Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Forward (+)

19466216 .. 19470080

Gene Structure 3865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAAGAGAGAGAAGCCACAACAACCCCTTGCAGTTGATGTCTTTGAACTTTGGTGCGAGTAACACGCCACAAGATGATCAGAACCAAAAGATGATCATGGGAACTGGAAGCAGTGAGAACCAAAATGATCCATTTGCAGTACCTTGGATGGTTCAGTCCTCAATGCCGGCTCAAAATTGTGTCAACTTTCTAGCAGAAAGTTCGGCATATCTGCCAAAATCTCCTTATGAAGACATGCTGGAGAGGATTTCATTGTCTGTTAATGGCATACATGCTGCTGATGGTGGGGTATCTGAATTCCAAAGAGATTTGTTATATGGCAGCAGTCTTGGAAAAGCTTCTGGTTCTAAATCAATTGATTTCTCTATGGACATGGATCCCTGGAAGCATCATACTTCATGGACAGATACTATCACTGGGGCTAGTTTTGATGATGTTTCTCAAGTTGATCAAAAGTTAACATTGGCTGCACCTGGTTTTCCTTCACGGCCACGTCAAAGTGCTAAAGGACAGAAAACTCTTGTAACTGATCGTGCTCGCAGAATCCGAATTGCTGAAAGACTCACTGAGCTGGAAAAACTGCTTCCACATTCTGTAGAGGGTGGTCAAGAGTTTGTACTGGATGATGTCATTGACCATATCAAGTTTTTGCAGCTTCAAATAAAGGATCTAAGTAGAAGCAGATTGGGAGGTGAAGCAGTTGCTGAACCTATGATTTTCCGCGAGGGATATGGTCACTACTTCTTACACCAGCAGATGCTGAGTGAACCTCTTGAAGAGATGATCGGAAAGTTGCTGGAGACAAATCCGGTGGCAGCAGACCAGCTGTTAAGGGACAAGGGTCTCTCTTTGGTGCCTCTGGGATGGACTACGAAGTTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

296

Amino Acids

32.92

Weight (kDa)

