Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Reverse (-)

15571044 .. 15574259

Gene Structure 3216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAAGGAGAGAGTAGCCATAATGACCCCTTGCAATTGATGTCTTTGAATTATGGTGGGAGTGTTGCAAATCATGTCTCTCATGCGCCACAACATGAACTGAACCAAAAGATGATCATGGAAGCTGGAAGTAGTGTGAACCAAACTGATGCGCTTGCATTACCTTGGATGGTTCAATCCCCAATGCAGGCTCAAAGTTGTGTTGACTTTCTAGCAGAAAGTTCATCATTTCTGCCAAAATCTCCTTATGAAGACATGCTAGAGAGGATTTCTTTATCTGGTAGTGGCATACATGCTGCTGGTGGAGTCTCTGAATTCCATAGGGATTTGTTATACTGCAGCAGTCTTGGAAAAGCTTCTGGTTCTAAATCAATTGATTTCTCTATGGACATGGATCCTTGGAAGCATCATACTTCATGGACAGATAATTTCACTGGGGCTAGTTTTGACAATGTTTCTCAAGTTGATCAAAAGTTAACACTGGCTGCACCTGGTTTTCCTTCCCAGTCACATCAAAGTGCTACAAAACAGAAGGCTCTTGTAACTGATCGTAGCAGGCTCGTAGGATCCGAATTGCTGAAAGAGGTAACTGCACTGGAAGAATTGCTTCCACAATCTGTAGAGGGTGGTCAAGAATTTGTACTGGATGATGTCATTGACCATATCAAGTTTTTGCAGCTTCAAATAAAGGATCTAAGTAAAAGCAGATTGGGAGGTGAAACAATTACTGAACCGATGATTTTCCGCGAGGGATATGGTCACTACTTCTTACGCCAGCAAATGCTGAGTGAACCTCTTGAAGAGATGATCGGAAAATTGCTGGAGACAAATCCAGCAGCAGCAGACCAGCTGTTAAAGGACAAGGGTCTTTCGATGGTGCCTCTGGGTTTAACCAAGAAATTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

302

Amino Acids

33.21

Weight (kDa)

