Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Forward (+)

21237946 .. 21242169

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G243500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAAGGACAGAGTAGCCTCACCGACCCGATGCAATTGGTGCCGTTGGATTTTTGTGGGGATGCTGCCATTGATGTCTCTCAGGCAACTGGAGATGATCCAAGCCAACAAGTTATCATGGCAGCTGAAGGGACTGCATACCAAACTGATGATCTTTTTTCACCTTGGTGGACTGAAAAACCAAAGCCATCTCTCGATTCTCTCAATTATGTTGAGTTTCAAGCAGAAAGTTCAACATTTCTCCCCAAGGATCGTAGTGAAGATATATTAGAAAGCATTCCTTTATCTGTTTCTGGCATAGATGATGTTGGTGGGGTCTCTGAATTTCAAAGAGAGGTGTTGTACAGCAGTCTGCGAAATGCTTGCGGTTCTAAACTAACTGATTTCTCTATGGACATGGACGAATGGAAGCAGGTGAGATGTCTGAGGCCAGTGAATGACGAACTTGTGAATGCACAACATCAACTTCACGCCAAGTATCATACTTCAAGGACAGATAATTTATGTGGGGATAAAAAGGATAGTGTTTCTCAAGTTGATCCAAGAGCAAGAAGTGCTTTACCTGATTTTCATTCCCAACCACATTGCCACATTTCGACACAGAGAGCTGCAGTAACTGATCGCACTCGCAGGATGCGAATTGCTGAAAGACTTGATGCATTGCGAGAACTGCTTCCAATATCCACAGAGGGTGGTCAGGCATTTGTAGTGGATGATGTAATTGACCATATCAAGTTTTTGCAGCTTCAAATAAAGGATTTATGTAGAAGCAGATTGGGAGGTGAAACAATTACTGAACCTATCATTTTCCGCGAGGGATATGGTCACTACTTTTGCCACCAGAATATGCTAAATGAACCTCTTGAAGAGATGATGGGAAAATTGCTGGAGACAAATCCAATGGCAGCAAGTCAGCTGTTGGAGAACAAGGATCTTTTGCTGCTGCCAATGGATTACTCTGAACCATTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

325

Amino Acids

36.45

Weight (kDa)

