Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Forward (+)

53530279 .. 53533565

Gene Structure 3287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG344500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAAGGAGAGAGTAGCCATAATGACCCCTTGCAATTGATGTCTTTGAATTTTGGTGGGAGTGTTGCGAATCATCTCTCTCGTGAGCCACAACATGAACTGAACCAAAAGATGATCATGGAAGCTGGAAGTAGTGTGAACCAAACTGATGCGCTTGCATTCCCTTGGATGGTTCAATCCCCAATGCCGGCTCAAAGTTGTGTTGACTTTCTAGCAGAAAGTTCAACATTTCTGCCAAAATCTCCTTATGAAGACATGCTAGAGAGGATTTCTTTATCTGGTAGTGGCATACATGCTGCTGGTGGAGTCTCTGAATTCCATAGAGATTTGTTATACTGCAGCAGTCTTGGAAAACCTTCTGGTTCTAGATCAATTGATTTCTCTATGGACATGGATCCTTGGAAGCATCATACTTCATGGACAGATAATTTCACTGGGGCTAGTTTTGACAATGTTTCTCAAGTTGATCAAAAGTTAACACTGGCTGCACCTGGTTTTCCTTCCCGGCCACGTCAAAGTGCTACAAAACAGAAAGCTCTTGTAACTGATCGTGCTCGTAGGATCCGAATTGCTGAAAGGGTAACTGCACTGGAAGAACTGCTTCCACAATCTGTAGAGGGTGGTCAAGAATTTGTACTGGATGATGTCATTGACCATATCAAGTTTTTGCAGCTTCAAATAAAGGATCTAAGTAAAAGCAGATTGGGAGGTGAAACGATTACTGAACCGATGATTTTCTGCGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

249

Amino Acids

27.56

Weight (kDa)

