Acids

19.05

Weight (kDa)

4.72

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 6 - 173 9.9e-39 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 290
AciI CCGC 2 cut(s) 272, 425
AclWI GGATC 3 cut(s) 65, 338, 351
AcsI RAATTY 2 cut(s) 58, 83
AcuI CTGAAG 1 cut(s) 117
AfiI CCNNNNNNNGG 4 cut(s) 290, 329, 353, 440
AgsI TTSAA 3 cut(s) 53, 58, 88
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 3 cut(s) 68, 200, 397
AluI AGCT 3 cut(s) 68, 200, 397
Alw21I GWGCWC 2 cut(s) 364, 486
Alw44I GTGCAC 1 cut(s) 360
AlwI GGATC 3 cut(s) 65, 338, 351
AlwNI CAGNNNCTG 1 cut(s) 290
ApaLI GTGCAC 1 cut(s) 360
ApoI RAATTY 2 cut(s) 58, 83
AspLEI GCGC 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 350, 423
BaeGI GKGCMC 1 cut(s) 364
BamHI GGATCC 1 cut(s) 343
Bbv12I GWGCWC 2 cut(s) 364, 486
BccI CCATC 4 cut(s) 82, 119, 196, 505
BceAI ACGGC 2 cut(s) 346, 485
BciT130I CCWGG 1 cut(s) 246
BfaI CTAG 1 cut(s) 435
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 4 cut(s) 88, 342, 386, 437
BoxI GACNNNNGTC 1 cut(s) 158
BplI GAGNNNNNCTC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 373
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 329, 353, 440
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 130, 469
BseLI CCNNNNNNNGG 4 cut(s) 290, 329, 353, 440
BseMI GCAATG 1 cut(s) 364
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 364
BseYI CCCAGC 1 cut(s) 397
BsiHKAI GWGCWC 2 cut(s) 364, 486
BslI CCNNNNNNNGG 4 cut(s) 290, 329, 353, 440
Bsp1286I GDGCHC 2 cut(s) 364, 486
Bsp143I GATC 3 cut(s) 70, 343, 409
BspACI CCGC 2 cut(s) 272, 425
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 3 cut(s) 65, 338, 351
BsrDI GCAATG 1 cut(s) 364
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 3 cut(s) 70, 343, 409
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 6 cut(s) 26, 160, 222, 308, 508, 523
BstDEI CTNAG 2 cut(s) 5, 373
BstF5I GGATG 2 cut(s) 130, 469
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 3 cut(s) 73, 346, 412
BstMBI GATC 3 cut(s) 70, 343, 409
BstMWI GCNNNNNNNGC 3 cut(s) 181, 368, 425
BstNI CCWGG 1 cut(s) 246
BstPAI GACNNNNGTC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 343
BtsCI GGATG 2 cut(s) 130, 469
BtsIMutI CAGTG 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 290
CfoI GCGC 1 cut(s) 371
CviJI RGCY 5 cut(s) 68, 200, 217, 397, 500
CviKI_1 RGCY 5 cut(s) 68, 200, 217, 397, 500
DdeI CTNAG 2 cut(s) 5, 373
DpnI GATC 3 cut(s) 72, 345, 411
DpnII GATC 3 cut(s) 70, 343, 409
Eco130I CCWWGG 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaiI YATR 6 cut(s) 146, 225, 297, 382, 421, 423
FauNDI CATATG 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 2 cut(s) 137, 476
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 370
GluI GCNGC 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 267
HhaI GCGC 1 cut(s) 371
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HinfI GANTC 4 cut(s) 38, 287, 312, 472
HphI GGTGA 2 cut(s) 350, 423
Hpy166II GTNNAC 1 cut(s) 362
Hpy188III TCNNGA 4 cut(s) 192, 284, 291, 461
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 509
HpyCH4III ACNGT 6 cut(s) 26, 160, 222, 308, 508, 523
HpyCH4V TGCA 3 cut(s) 362, 390, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 368, 425
HpyF3I CTNAG 2 cut(s) 5, 373
HspAI GCGC 1 cut(s) 369
Kzo9I GATC 3 cut(s) 70, 343, 409
LmnI GCTCC 2 cut(s) 283, 489
LweI GCATC 4 cut(s) 88, 342, 386, 437
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 3 cut(s) 160, 265, 502
MalI GATC 3 cut(s) 72, 345, 411
MboI GATC 3 cut(s) 70, 343, 409
MboII GAAGA 1 cut(s) 307
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 364, 486
MluCI AATT 5 cut(s) 53, 58, 83, 88, 261
MlyI GAGTC 2 cut(s) 32, 296
MnlI CCTC 5 cut(s) 144, 291, 334, 431, 485
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 2 cut(s) 385, 462
MspA1I CMGCKG 2 cut(s) 68, 272
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 181, 368, 425
NdeI CATATG 1 cut(s) 421
NdeII GATC 3 cut(s) 70, 343, 409
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 2 cut(s) 160, 502
PfeI GAWTC 2 cut(s) 312, 472
PflMI CCANNNNNTGG 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 2 cut(s) 32, 295
PpsI GAGTC 2 cut(s) 32, 295
PshAI GACNNNNGTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 68
RseI CAYNNNNRTG 2 cut(s) 385, 462
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 3 cut(s) 70, 343, 409
SchI GAGTC 2 cut(s) 32, 296
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 2 cut(s) 364, 486
SetI ASST 4 cut(s) 70, 202, 399, 436
SfaNI GCATC 4 cut(s) 88, 342, 386, 437
SmiMI CAYNNNNRTG 2 cut(s) 385, 462
Sse9I AATT 5 cut(s) 53, 58, 83, 88, 261
SsiI CCGC 2 cut(s) 272, 425
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 6 cut(s) 26, 160, 222, 308, 508, 523
TasI AATT 5 cut(s) 53, 58, 83, 88, 261
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 2 cut(s) 312, 472
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 160, 502
Tsp45I GTSAC 2 cut(s) 160, 502
TspDTI ATGAA 3 cut(s) 96, 243, 446
TspRI CASTG 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 290
VneI GTGCAC 1 cut(s) 360
XapI RAATTY 2 cut(s) 58, 83
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.