Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Forward (+)

57082496 .. 57086146

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG338200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTTTAGTTCAGTTGCTAATCTAAGTTGCGAATCTGTATTGCAAATCCTCGCCTTTAAAGATTGTAGTGCTAAACTGAAGCCTTGTTCCAAAAAAGTTAAGGTGAAATCTGTTTCTCCTCTGGTTGATATGGAAGGAGAGAGTAGCCATAATGACCCCTTGCAATTGATGTCTTTAAATTTTGGTGGGAGTGTTGCGAATCATGTCTCTGGTGCGCCACAACATGATCTGAACCAAAAGATGATCATGGAAGCTGGAACTAGTGTGAACCAAACTGATGCGCTTGCATTACCTTGGATGGTTCAATCCCCAATGCCGGCTCAAAGTTGTGTTGACTATCTAGCAGAAAGTTCATCATTTCTGCCAAAATCTCCTTATGAAGACATGCTAGAGAGGATTTCTTTATCTGGTAGTGGCATACATGCTGCTGGTGGAGTCTCTGAATTCCATAGAGATTTGTTATACTGCAGCAGTCTTGGAAAAGCTTCTGGTTCTAAATCAATTGATTTCTCTATGGACATGGATCCTTGGAAGCATCATACTTCATGGACAGATAATTTCACTGGGGCTAGTTTTGACAATGTTTCTCAAGTTGATCAAAAGTTAACACTGGCTGCACCTGGTTTTCCTTCCCGGCCATGTCAAAGTGCTACAAAACAGAAAGCTCTTGTAACTGATCGTGCTCGTAGGATCCGAATTGCTGAAAGGGTAACTGCACTGGAAGAACTGCTTCCACAATCTGTAGAGGGTGGTCAAGAATTTGTACTGGATGATGTCATTGACCATATCAAGTTTTTGCAGCTTCAAATAAAGGATCTAAGTAAAAGCAGATTGGGAGGTGAAACAATTACTGAACCGATGATTTTCCGCGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

292

Amino Acids

31.91

Weight (kDa)

