RLG00000012120

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001362
Physical Location & Seq
Forward (+)
15444008 .. 15450616
6609 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012120

Sequence Viewer

Length: 1236 bp
ATGGCAAAGAAACCGGTGAAATACTCTGTGGTGGATGCTTTCACCGACTCAGCTTTCAAGGGGAATCCAGCAGCAGTTTGCTTGCTAGAGGAAGACAGAGACGATCAATGGATGCAAGCTCTGGCTGCGGAGTTCAATCTCTCCGAGACATGTTACTTGACTCTCCTCAATGGCTCGGACCACTCGCCTTCTTTGACTTCCACACCAAGGTTCAAACTCAGATGGTTCACTCCTGTTGCTGAGGTTGAGCTTTGTGGTCATGCAACATTAGCGGCTGCTTATACCCTGTTTATGTCTGGTTTGATTGATTCCGACGTTGTTGAGTTTTCGACCTTGTCTGGAATTCTAACAGCTAAAAAGGTTGTAGATCATGTTAAGGCAGCTAACGGTTCACATTTAAAAAATGGTGAAGCACAAGATAACTATTTTATTGAACTGAATTTTCCTGCTGACCCATCTTCTGAATTCAATTCTGCTGAGGTTTCGTTTATTTCGAACGCCTTGGGGGGTGCTTCTGTGGTTGAAATAATGAGGACAGTTGCAGATAATCTCCTTGTGGTGCTTCCATCTGGAAAGACTGTTGCAGATTTGTTGCCACAGTTAGATGCAATTGAAAAATGTCCAGGTACTGGAGTGATTGTAACAGGAGTTGCTCCTCCAGAGTCTGGATTTGATTTTATCAGTAGAGTCTTCTTCCCGAAATTCGGGATCAATGAGGATCCTGTTTGTGGGAGTGCACATTGTGGCTTGGCACCATACTGGTGCAAGAAACTGGGAAAGGGTGATGTTGTTGCATATCAGGCATCACCTAGAGGGGGAACACTATACATTCATCTGGATGAGAAAAATCAAAGGGTGCTACTCCGAGGGAAGGCAGTTACTGTGATGGAAGGAACTTTCGATTACCAAGACTCGGATGATATACTTCATTGTTACAAAAAGAACATTGGTCTAGACAAGAACAGTGTTGACGACCATAGCTTCCAAAACAGAGCCGACCCAGAAGCTTCCAAACCAGAGCCGACCCAGACGAGCAGAAAGCCACCATCTTTGCTGCAGAACCAGAGAAAGAGGCGAGATGAAAGAAAGGGAGAAGGGAACGGGGAAGAAGGAAGAGAAGGAGAAGAGACAGACCGGAAGCTCTTGACTAGAACAACACAAGTGGAAGGTTCTGATCTGATCTCTGACCAATCCTGTGGCAAATCTTTTAAGGAGCAGGAATTTGCTGCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

412

Amino Acids

44.9

Weight (kDa)

