Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Forward (+)

53266384 .. 53271048

Gene Structure 4665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG331300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTAGTTATGCCTTCTCTTTGTTTGTGTTTAGTTAAGGTGAAATCTGTTTCTCCTCTGGTTGATATGGAAGGAGAGAGTAGCCATAATGACCCCTTGCAATTGATGTCTTTGAATTTTGGTGGGAGTGTTGCGAATCATCTCTCTTGTGCGCCACAACATGAACTGAACCAAAAGATGATCATGGAAGCTGGAAGTAGTGTGAACCAAACTGATGCGCTTGCATTACCTTGGATGGTTCAATCCCCAATGCCGGCTCAAAGTTGTGTTGACTTTCTAGCAGAAAGTTCATCATTTCTGCCAAAATCTCCTTATGAAGACATGCTAGAGAGGATTTCTTTATCTGGTAGTGGCATACATGCTGCTGGTGGAGTCTCTGAATTCCATAGAGATTTGTTATACTGCAGCAGTCTTGGAAAACCTACTGGTTCTAAATCAATTGATTTCTCTATGGACATGGATCCTTGGAAGCATCATACTTCATGGACAGATAATTTCACTGGGGCTAGTTTTGACAATGTTTCTCAAGTTGATCAAAAGTTAACACTGGCTGCACCTGGTTTGTCTTCCCAGCCACGTCAAAGTGCTACAAAACAGAAAGCTCTTGTAACTGATCGTGCTCGTAGGATCCGAATTGCTGAAAGGGTAACTGCACTGGAAGAACTGCTTCCACAATCTGTAGAGGGTGGTCAAGAATTTGTACTGGATGATGTCATTGACCATATCAAGTTTTTGCAGCTTCAAATAAAGGATCTAAGTAAAAGCAGATTGGGAGGTGAAACAATTACTGAACCGATGATTTTCCGCGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

271

Amino Acids

29.71

Weight (kDa)