5.1

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	877
AccII	CGCG	1 cut(s)	747
AciI	CCGC	1 cut(s)	745
AclWI	GGATC	5 cut(s)	389, 402, 561, 574, 699
AcsI	RAATTY	2 cut(s)	314, 635
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	4 cut(s)	49, 176, 683, 800
AjnI	CCWGG	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	1 cut(s)	887
AluBI	AGCT	4 cut(s)	125, 356, 679, 850
AluI	AGCT	4 cut(s)	125, 356, 679, 850
Alw26I	GTCTC	3 cut(s)	82, 313, 818
AlwI	GGATC	5 cut(s)	389, 402, 561, 574, 699
ApeKI	GCWGC	6 cut(s)	296, 339, 485, 676, 836, 839
ApoI	RAATTY	2 cut(s)	314, 635
Asp700I	GAANNNNTTC	3 cut(s)	355, 606, 902
AspLEI	GCGC	2 cut(s)	88, 154
AsuHPI	GGTGA	1 cut(s)	728
BamHI	GGATCC	2 cut(s)	394, 566
BanI	GGYRCC	1 cut(s)	877
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	6 cut(s)	283, 351, 472, 688, 848, 851
BccI	CCATC	2 cut(s)	163, 868
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	2 cut(s)	114, 466
BcoDI	GTCTC	3 cut(s)	82, 313, 818
BfaI	CTAG	3 cut(s)	212, 260, 441
BfmI	CTRYAG	2 cut(s)	337, 618
BisI	GCNGC	6 cut(s)	297, 340, 486, 677, 837, 840
BlsI	GCNGC	6 cut(s)	298, 341, 487, 678, 838, 841
Bme1390I	CCNGG	1 cut(s)	492
BmiI	GGNNCC	3 cut(s)	396, 568, 879
BmrFI	CCNGG	1 cut(s)	492
BmrI	ACTGGG	2 cut(s)	444, 499
BmsI	GCATC	2 cut(s)	139, 415
BmuI	ACTGGG	2 cut(s)	444, 499
BoxI	GACNNNNGTC	1 cut(s)	864
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	778, 810
BpmI	CTGGAG	1 cut(s)	842
BpuEI	CTTGAG	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	164, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	5 cut(s)	439, 486, 505, 600, 648
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	164, 398
BseGI	GGATG	2 cut(s)	174, 652
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	776
BseNI	ACTGG	5 cut(s)	439, 486, 505, 600, 648
BseXI	GCAGC	6 cut(s)	283, 351, 472, 688, 848, 851
BsgI	GTGCAG	2 cut(s)	471, 576
Bsh1236I	CGCG	1 cut(s)	747
BshNI	GGYRCC	1 cut(s)	877
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	3 cut(s)	82, 313, 818
Bsp143I	GATC	7 cut(s)	114, 394, 466, 547, 566, 691, 807
BspACI	CCGC	1 cut(s)	745
BspCNI	CTCAG	1 cut(s)	777
BspFNI	CGCG	1 cut(s)	747
BspLI	GGNNCC	3 cut(s)	396, 568, 879
BspMAI	CTGCAG	1 cut(s)	341
BspPI	GGATC	5 cut(s)	389, 402, 561, 574, 699
BspT107I	GGYRCC	1 cut(s)	877
BsrI	ACTGG	5 cut(s)	439, 486, 505, 600, 648
BssECI	CCNNGG	2 cut(s)	164, 398
BssMI	GATC	7 cut(s)	114, 394, 466, 547, 566, 691, 807
BssT1I	CCWWGG	2 cut(s)	164, 398
Bst2UI	CCWGG	1 cut(s)	492
Bst6I	CTCTTC	1 cut(s)	795
BstC8I	GCNNGC	4 cut(s)	156, 189, 557, 776
BstDEI	CTNAG	2 cut(s)	695, 785
BstF5I	GGATG	2 cut(s)	174, 652
BstFNI	CGCG	1 cut(s)	747
BstHHI	GCGC	2 cut(s)	88, 154
BstKTI	GATC	7 cut(s)	117, 397, 469, 550, 569, 694, 810
BstMAI	GTCTC	3 cut(s)	82, 313, 818
BstMBI	GATC	7 cut(s)	114, 394, 466, 547, 566, 691, 807
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	2 cut(s)	259, 296
BstPAI	GACNNNNGTC	1 cut(s)	864
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	2 cut(s)	337, 618
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	6 cut(s)	283, 351, 472, 688, 848, 851
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	3 cut(s)	394, 566, 691
BstYI	RGATCY	3 cut(s)	394, 566, 691
BtsCI	GGATG	2 cut(s)	174, 652
BtsIMutI	CAGTG	3 cut(s)	432, 479, 593
Cac8I	GCNNGC	4 cut(s)	156, 189, 557, 776
CfoI	GCGC	2 cut(s)	88, 154
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	8 cut(s)	74, 83, 95, 118, 256, 293, 391, 417
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	2 cut(s)	695, 785
DpnI	GATC	7 cut(s)	116, 396, 468, 549, 568, 693, 809
DpnII	GATC	7 cut(s)	114, 394, 466, 547, 566, 691, 807
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
Eco130I	CCWWGG	2 cut(s)	164, 398
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	164, 398
ErhI	CCWWGG	2 cut(s)	164, 398