5.15

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	389, 402, 556, 569, 693
AcoI	YGGCCR	1 cut(s)	506
AcsI	RAATTY	3 cut(s)	49, 314, 629
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	2 cut(s)	169, 187
AgsI	TTSAA	4 cut(s)	49, 176, 225, 677
AjiI	CACGTC	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	3 cut(s)	125, 536, 673
AluI	AGCT	3 cut(s)	125, 536, 673
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	5 cut(s)	389, 402, 556, 569, 693
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	4 cut(s)	296, 339, 485, 670
ApoI	RAATTY	3 cut(s)	49, 314, 629
Asp700I	GAANNNNTTC	2 cut(s)	355, 600
AspLEI	GCGC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	722
BamHI	GGATCC	2 cut(s)	394, 561
BauI	CACGAG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	4 cut(s)	283, 351, 472, 682
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	2 cut(s)	114, 466
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	4 cut(s)	212, 260, 366, 441
BfmI	CTRYAG	2 cut(s)	337, 612
BisI	GCNGC	4 cut(s)	297, 340, 486, 671
BlsI	GCNGC	4 cut(s)	298, 341, 487, 672
Bme1390I	CCNGG	2 cut(s)	492, 505
BmgBI	CACGTC	1 cut(s)	512
BmiI	GGNNCC	2 cut(s)	396, 563
BmrFI	CCNGG	2 cut(s)	492, 505
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	139, 415
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	164, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 187
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	4 cut(s)	439, 486, 594, 642
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	164, 398
BseGI	GGATG	2 cut(s)	174, 646
BseLI	CCNNNNNNNGG	2 cut(s)	169, 187
BseNI	ACTGG	4 cut(s)	439, 486, 594, 642
BseXI	GCAGC	4 cut(s)	283, 351, 472, 682
BsgI	GTGCAG	2 cut(s)	471, 570
BshFI	GGCC	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	188, 505
BslI	CCNNNNNNNGG	2 cut(s)	169, 187
BsmAI	GTCTC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	7 cut(s)	114, 368, 394, 466, 547, 561, 685
BspANI	GGCC	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	396, 563
BspMAI	CTGCAG	1 cut(s)	341
BspPI	GGATC	5 cut(s)	389, 402, 556, 569, 693
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	4 cut(s)	439, 486, 594, 642
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	164, 398
BssMI	GATC	7 cut(s)	114, 368, 394, 466, 547, 561, 685
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	164, 398
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	156, 189
BstDEI	CTNAG	1 cut(s)	689
BstF5I	GGATG	2 cut(s)	174, 646
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	7 cut(s)	117, 371, 397, 469, 550, 564, 688
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	7 cut(s)	114, 368, 394, 466, 547, 561, 685
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	2 cut(s)	259, 296
BstSCI	CCNGG	2 cut(s)	490, 503
BstSFI	CTRYAG	2 cut(s)	337, 612
BstV1I	GCAGC	4 cut(s)	283, 351, 472, 682
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	3 cut(s)	394, 561, 685
BstYI	RGATCY	3 cut(s)	394, 561, 685
BsuRI	GGCC	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	512
BtsCI	GGATG	2 cut(s)	174, 646
BtsIMutI	CAGTG	3 cut(s)	432, 479, 587
Cac8I	GCNNGC	2 cut(s)	156, 189
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	187
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	6 cut(s)	95, 118, 256, 293, 391, 417
CviJI	RGCY	9 cut(s)	18, 88, 125, 191, 440, 485, 508, 536, 673
CviKI_1	RGCY	9 cut(s)	18, 88, 125, 191, 440, 485, 508, 536, 673
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	7 cut(s)	116, 370, 396, 468, 549, 563, 687
DpnII	GATC	7 cut(s)	114, 368, 394, 466, 547, 561, 685
EaeI	YGGCCR	1 cut(s)	506
Eco130I	CCWWGG	2 cut(s)	164, 398
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	164, 398
ErhI	CCWWGG	2 cut(s)	164, 398
FaeI	CATG	6 cut(s)	98, 121, 259, 296, 394, 420
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	6 cut(s)	94, 117, 255, 292, 390, 416
FbaI	TGATCA	2 cut(s)	114, 466
Fnu4HI	GCNGC	4 cut(s)	297, 340, 486, 671
FokI	GGATG	2 cut(s)	181, 653
Fsp4HI	GCNGC	4 cut(s)	297, 340, 486, 671
FspBI	CTAG	4 cut(s)	212, 260, 366, 441
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	4 cut(s)	297, 340, 486, 671
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	2 cut(s)	188, 505
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	6 cut(s)	98, 121, 259, 296, 394, 420
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	2 cut(s)	205, 477
HindII	GTYRAC	2 cut(s)	205, 477
HinfI	GANTC	2 cut(s)	70, 306
HpaI	GTTAAC	1 cut(s)	477
HpaII	CCGG	2 cut(s)	188, 505
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	3 cut(s)	139, 205, 477
Hpy188I	TCNGA	2 cut(s)	313, 566
Hpy188III	TCNNGA	3 cut(s)	83, 366, 626
Hpy8I	GTNNAC	3 cut(s)	139, 205, 477
HpyAV	CCTTC	2 cut(s)	366, 510
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	6 cut(s)	34, 158, 339, 488, 587, 670
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	6 cut(s)	98, 121, 259, 296, 394, 420
HspAI	GCGC	1 cut(s)	152
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Ksp22I	TGATCA	2 cut(s)	114, 466
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	7 cut(s)	114, 368, 394, 466, 547, 561, 685
Lsp1109I	GCAGC	4 cut(s)	283, 351, 472, 682
LweI	GCATC	2 cut(s)	139, 415
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	4 cut(s)	212, 260, 366, 441
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	2 cut(s)	541, 580
MalI	GATC	7 cut(s)	116, 370, 396, 468, 549, 563, 687
MboI	GATC	7 cut(s)	114, 368, 394, 466, 547, 561, 685
MboII	GAAGA	2 cut(s)	263, 605
MfeI	CAATTG	2 cut(s)	35, 372
MflI	RGATCY	3 cut(s)	394, 561, 685
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	7 cut(s)	35, 49, 314, 372, 427, 567, 629
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	4 cut(s)	258, 610, 701, 736
MroNI	GCCGGC	1 cut(s)	187
MroXI	GAANNNNTTC	2 cut(s)	355, 600
MseI	TTAA	1 cut(s)	476
MspI	CCGG	2 cut(s)	188, 505
MspR9I	CCNGG	2 cut(s)	492, 505
MunI	CAATTG	2 cut(s)	35, 372
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	492
NaeI	GCCGGC	1 cut(s)	189
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	7 cut(s)	114, 368, 394, 466, 547, 561, 685
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	6 cut(s)	98, 121, 259, 296, 394, 420
NlaIV	GGNNCC	2 cut(s)	396, 563
NspI	RCATGY	2 cut(s)	259, 296
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PctI	GAATGC	1 cut(s)	158
PdiI	GCCGGC	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	355, 600
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	298, 341, 487, 672
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	396, 563
PstI	CTGCAG	1 cut(s)	341
PsuI	RGATCY	3 cut(s)	394, 561, 685
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	4 cut(s)	297, 340, 486, 671
Sau3AI	GATC	7 cut(s)	114, 368, 394, 466, 547, 561, 685
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	2 cut(s)	492, 505
SduI	GDGCHC	1 cut(s)	556
SetI	ASST	8 cut(s)	127, 358, 493, 514, 538, 675, 712, 747
SexAI	ACCWGGT	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	139, 415
SfcI	CTRYAG	2 cut(s)	337, 612
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
Sse9I	AATT	7 cut(s)	35, 49, 314, 372, 427, 567, 629
SspMI	CTAG	4 cut(s)	212, 260, 366, 441
StyD4I	CCNGG	2 cut(s)	490, 503
StyI	CCWWGG	2 cut(s)	164, 398
TaiI	ACGT	1 cut(s)	514
TasI	AATT	7 cut(s)	35, 49, 314, 372, 427, 567, 629
TatI	WGTACW	1 cut(s)	634
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	3 cut(s)	439, 486, 594
TseI	GCWGC	4 cut(s)	296, 339, 485, 670
TspDTI	ATGAA	3 cut(s)	111, 264, 405
TspRI	CASTG	3 cut(s)	439, 486, 594
XapI	RAATTY	3 cut(s)	49, 314, 629
XbaI	TCTAGA	1 cut(s)	365
XceI	RCATGY	2 cut(s)	259, 296
XmnI	GAANNNNTTC	2 cut(s)	355, 600
XspI	CTAG	4 cut(s)	212, 260, 366, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.