5.24

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	807
AciI	CCGC	1 cut(s)	805
AclWI	GGATC	5 cut(s)	455, 468, 622, 635, 759
AcsI	RAATTY	3 cut(s)	115, 380, 695
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	115, 242, 743
AjiI	CACGTC	1 cut(s)	578
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	3 cut(s)	191, 602, 739
AluI	AGCT	3 cut(s)	191, 602, 739
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	5 cut(s)	455, 468, 622, 635, 759
ApeKI	GCWGC	4 cut(s)	362, 405, 551, 736
ApoI	RAATTY	3 cut(s)	115, 380, 695
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	2 cut(s)	154, 220
AsuHPI	GGTGA	2 cut(s)	52, 788
BamHI	GGATCC	2 cut(s)	460, 627
BbsI	GAAGAC	2 cut(s)	324, 558
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	4 cut(s)	349, 417, 538, 748
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	2 cut(s)	180, 532
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	3 cut(s)	278, 326, 507
BfmI	CTRYAG	2 cut(s)	403, 678
BisI	GCNGC	4 cut(s)	363, 406, 552, 737
BlsI	GCNGC	4 cut(s)	364, 407, 553, 738
Bme1390I	CCNGG	1 cut(s)	558
BmgBI	CACGTC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	462, 629
BmrFI	CCNGG	1 cut(s)	558
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	205, 481
BmuI	ACTGGG	1 cut(s)	510
BpiI	GAAGAC	2 cut(s)	324, 558
BpuEI	CTTGAG	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	230, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	5 cut(s)	430, 505, 552, 660, 708
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	230, 464
BseGI	GGATG	2 cut(s)	240, 712
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseNI	ACTGG	5 cut(s)	430, 505, 552, 660, 708
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	349, 417, 538, 748
BseYI	CCCAGC	1 cut(s)	570
BsgI	GTGCAG	2 cut(s)	537, 636
Bsh1236I	CGCG	1 cut(s)	807
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	6 cut(s)	180, 460, 532, 613, 627, 751
BspACI	CCGC	1 cut(s)	805
BspFNI	CGCG	1 cut(s)	807
BspLI	GGNNCC	2 cut(s)	462, 629
BspMAI	CTGCAG	1 cut(s)	407
BspPI	GGATC	5 cut(s)	455, 468, 622, 635, 759
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	5 cut(s)	430, 505, 552, 660, 708
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	230, 464
BssMI	GATC	6 cut(s)	180, 460, 532, 613, 627, 751
BssT1I	CCWWGG	2 cut(s)	230, 464
Bst2UI	CCWGG	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	222, 255
BstDEI	CTNAG	1 cut(s)	755
BstF5I	GGATG	2 cut(s)	240, 712
BstFNI	CGCG	1 cut(s)	807
BstHHI	GCGC	2 cut(s)	154, 220
BstKTI	GATC	6 cut(s)	183, 463, 535, 616, 630, 754
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	6 cut(s)	180, 460, 532, 613, 627, 751
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	2 cut(s)	325, 362
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	2 cut(s)	403, 678
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	4 cut(s)	349, 417, 538, 748
BstV2I	GAAGAC	2 cut(s)	324, 558
BstX2I	RGATCY	3 cut(s)	460, 627, 751
BstYI	RGATCY	3 cut(s)	460, 627, 751
BtrI	CACGTC	1 cut(s)	578
BtsCI	GGATG	2 cut(s)	240, 712
BtsIMutI	CAGTG	3 cut(s)	498, 545, 653
Cac8I	GCNNGC	2 cut(s)	222, 255
CfoI	GCGC	2 cut(s)	154, 220
Cfr10I	RCCGGY	1 cut(s)	253
CsiI	ACCWGGT	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	6 cut(s)	161, 184, 322, 359, 457, 483
CviJI	RGCY	8 cut(s)	84, 191, 257, 506, 551, 574, 602, 739
CviKI_1	RGCY	8 cut(s)	84, 191, 257, 506, 551, 574, 602, 739
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	1 cut(s)	755
DpnI	GATC	6 cut(s)	182, 462, 534, 615, 629, 753
DpnII	GATC	6 cut(s)	180, 460, 532, 613, 627, 751
Eco130I	CCWWGG	2 cut(s)	230, 464
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	230, 464
ErhI	CCWWGG	2 cut(s)	230, 464
FaeI	CATG	6 cut(s)	164, 187, 325, 362, 460, 486
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FatI	CATG	6 cut(s)	160, 183, 321, 358, 456, 482
FbaI	TGATCA	2 cut(s)	180, 532
Fnu4HI	GCNGC	4 cut(s)	363, 406, 552, 737
FokI	GGATG	2 cut(s)	247, 719
Fsp4HI	GCNGC	4 cut(s)	363, 406, 552, 737
FspBI	CTAG	3 cut(s)	278, 326, 507
GlaI	GCGC	2 cut(s)	153, 219
GluI	GCNGC	4 cut(s)	363, 406, 552, 737
GsaI	CCCAGC	1 cut(s)	574
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	2 cut(s)	154, 220
Hin1II	CATG	6 cut(s)	164, 187, 325, 362, 460, 486
Hin6I	GCGC	2 cut(s)	152, 218
HinP1I	GCGC	2 cut(s)	152, 218
HincII	GTYRAC	2 cut(s)	271, 543
HindII	GTYRAC	2 cut(s)	271, 543
HinfI	GANTC	2 cut(s)	136, 372
HpaI	GTTAAC	1 cut(s)	543
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	52, 788
Hpy166II	GTNNAC	3 cut(s)	205, 271, 543
Hpy188I	TCNGA	2 cut(s)	379, 632
Hpy188III	TCNNGA	1 cut(s)	692
Hpy8I	GTNNAC	3 cut(s)	205, 271, 543
HpyAV	CCTTC	2 cut(s)	24, 65
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	6 cut(s)	100, 224, 405, 554, 653, 736
HpyF3I	CTNAG	1 cut(s)	755
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	6 cut(s)	164, 187, 325, 362, 460, 486
HspAI	GCGC	2 cut(s)	152, 218
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Ksp22I	TGATCA	2 cut(s)	180, 532
KspAI	GTTAAC	1 cut(s)	543
Kzo9I	GATC	6 cut(s)	180, 460, 532, 613, 627, 751
Lsp1109I	GCAGC	4 cut(s)	349, 417, 538, 748
LweI	GCATC	2 cut(s)	205, 481
MabI	ACCWGGT	1 cut(s)	556
MaeI	CTAG	3 cut(s)	278, 326, 507
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	2 cut(s)	607, 646
MalI	GATC	6 cut(s)	182, 462, 534, 615, 629, 753
MboI	GATC	6 cut(s)	180, 460, 532, 613, 627, 751
MboII	GAAGA	3 cut(s)	329, 558, 671
MfeI	CAATTG	2 cut(s)	101, 438
MflI	RGATCY	3 cut(s)	460, 627, 751
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	8 cut(s)	101, 115, 380, 438, 493, 633, 695, 783
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	5 cut(s)	66, 324, 676, 767, 802
MroNI	GCCGGC	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	2 cut(s)	36, 542
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	558
MunI	CAATTG	2 cut(s)	101, 438
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	1 cut(s)	807
NaeI	GCCGGC	1 cut(s)	255
NdeII	GATC	6 cut(s)	180, 460, 532, 613, 627, 751
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	6 cut(s)	164, 187, 325, 362, 460, 486
NlaIV	GGNNCC	2 cut(s)	462, 629
NspI	RCATGY	2 cut(s)	325, 362
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PdiI	GCCGGC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	364, 407, 553, 738
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	556
PspFI	CCCAGC	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	2 cut(s)	462, 629
PstI	CTGCAG	1 cut(s)	407
PsuI	RGATCY	3 cut(s)	460, 627, 751
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
SaqAI	TTAA	2 cut(s)	36, 542
SatI	GCNGC	4 cut(s)	363, 406, 552, 737
Sau3AI	GATC	6 cut(s)	180, 460, 532, 613, 627, 751
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	622
SexAI	ACCWGGT	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	205, 481
SfcI	CTRYAG	2 cut(s)	403, 678
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	8 cut(s)	101, 115, 380, 438, 493, 633, 695, 783
SsiI	CCGC	1 cut(s)	805
SspMI	CTAG	3 cut(s)	278, 326, 507
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	230, 464
TaiI	ACGT	1 cut(s)	580
TasI	AATT	8 cut(s)	101, 115, 380, 438, 493, 633, 695, 783
TatI	WGTACW	1 cut(s)	700
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	36, 542
Tru9I	TTAA	2 cut(s)	36, 542
TscAI	CASTG	3 cut(s)	505, 552, 660
TseI	GCWGC	4 cut(s)	362, 405, 551, 736
TspDTI	ATGAA	4 cut(s)	177, 279, 330, 471
TspRI	CASTG	3 cut(s)	505, 552, 660
XapI	RAATTY	3 cut(s)	115, 380, 695
XceI	RCATGY	2 cut(s)	325, 362
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	3 cut(s)	278, 326, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.