FaeI	CATG	8 cut(s)	77, 86, 98, 121, 259, 296, 394, 420
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FatI	CATG	8 cut(s)	73, 82, 94, 117, 255, 292, 390, 416
FbaI	TGATCA	2 cut(s)	114, 466
Fnu4HI	GCNGC	6 cut(s)	297, 340, 486, 677, 837, 840
FokI	GGATG	2 cut(s)	181, 659
Fsp4HI	GCNGC	6 cut(s)	297, 340, 486, 677, 837, 840
FspBI	CTAG	3 cut(s)	212, 260, 441
GlaI	GCGC	2 cut(s)	87, 153
GluI	GCNGC	6 cut(s)	297, 340, 486, 677, 837, 840
GsuI	CTGGAG	1 cut(s)	842
HhaI	GCGC	2 cut(s)	88, 154
Hin1II	CATG	8 cut(s)	77, 86, 98, 121, 259, 296, 394, 420
Hin6I	GCGC	2 cut(s)	86, 152
HinP1I	GCGC	2 cut(s)	86, 152
HincII	GTYRAC	2 cut(s)	205, 477
HindII	GTYRAC	2 cut(s)	205, 477
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	1 cut(s)	306
HpaI	GTTAAC	1 cut(s)	477
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	4 cut(s)	139, 205, 477, 791
Hpy188I	TCNGA	4 cut(s)	313, 571, 812, 908
Hpy188III	TCNNGA	2 cut(s)	632, 797
Hpy8I	GTNNAC	4 cut(s)	139, 205, 477, 791
HpyAV	CCTTC	2 cut(s)	510, 526
HpyCH4V	TGCA	8 cut(s)	34, 68, 158, 187, 339, 488, 593, 676
HpyF3I	CTNAG	2 cut(s)	695, 785
Hsp92II	CATG	8 cut(s)	77, 86, 98, 121, 259, 296, 394, 420
HspAI	GCGC	2 cut(s)	86, 152
Ksp22I	TGATCA	2 cut(s)	114, 466
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	7 cut(s)	114, 394, 466, 547, 566, 691, 807
Lsp1109I	GCAGC	6 cut(s)	283, 351, 472, 688, 848, 851
LweI	GCATC	2 cut(s)	139, 415
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	3 cut(s)	212, 260, 441
MaeIII	GTNAC	4 cut(s)	507, 541, 586, 758
MalI	GATC	7 cut(s)	116, 396, 468, 549, 568, 693, 809
MboI	GATC	7 cut(s)	114, 394, 466, 547, 566, 691, 807
MboII	GAAGA	3 cut(s)	263, 611, 812
MfeI	CAATTG	2 cut(s)	35, 372
MflI	RGATCY	3 cut(s)	394, 566, 691
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	7 cut(s)	258, 577, 616, 707, 742, 804, 891
MroXI	GAANNNNTTC	3 cut(s)	355, 606, 902
MseI	TTAA	3 cut(s)	476, 854, 890
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	850
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	2 cut(s)	35, 372
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	747
NdeII	GATC	7 cut(s)	114, 394, 466, 547, 566, 691, 807
NlaIII	CATG	8 cut(s)	77, 86, 98, 121, 259, 296, 394, 420
NlaIV	GGNNCC	3 cut(s)	396, 568, 879
NmuCI	GTSAC	2 cut(s)	507, 758
NspI	RCATGY	2 cut(s)	259, 296
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PdmI	GAANNNNTTC	3 cut(s)	355, 606, 902
PkrI	GCNGC	6 cut(s)	298, 341, 487, 678, 838, 841
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	864
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	3 cut(s)	396, 568, 879
PstI	CTGCAG	1 cut(s)	341
PsuI	RGATCY	3 cut(s)	394, 566, 691
PvuII	CAGCTG	1 cut(s)	850
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	476, 854, 890
SatI	GCNGC	6 cut(s)	297, 340, 486, 677, 837, 840
Sau3AI	GATC	7 cut(s)	114, 394, 466, 547, 566, 691, 807
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	492
SetI	ASST	9 cut(s)	127, 166, 358, 493, 588, 681, 718, 796, 852
SexAI	ACCWGGT	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	139, 415
SfcI	CTRYAG	2 cut(s)	337, 618
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
SsiI	CCGC	1 cut(s)	745
SspMI	CTAG	3 cut(s)	212, 260, 441
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	2 cut(s)	164, 398
TaqI	TCGA	1 cut(s)	872
TatI	WGTACW	1 cut(s)	640
Tru1I	TTAA	3 cut(s)	476, 854, 890
Tru9I	TTAA	3 cut(s)	476, 854, 890
TscAI	CASTG	3 cut(s)	439, 486, 600
TseFI	GTSAC	2 cut(s)	507, 758
TseI	GCWGC	6 cut(s)	296, 339, 485, 676, 836, 839
Tsp45I	GTSAC	2 cut(s)	507, 758
TspDTI	ATGAA	4 cut(s)	111, 213, 264, 405
TspRI	CASTG	3 cut(s)	439, 486, 600
XapI	RAATTY	2 cut(s)	314, 635
XceI	RCATGY	2 cut(s)	259, 296
XmnI	GAANNNNTTC	3 cut(s)	355, 606, 902
XspI	CTAG	3 cut(s)	212, 260, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.