5.06

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 11 - 298 2.5e-85 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 751
AccB7I CCANNNNNTGG 2 cut(s) 629, 665
AciI CCGC 2 cut(s) 128, 272
AclWI GGATC 3 cut(s) 713, 716, 726
AcsI RAATTY 5 cut(s) 342, 439, 464, 701, 1220
AdeI CACNNNGTG 1 cut(s) 743
AfaI GTAC 1 cut(s) 628
AfiI CCNNNNNNNGG 8 cut(s) 207, 629, 665, 704, 728, 815, 871, 913
AflIII ACRYGT 1 cut(s) 149
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 7 cut(s) 58, 136, 214, 434, 469, 524, 614
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 8 cut(s) 53, 119, 250, 353, 383, 981, 1007, 1141
AluI AGCT 8 cut(s) 53, 119, 250, 353, 383, 981, 1007, 1141
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 3 cut(s) 93, 140, 1121
Alw44I GTGCAC 1 cut(s) 735
AlwI GGATC 3 cut(s) 713, 716, 726
AlwNI CAGNNNCTG 3 cut(s) 629, 665, 881
ApaLI GTGCAC 1 cut(s) 735
ApeKI GCWGC 6 cut(s) 71, 125, 275, 380, 1054, 1226
ApoI RAATTY 5 cut(s) 342, 439, 464, 701, 1220
AsiGI ACCGGT 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 5 cut(s) 28, 34, 419, 794, 798
AsuII TTCGAA 1 cut(s) 494
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 739
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BamHI GGATCC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 751
BbsI GAAGAC 2 cut(s) 99, 682
Bbv12I GWGCWC 1 cut(s) 739
BbvCI CCTCAGC 2 cut(s) 240, 477
BbvI GCAGC 6 cut(s) 83, 112, 262, 392, 1041, 1213
BccI CCATC 5 cut(s) 216, 463, 574, 880, 1054
BciT130I CCWGG 1 cut(s) 624
BcoDI GTCTC 3 cut(s) 93, 140, 1121
BfaI CTAG 4 cut(s) 86, 810, 953, 1149
BfmI CTRYAG 1 cut(s) 1055
BisI GCNGC 7 cut(s) 72, 126, 273, 276, 381, 1055, 1227
BlsI GCNGC 7 cut(s) 73, 127, 274, 277, 382, 1056, 1228
Bme1390I CCNGG 1 cut(s) 624
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 720, 753
BmrFI CCNGG 1 cut(s) 624
BmrI ACTGGG 1 cut(s) 782
BmsI GCATC 4 cut(s) 25, 102, 595, 812
BmuI ACTGGG 1 cut(s) 782
BpiI GAAGAC 2 cut(s) 99, 682
BpmI CTGGAG 2 cut(s) 642, 651
Bpu10I CCTNAGC 2 cut(s) 240, 477
Bpu14I TTCGAA 1 cut(s) 494
BsaJI CCNNGG 3 cut(s) 206, 501, 865
BsaWI WCCGGW 2 cut(s) 13, 1134
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 8 cut(s) 207, 629, 665, 704, 728, 815, 871, 913
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 3 cut(s) 634, 764, 777
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 3 cut(s) 206, 501, 865
BseGI GGATG 4 cut(s) 40, 117, 844, 922
BseLI CCNNNNNNNGG 8 cut(s) 207, 629, 665, 704, 728, 815, 871, 913
BseMII CTCAG 5 cut(s) 63, 231, 232, 468, 1221
BseNI ACTGG 3 cut(s) 634, 764, 777
BseRI GAGGAG 2 cut(s) 155, 645
BseSI GKGCMC 1 cut(s) 739
BseXI GCAGC 6 cut(s) 83, 112, 262, 392, 1041, 1213
BshNI GGYRCC 1 cut(s) 751
BshTI ACCGGT 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 739
BsiSI CCGG 2 cut(s) 14, 1135
BslI CCNNNNNNNGG 8 cut(s) 207, 629, 665, 704, 728, 815, 871, 913
BsmAI GTCTC 3 cut(s) 93, 140, 1121
BsmBI CGTCTC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 739
Bsp143I GATC 6 cut(s) 103, 367, 708, 718, 1174, 1179
BspACI CCGC 2 cut(s) 128, 272
BspCNI CTCAG 5 cut(s) 62, 231, 232, 469, 1222
BspLI GGNNCC 2 cut(s) 720, 753