5.3

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	856
AccII	CGCG	1 cut(s)	726
AciI	CCGC	1 cut(s)	724
AclWI	GGATC	4 cut(s)	125, 374, 387, 678
AcoI	YGGCCR	1 cut(s)	491
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	2 cut(s)	144, 621
AgsI	TTSAA	3 cut(s)	49, 662, 779
AjiI	CACGTC	1 cut(s)	497
AjnI	CCWGG	2 cut(s)	383, 475
AluBI	AGCT	4 cut(s)	341, 574, 658, 829
AluI	AGCT	4 cut(s)	341, 574, 658, 829
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	2 cut(s)	797, 851
AlwI	GGATC	4 cut(s)	125, 374, 387, 678
AlwNI	CAGNNNCTG	2 cut(s)	707, 763
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	5 cut(s)	278, 324, 470, 655, 818
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	2 cut(s)	340, 881
AsuHPI	GGTGA	1 cut(s)	707
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	856
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	5 cut(s)	265, 336, 457, 667, 830
BccI	CCATC	3 cut(s)	145, 278, 861
BceAI	ACGGC	1 cut(s)	506
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	2 cut(s)	385, 477
BclI	TGATCA	3 cut(s)	79, 96, 451
BcoDI	GTCTC	2 cut(s)	797, 851
BfaI	CTAG	2 cut(s)	194, 426
BfmI	CTRYAG	1 cut(s)	597
BisI	GCNGC	5 cut(s)	279, 325, 471, 656, 819
BlsI	GCNGC	5 cut(s)	280, 326, 472, 657, 820
Bme1390I	CCNGG	2 cut(s)	385, 477
BmgBI	CACGTC	1 cut(s)	497
BmiI	GGNNCC	2 cut(s)	381, 858
BmrFI	CCNGG	2 cut(s)	385, 477
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	400, 750
BmuI	ACTGGG	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	843
BpiI	GAAGAC	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	757, 789
BpmI	CTGGAG	2 cut(s)	263, 821
BpuEI	CTTGAG	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	851
BsaJI	CCNNGG	2 cut(s)	146, 383
BsaWI	WCCGGW	1 cut(s)	811
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	3 cut(s)	112, 424, 627
BseBI	CCWGG	2 cut(s)	385, 477
BseDI	CCNNGG	2 cut(s)	146, 383
BseGI	GGATG	3 cut(s)	156, 631, 872
BseMII	CTCAG	2 cut(s)	561, 755
BseNI	ACTGG	3 cut(s)	112, 424, 627
BseXI	GCAGC	5 cut(s)	265, 336, 457, 667, 830
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	726
BshFI	GGCC	1 cut(s)	493
BshNI	GGYRCC	1 cut(s)	856
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	170, 812
BslFI	GGGAC	1 cut(s)	851
BsmAI	GTCTC	2 cut(s)	797, 851
BsmFI	GGGAC	1 cut(s)	851
BsnI	GGCC	1 cut(s)	493
Bso31I	GGTCTC	1 cut(s)	851
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	8 cut(s)	79, 96, 130, 379, 451, 532, 670, 786
BspACI	CCGC	1 cut(s)	724
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	2 cut(s)	562, 756
BspFNI	CGCG	1 cut(s)	726
BspLI	GGNNCC	2 cut(s)	381, 858
BspPI	GGATC	4 cut(s)	125, 374, 387, 678
BspT107I	GGYRCC	1 cut(s)	856
BspTNI	GGTCTC	1 cut(s)	851
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	3 cut(s)	112, 424, 627
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	146, 383
BssMI	GATC	8 cut(s)	79, 96, 130, 379, 451, 532, 670, 786
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	2 cut(s)	385, 477
Bst6I	CTCTTC	1 cut(s)	774
BstC8I	GCNNGC	2 cut(s)	171, 541
BstDEI	CTNAG	3 cut(s)	570, 674, 764
BstF5I	GGATG	3 cut(s)	156, 631, 872
BstFNI	CGCG	1 cut(s)	726
BstKTI	GATC	8 cut(s)	82, 99, 133, 382, 454, 535, 673, 789
BstMAI	GTCTC	2 cut(s)	797, 851
BstMBI	GATC	8 cut(s)	79, 96, 130, 379, 451, 532, 670, 786
BstNI	CCWGG	2 cut(s)	385, 477
BstNSI	RCATGY	2 cut(s)	241, 278
BstPAI	GACNNNNGTC	1 cut(s)	843
BstSCI	CCNGG	2 cut(s)	383, 475
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	726
BstV1I	GCAGC	5 cut(s)	265, 336, 457, 667, 830
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	379, 670
BstYI	RGATCY	2 cut(s)	379, 670
BsuRI	GGCC	1 cut(s)	493
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	3 cut(s)	156, 631, 872
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	3 cut(s)	121, 417, 567
Cac8I	GCNNGC	2 cut(s)	171, 541
CaiI	CAGNNNCTG	2 cut(s)	707, 763
Cfr10I	RCCGGY	1 cut(s)	169
CsiI	ACCWGGT	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	143, 620
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	5 cut(s)	100, 238, 275, 376, 402
CviJI	RGCY	9 cut(s)	18, 173, 341, 425, 470, 493, 574, 658, 829
CviKI_1	RGCY	9 cut(s)	18, 173, 341, 425, 470, 493, 574, 658, 829
CviQI	GTAC	2 cut(s)	143, 620
DdeI	CTNAG	3 cut(s)	570, 674, 764
DpnI	GATC	8 cut(s)	81, 98, 132, 381, 453, 534, 672, 788