4.67

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	1 cut(s)	813
AciI	CCGC	2 cut(s)	366, 811
AclWI	GGATC	4 cut(s)	92, 258, 533, 939
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	344
AgsI	TTSAA	6 cut(s)	221, 234, 329, 489, 749, 866
AleI	CACNNNNGTG	1 cut(s)	166
AluBI	AGCT	5 cut(s)	125, 608, 745, 916, 971
AluI	AGCT	5 cut(s)	125, 608, 745, 916, 971
Alw26I	GTCTC	3 cut(s)	82, 322, 884
AlwI	GGATC	4 cut(s)	92, 258, 533, 939
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	7 cut(s)	65, 122, 608, 742, 905, 940, 943
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	2 cut(s)	276, 672
AsuHPI	GGTGA	4 cut(s)	13, 153, 427, 794
BanI	GGYRCC	1 cut(s)	40
BbvI	GCAGC	7 cut(s)	52, 134, 595, 754, 917, 927, 930
BccI	CCATC	2 cut(s)	196, 868
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	345, 379
BcoDI	GTCTC	3 cut(s)	82, 322, 884
BfmI	CTRYAG	1 cut(s)	609
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	7 cut(s)	66, 123, 609, 743, 906, 941, 944
BlsI	GCNGC	7 cut(s)	67, 124, 610, 744, 907, 942, 945
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	4 cut(s)	21, 52, 624, 646
BpmI	CTGGAG	2 cut(s)	111, 908
BpuEI	CTTGAG	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	164, 246
Bse1I	ACTGG	2 cut(s)	94, 431
Bse3DI	GCAATG	2 cut(s)	583, 659
BseDI	CCNNGG	2 cut(s)	164, 246
BseGI	GGATG	3 cut(s)	67, 639, 718
BseMI	GCAATG	2 cut(s)	583, 659
BseMII	CTCAG	2 cut(s)	95, 416
BseNI	ACTGG	2 cut(s)	94, 431
BseXI	GCAGC	7 cut(s)	52, 134, 595, 754, 917, 927, 930
Bsh1236I	CGCG	1 cut(s)	813
BshFI	GGCC	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	3 cut(s)	82, 322, 884
BsmFI	GGGAC	1 cut(s)	145
BsmI	GAATGC	2 cut(s)	276, 457
BsnI	GGCC	1 cut(s)	430
Bso31I	GGTCTC	1 cut(s)	322
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	6 cut(s)	97, 151, 250, 538, 619, 931
BspACI	CCGC	2 cut(s)	366, 811
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	2 cut(s)	94, 417
BspFNI	CGCG	1 cut(s)	813
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	613
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	4 cut(s)	92, 258, 533, 939
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	322
BsrDI	GCAATG	2 cut(s)	583, 659
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	94, 431
BssECI	CCNNGG	2 cut(s)	164, 246
BssMI	GATC	6 cut(s)	97, 151, 250, 538, 619, 931
BssT1I	CCWWGG	2 cut(s)	164, 246
Bst6I	CTCTTC	1 cut(s)	861
BstAPI	GCANNNNNTGC	2 cut(s)	40, 554
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	81, 425
BstF5I	GGATG	3 cut(s)	67, 639, 718
BstFNI	CGCG	1 cut(s)	813
BstKTI	GATC	6 cut(s)	100, 154, 253, 541, 622, 934
BstMAI	GTCTC	3 cut(s)	82, 322, 884
BstMBI	GATC	6 cut(s)	97, 151, 250, 538, 619, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 554, 670
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	1 cut(s)	813
BstV1I	GCAGC	7 cut(s)	52, 134, 595, 754, 917, 927, 930
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
BsuRI	GGCC	1 cut(s)	430
BtsCI	GGATG	3 cut(s)	67, 639, 718
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	364
CaiI	CAGNNNCTG	1 cut(s)	617
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	118, 397
CviJI	RGCY	9 cut(s)	18, 105, 125, 187, 430, 608, 745, 916, 971
CviKI_1	RGCY	9 cut(s)	18, 105, 125, 187, 430, 608, 745, 916, 971
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	81, 425
DpnI	GATC	6 cut(s)	99, 153, 252, 540, 621, 933
DpnII	GATC	6 cut(s)	97, 151, 250, 538, 619, 931
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Eco130I	CCWWGG	2 cut(s)	164, 246
Eco31I	GGTCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	164, 246
EcoT22I	ATGCAT	1 cut(s)	661
ErhI	CCWWGG	2 cut(s)	164, 246
FaeI	CATG	2 cut(s)	121, 400
FalI	AAGNNNNNCTT	4 cut(s)	265, 297, 541, 573
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	2 cut(s)	117, 396
Fnu4HI	GCNGC	7 cut(s)	66, 123, 609, 743, 906, 941, 944
FokI	GGATG	3 cut(s)	74, 646, 725
Fsp4HI	GCNGC	7 cut(s)	66, 123, 609, 743, 906, 941, 944
GluI	GCNGC	7 cut(s)	66, 123, 609, 743, 906, 941, 944
GsuI	CTGGAG	2 cut(s)	111, 908
HaeIII	GGCC	1 cut(s)	430
Hin1II	CATG	2 cut(s)	121, 400
HinfI	GANTC	1 cut(s)	197
HphI	GGTGA	4 cut(s)	13, 153, 427, 794
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	3 cut(s)	322, 426, 961
Hpy188III	TCNNGA	2 cut(s)	194, 863
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	122
HpyCH4V	TGCA	6 cut(s)	34, 137, 455, 611, 659, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 554, 670
HpyF3I	CTNAG	2 cut(s)	81, 425
Hsp92II	CATG	2 cut(s)	121, 400
Kzo9I	GATC	6 cut(s)	97, 151, 250, 538, 619, 931
Lsp1109I	GCAGC	7 cut(s)	52, 134, 595, 754, 917, 927, 930
LweI	GCATC	4 cut(s)	21, 52, 624, 646
MaeIII	GTNAC	2 cut(s)	613, 824
MalI	GATC	6 cut(s)	99, 153, 252, 540, 621, 933
MboI	GATC	6 cut(s)	97, 151, 250, 538, 619, 931
MboII	GAAGA	2 cut(s)	272, 878
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	931
MluCI	AATT	8 cut(s)	35, 205, 323, 499, 639, 720, 789, 881
MmeI	TCCRAC	2 cut(s)	27, 900
MnlI	CCTC	7 cut(s)	29, 328, 420, 682, 773, 808, 870
Mph1103I	ATGCAT	1 cut(s)	661
MroXI	GAANNNNTTC	2 cut(s)	276, 672
MslI	CAYNNNNRTG	1 cut(s)	166
MspA1I	CMGCKG	2 cut(s)	125, 916
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	2 cut(s)	276, 457
MvnI	CGCG	1 cut(s)	813
MwoI	GCNNNNNNNGC	3 cut(s)	40, 554, 670
NdeII	GATC	6 cut(s)	97, 151, 250, 538, 619, 931
NlaIII	CATG	2 cut(s)	121, 400
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	824
NsiI	ATGCAT	1 cut(s)	661
OliI	CACNNNNGTG	1 cut(s)	166
PaqCI	CACCTGC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	634
PctI	GAATGC	2 cut(s)	276, 457
PdmI	GAANNNNTTC	2 cut(s)	276, 672
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	7 cut(s)	67, 124, 610, 744, 907, 942, 945
PspN4I	GGNNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	931
PvuII	CAGCTG	2 cut(s)	125, 916
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	166
SatI	GCNGC	7 cut(s)	66, 123, 609, 743, 906, 941, 944
Sau3AI	GATC	6 cut(s)	97, 151, 250, 538, 619, 931
SfaNI	GCATC	4 cut(s)	21, 52, 624, 646
SfcI	CTRYAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
Sse9I	AATT	8 cut(s)	35, 205, 323, 499, 639, 720, 789, 881
SsiI	CCGC	2 cut(s)	366, 811
StyI	CCWWGG	2 cut(s)	164, 246
TaqI	TCGA	2 cut(s)	195, 596
TasI	AATT	8 cut(s)	35, 205, 323, 499, 639, 720, 789, 881
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	7 cut(s)	65, 122, 608, 742, 905, 940, 943
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	2 cut(s)	560, 870
TspRI	CASTG	1 cut(s)	438
XapI	RAATTY	1 cut(s)	323
XmnI	GAANNNNTTC	2 cut(s)	276, 672
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.