BspMAI CTGCAG 1 cut(s) 1059
BspPI GGATC 3 cut(s) 713, 716, 726
BspT104I TTCGAA 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 751
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 3 cut(s) 634, 764, 777
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 3 cut(s) 206, 501, 865
BssMI GATC 6 cut(s) 103, 367, 708, 718, 1174, 1179
BssT1I CCWWGG 2 cut(s) 206, 501
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 6 cut(s) 389, 538, 580, 600, 883, 965
Bst6I CTCTTC 2 cut(s) 1108, 1119
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 83, 117
BstDEI CTNAG 5 cut(s) 49, 218, 240, 477, 1230
BstF5I GGATG 4 cut(s) 40, 117, 844, 922
BstKTI GATC 6 cut(s) 106, 370, 711, 721, 1177, 1182
BstMAI GTCTC 3 cut(s) 93, 140, 1121
BstMBI GATC 6 cut(s) 103, 367, 708, 718, 1174, 1179
BstMWI GCNNNNNNNGC 3 cut(s) 125, 269, 800
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 622
BstSFI CTRYAG 1 cut(s) 1055
BstSLI GKGCMC 1 cut(s) 739
BstV1I GCAGC 6 cut(s) 83, 112, 262, 392, 1041, 1213
BstV2I GAAGAC 2 cut(s) 99, 682
BstX2I RGATCY 1 cut(s) 718
BstXI CCANNNNNNTGG 1 cut(s) 1196
BstYI RGATCY 1 cut(s) 718
BtsCI GGATG 4 cut(s) 40, 117, 844, 922
BtsIMutI CAGTG 1 cut(s) 970
Cac8I GCNNGC 2 cut(s) 83, 117
CaiI CAGNNNCTG 3 cut(s) 629, 665, 881
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 627
CspAI ACCGGT 1 cut(s) 13
CspCI CAANNNNNGTGG 4 cut(s) 1032, 1067, 1143, 1178
CviAII CATG 3 cut(s) 150, 260, 371
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 5 cut(s) 49, 218, 240, 477, 1230
DpnI GATC 6 cut(s) 105, 369, 710, 720, 1176, 1181
DpnII GATC 6 cut(s) 103, 367, 708, 718, 1174, 1179
DraI TTTAAA 1 cut(s) 399
DraIII CACNNNGTG 1 cut(s) 743
Eam1104I CTCTTC 2 cut(s) 1108, 1119
EarI CTCTTC 2 cut(s) 1108, 1119
Eco130I CCWWGG 2 cut(s) 206, 501
Eco47I GGWCC 1 cut(s) 178
EcoRI GAATTC 2 cut(s) 342, 464
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 206, 501
ErhI CCWWGG 2 cut(s) 206, 501
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 3 cut(s) 153, 263, 374
FatI CATG 3 cut(s) 149, 259, 370
Fnu4HI GCNGC 7 cut(s) 72, 126, 273, 276, 381, 1055, 1227
FokI GGATG 4 cut(s) 47, 124, 851, 929
Fsp4HI GCNGC 7 cut(s) 72, 126, 273, 276, 381, 1055, 1227
FspBI CTAG 4 cut(s) 86, 810, 953, 1149
GluI GCNGC 7 cut(s) 72, 126, 273, 276, 381, 1055, 1227
GsuI CTGGAG 2 cut(s) 642, 651
HapII CCGG 2 cut(s) 14, 1135
Hin1II CATG 3 cut(s) 153, 263, 374
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HindIII AAGCTT 1 cut(s) 1005
HinfI GANTC 7 cut(s) 47, 64, 160, 308, 662, 687, 911
HpaII CCGG 2 cut(s) 14, 1135
HphI GGTGA 5 cut(s) 28, 34, 419, 794, 798
Hpy166II GTNNAC 4 cut(s) 228, 392, 737, 970
Hpy188III TCNNGA 9 cut(s) 339, 570, 659, 666, 697, 706, 836, 953, 1144
Hpy8I GTNNAC 4 cut(s) 228, 392, 737, 970
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 7 cut(s) 198, 865, 884, 1088, 1103, 1112, 1160
HpyCH4III ACNGT 6 cut(s) 389, 538, 580, 600, 883, 965
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 9 cut(s) 115, 263, 542, 584, 608, 737, 765, 794, 1057
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 269, 800
HpyF3I CTNAG 5 cut(s) 49, 218, 240, 477, 1230