DpnII	GATC	8 cut(s)	79, 96, 130, 379, 451, 532, 670, 786
EaeI	YGGCCR	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco130I	CCWWGG	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	851
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	383, 475
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	5 cut(s)	103, 241, 278, 379, 405
FaqI	GGGAC	1 cut(s)	851
FatI	CATG	5 cut(s)	99, 237, 274, 375, 401
FbaI	TGATCA	3 cut(s)	79, 96, 451
Fnu4HI	GCNGC	5 cut(s)	279, 325, 471, 656, 819
FokI	GGATG	3 cut(s)	163, 638, 879
Fsp4HI	GCNGC	5 cut(s)	279, 325, 471, 656, 819
FspBI	CTAG	2 cut(s)	194, 426
GluI	GCNGC	5 cut(s)	279, 325, 471, 656, 819
GsuI	CTGGAG	2 cut(s)	263, 821
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	2 cut(s)	170, 812
Hin1II	CATG	5 cut(s)	103, 241, 278, 379, 405
HincII	GTYRAC	2 cut(s)	187, 462
HindII	GTYRAC	2 cut(s)	187, 462
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	2 cut(s)	546, 564
HpaI	GTTAAC	1 cut(s)	462
HpaII	CCGG	2 cut(s)	170, 812
HphI	GGTGA	1 cut(s)	707
Hpy166II	GTNNAC	3 cut(s)	187, 462, 770
Hpy188I	TCNGA	5 cut(s)	84, 298, 551, 791, 887
Hpy188III	TCNNGA	2 cut(s)	611, 776
Hpy8I	GTNNAC	3 cut(s)	187, 462, 770
HpyAV	CCTTC	1 cut(s)	495
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	4 cut(s)	34, 140, 473, 655
HpyF3I	CTNAG	3 cut(s)	570, 674, 764
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	5 cut(s)	103, 241, 278, 379, 405
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Ksp22I	TGATCA	3 cut(s)	79, 96, 451
KspAI	GTTAAC	1 cut(s)	462
Kzo9I	GATC	8 cut(s)	79, 96, 130, 379, 451, 532, 670, 786
Lsp1109I	GCAGC	5 cut(s)	265, 336, 457, 667, 830
LweI	GCATC	2 cut(s)	400, 750
MabI	ACCWGGT	1 cut(s)	475
MaeI	CTAG	2 cut(s)	194, 426
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	3 cut(s)	62, 526, 737
MalI	GATC	8 cut(s)	81, 98, 132, 381, 453, 534, 672, 788
MboI	GATC	8 cut(s)	79, 96, 130, 379, 451, 532, 670, 786
MboII	GAAGA	2 cut(s)	245, 791
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	2 cut(s)	379, 670
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	4 cut(s)	178, 299, 357, 552
MlyI	GAGTC	1 cut(s)	558
MnlI	CCTC	7 cut(s)	172, 240, 595, 686, 721, 783, 870
MroNI	GCCGGC	1 cut(s)	169
MroXI	GAANNNNTTC	2 cut(s)	340, 881
MseI	TTAA	3 cut(s)	264, 461, 833
MspA1I	CMGCKG	1 cut(s)	829
MspI	CCGG	2 cut(s)	170, 812
MspR9I	CCNGG	2 cut(s)	385, 477
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	2 cut(s)	385, 477
MvnI	CGCG	1 cut(s)	726
NaeI	GCCGGC	1 cut(s)	171
NdeII	GATC	8 cut(s)	79, 96, 130, 379, 451, 532, 670, 786
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	5 cut(s)	103, 241, 278, 379, 405
NlaIV	GGNNCC	2 cut(s)	381, 858
NmuCI	GTSAC	1 cut(s)	737
NspI	RCATGY	2 cut(s)	241, 278
PcsI	WCGNNNNNNNCGW	1 cut(s)	547
PdiI	GCCGGC	1 cut(s)	171
PdmI	GAANNNNTTC	2 cut(s)	340, 881
PfeI	GAWTC	1 cut(s)	546
PkrI	GCNGC	5 cut(s)	280, 326, 472, 657, 820
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
PshAI	GACNNNNGTC	1 cut(s)	843
Psp6I	CCWGG	2 cut(s)	383, 475
PspGI	CCWGG	2 cut(s)	383, 475
PspN4I	GGNNCC	2 cut(s)	381, 858
PstNI	CAGNNNCTG	2 cut(s)	707, 763
PsuI	RGATCY	2 cut(s)	379, 670
PvuII	CAGCTG	1 cut(s)	829
RsaI	GTAC	2 cut(s)	144, 621
RsaNI	GTAC	2 cut(s)	143, 620
SaqAI	TTAA	3 cut(s)	264, 461, 833
SatI	GCNGC	5 cut(s)	279, 325, 471, 656, 819
Sau3AI	GATC	8 cut(s)	79, 96, 130, 379, 451, 532, 670, 786
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	2 cut(s)	385, 477
SduI	GDGCHC	1 cut(s)	541
SexAI	ACCWGGT	1 cut(s)	475
SfaNI	GCATC	2 cut(s)	400, 750
SfcI	CTRYAG	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	4 cut(s)	178, 299, 357, 552
SsiI	CCGC	1 cut(s)	724
SspMI	CTAG	2 cut(s)	194, 426
StyD4I	CCNGG	2 cut(s)	383, 475
StyI	CCWWGG	1 cut(s)	146
TaiI	ACGT	1 cut(s)	499
TasI	AATT	4 cut(s)	178, 299, 357, 552
TatI	WGTACW	1 cut(s)	619
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	3 cut(s)	264, 461, 833
Tru9I	TTAA	3 cut(s)	264, 461, 833
TscAI	CASTG	3 cut(s)	121, 424, 574
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	5 cut(s)	278, 324, 470, 655, 818
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	3 cut(s)	243, 246, 390
TspRI	CASTG	3 cut(s)	121, 424, 574
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	2 cut(s)	241, 278
XmnI	GAANNNNTTC	2 cut(s)	340, 881
XspI	CTAG	2 cut(s)	194, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.