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 3 cut(s) 153, 263, 374
Kzo9I GATC 6 cut(s) 103, 367, 708, 718, 1174, 1179
LmnI GCTCC 2 cut(s) 658, 1213
Lsp1109I GCAGC 6 cut(s) 83, 112, 262, 392, 1041, 1213
LweI GCATC 4 cut(s) 25, 102, 595, 812
MaeI CTAG 4 cut(s) 86, 810, 953, 1149
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 4 cut(s) 152, 640, 877, 932
MalI GATC 6 cut(s) 105, 369, 710, 720, 1176, 1181
MboI GATC 6 cut(s) 103, 367, 708, 718, 1174, 1179
MboII GAAGA 7 cut(s) 104, 450, 682, 685, 1118, 1125, 1136
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 7 cut(s) 342, 439, 464, 469, 609, 701, 1220
MlyI GAGTC 5 cut(s) 41, 154, 671, 696, 905
MmeI TCCRAC 1 cut(s) 336
MseI TTAA 3 cut(s) 375, 398, 1209
MslI CAYNNNNRTG 2 cut(s) 760, 837
MspI CCGG 2 cut(s) 14, 1135
MspR9I CCNGG 1 cut(s) 624
MunI CAATTG 1 cut(s) 609
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 3 cut(s) 125, 269, 800
NdeII GATC 6 cut(s) 103, 367, 708, 718, 1174, 1179
NlaIII CATG 3 cut(s) 153, 263, 374
NlaIV GGNNCC 2 cut(s) 720, 753
NspI RCATGY 1 cut(s) 153
NspV TTCGAA 1 cut(s) 494
PciI ACATGT 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PfeI GAWTC 2 cut(s) 64, 308
PflFI GACNNNGTC 1 cut(s) 334
PflMI CCANNNNNTGG 2 cut(s) 629, 665
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 7 cut(s) 73, 127, 274, 277, 382, 1056, 1228
PleI GAGTC 5 cut(s) 41, 154, 670, 695, 905
PpsI GAGTC 5 cut(s) 41, 154, 670, 695, 905
PscI ACATGT 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 2 cut(s) 720, 753
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 1059
PstNI CAGNNNCTG 3 cut(s) 629, 665, 881
PsuI RGATCY 1 cut(s) 718
PsyI GACNNNGTC 1 cut(s) 334
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
RseI CAYNNNNRTG 2 cut(s) 760, 837
SaqAI TTAA 3 cut(s) 375, 398, 1209
SatI GCNGC 7 cut(s) 72, 126, 273, 276, 381, 1055, 1227
Sau3AI GATC 6 cut(s) 103, 367, 708, 718, 1174, 1179
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 5 cut(s) 41, 154, 671, 696, 905
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 4 cut(s) 25, 102, 595, 812
SfcI CTRYAG 1 cut(s) 1055
SfuI TTCGAA 1 cut(s) 494
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 760, 837
Sse9I AATT 7 cut(s) 342, 439, 464, 469, 609, 701, 1220
SsiI CCGC 2 cut(s) 128, 272
SspMI CTAG 4 cut(s) 86, 810, 953, 1149
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 2 cut(s) 206, 501
TaaI ACNGT 6 cut(s) 389, 538, 580, 600, 883, 965
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 329, 494, 900
TasI AATT 7 cut(s) 342, 439, 464, 469, 609, 701, 1220
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 2 cut(s) 64, 308
Tru1I TTAA 3 cut(s) 375, 398, 1209
Tru9I TTAA 3 cut(s) 375, 398, 1209
TscAI CASTG 1 cut(s) 970
TseI GCWGC 6 cut(s) 71, 125, 275, 380, 1054, 1226
TspDTI ATGAA 3 cut(s) 821, 917, 1095
TspRI CASTG 1 cut(s) 970
Tth111I GACNNNGTC 1 cut(s) 334
Van91I CCANNNNNTGG 2 cut(s) 629, 665
VneI GTGCAC 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 5 cut(s) 342, 439, 464, 701, 1220
XbaI TCTAGA 1 cut(s) 952
XceI RCATGY 1 cut(s) 153
XspI CTAG 4 cut(s) 86, 810, 953, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.