5.63

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	870
AciI	CCGC	1 cut(s)	868
AclWI	GGATC	5 cut(s)	518, 531, 685, 698, 822
AcoI	YGGCCR	1 cut(s)	635
AcsI	RAATTY	3 cut(s)	178, 443, 758
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	305, 806
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	4 cut(s)	254, 485, 665, 802
AluI	AGCT	4 cut(s)	254, 485, 665, 802
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	2 cut(s)	211, 442
AlwI	GGATC	5 cut(s)	518, 531, 685, 698, 822
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	4 cut(s)	425, 468, 614, 799
ApoI	RAATTY	3 cut(s)	178, 443, 758
Asp700I	GAANNNNTTC	2 cut(s)	484, 729
AspLEI	GCGC	2 cut(s)	217, 283
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	2 cut(s)	115, 851
BamHI	GGATCC	2 cut(s)	523, 690
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	4 cut(s)	412, 480, 601, 811
BccI	CCATC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	621
BclI	TGATCA	2 cut(s)	243, 595
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	211, 442
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	4 cut(s)	261, 341, 389, 570
BfmI	CTRYAG	2 cut(s)	466, 741
BisI	GCNGC	4 cut(s)	426, 469, 615, 800
BlsI	GCNGC	4 cut(s)	427, 470, 616, 801
Bme1390I	CCNGG	2 cut(s)	621, 634
BmiI	GGNNCC	2 cut(s)	525, 692
BmrFI	CCNGG	2 cut(s)	621, 634
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	268, 544
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	573
BpuMI	CCSGG	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	293, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	4 cut(s)	568, 615, 723, 771
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	293, 527
BseGI	GGATG	2 cut(s)	303, 775
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseNI	ACTGG	4 cut(s)	568, 615, 723, 771
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	4 cut(s)	412, 480, 601, 811
BsgI	GTGCAG	2 cut(s)	600, 699
Bsh1236I	CGCG	1 cut(s)	870
BshFI	GGCC	1 cut(s)	637
BsiHKAI	GWGCWC	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	317, 634
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	211, 442
BsnI	GGCC	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	7 cut(s)	226, 243, 523, 595, 676, 690, 814
BspACI	CCGC	1 cut(s)	868
BspANI	GGCC	1 cut(s)	637
BspFNI	CGCG	1 cut(s)	870
BspLI	GGNNCC	2 cut(s)	525, 692
BspMAI	CTGCAG	1 cut(s)	470
BspPI	GGATC	5 cut(s)	518, 531, 685, 698, 822
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	4 cut(s)	568, 615, 723, 771
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	293, 527
BssMI	GATC	7 cut(s)	226, 243, 523, 595, 676, 690, 814
BssT1I	CCWWGG	2 cut(s)	293, 527
Bst2UI	CCWGG	1 cut(s)	621
BstC8I	GCNNGC	2 cut(s)	285, 318
BstDEI	CTNAG	2 cut(s)	23, 818
BstF5I	GGATG	2 cut(s)	303, 775
BstFNI	CGCG	1 cut(s)	870
BstHHI	GCGC	2 cut(s)	217, 283
BstKTI	GATC	7 cut(s)	229, 246, 526, 598, 679, 693, 817
BstMAI	GTCTC	2 cut(s)	211, 442
BstMBI	GATC	7 cut(s)	226, 243, 523, 595, 676, 690, 814
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	2 cut(s)	388, 425
BstSCI	CCNGG	2 cut(s)	619, 632
BstSFI	CTRYAG	2 cut(s)	466, 741
BstUI	CGCG	1 cut(s)	870
BstV1I	GCAGC	4 cut(s)	412, 480, 601, 811
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	3 cut(s)	523, 690, 814
BstYI	RGATCY	3 cut(s)	523, 690, 814
BsuRI	GGCC	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	303, 775
BtsIMutI	CAGTG	3 cut(s)	561, 608, 716
Cac8I	GCNNGC	2 cut(s)	285, 318
CfoI	GCGC	2 cut(s)	217, 283
Cfr10I	RCCGGY	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	619
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	8 cut(s)	203, 224, 247, 385, 422, 520, 546, 639
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	2 cut(s)	23, 818
DpnI	GATC	7 cut(s)	228, 245, 525, 597, 678, 692, 816
DpnII	GATC	7 cut(s)	226, 243, 523, 595, 676, 690, 814
DraI	TTTAAA	2 cut(s)	58, 177
EaeI	YGGCCR	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	293, 527
Eco57I	CTGAAG	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	293, 527
ErhI	CCWWGG	2 cut(s)	293, 527
FaeI	CATG	8 cut(s)	206, 227, 250, 388, 425, 523, 549, 642
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FatI	CATG	8 cut(s)	202, 223, 246, 384, 421, 519, 545, 638
FbaI	TGATCA	2 cut(s)	243, 595
Fnu4HI	GCNGC	4 cut(s)	426, 469, 615, 800
FokI	GGATG	2 cut(s)	310, 782
Fsp4HI	GCNGC	4 cut(s)	426, 469, 615, 800
FspBI	CTAG	4 cut(s)	261, 341, 389, 570
GlaI	GCGC	2 cut(s)	216, 282
GluI	GCNGC	4 cut(s)	426, 469, 615, 800
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	2 cut(s)	317, 634
HhaI	GCGC	2 cut(s)	217, 283
Hin1II	CATG	8 cut(s)	206, 227, 250, 388, 425, 523, 549, 642
Hin6I	GCGC	2 cut(s)	215, 281
HinP1I	GCGC	2 cut(s)	215, 281
HincII	GTYRAC	2 cut(s)	334, 606
HindII	GTYRAC	2 cut(s)	334, 606
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	3 cut(s)	32, 199, 435
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	2 cut(s)	317, 634
HphI	GGTGA	2 cut(s)	115, 851
Hpy166II	GTNNAC	3 cut(s)	268, 334, 606
Hpy188I	TCNGA	3 cut(s)	231, 442, 695
Hpy188III	TCNNGA	1 cut(s)	755
Hpy8I	GTNNAC	3 cut(s)	268, 334, 606
HpyAV	CCTTC	2 cut(s)	128, 639
HpyCH4V	TGCA	7 cut(s)	43, 163, 287, 468, 617, 716, 799
HpyF3I	CTNAG	2 cut(s)	23, 818
Hsp92II	CATG	8 cut(s)	206, 227, 250, 388, 425, 523, 549, 642
HspAI	GCGC	2 cut(s)	215, 281
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
Ksp22I	TGATCA	2 cut(s)	243, 595
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	7 cut(s)	226, 243, 523, 595, 676, 690, 814
Lsp1109I	GCAGC	4 cut(s)	412, 480, 601, 811
LweI	GCATC	2 cut(s)	268, 544
MabI	ACCWGGT	1 cut(s)	619
MaeI	CTAG	4 cut(s)	261, 341, 389, 570
MaeIII	GTNAC	2 cut(s)	670, 709
MalI	GATC	7 cut(s)	228, 245, 525, 597, 678, 692, 816
MboI	GATC	7 cut(s)	226, 243, 523, 595, 676, 690, 814
MboII	GAAGA	2 cut(s)	392, 734
MfeI	CAATTG	2 cut(s)	164, 501
MflI	RGATCY	3 cut(s)	523, 690, 814
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	8 cut(s)	164, 178, 443, 501, 556, 696, 758, 846
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	6 cut(s)	59, 129, 387, 739, 830, 865
MroNI	GCCGGC	1 cut(s)	316
MroXI	GAANNNNTTC	2 cut(s)	484, 729
MseI	TTAA	4 cut(s)	57, 99, 176, 605
MspI	CCGG	2 cut(s)	317, 634
MspR9I	CCNGG	2 cut(s)	621, 634
MunI	CAATTG	2 cut(s)	164, 501
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	870
NaeI	GCCGGC	1 cut(s)	318
NciI	CCSGG	1 cut(s)	634
NdeII	GATC	7 cut(s)	226, 243, 523, 595, 676, 690, 814
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	8 cut(s)	206, 227, 250, 388, 425, 523, 549, 642
NlaIV	GGNNCC	2 cut(s)	525, 692
NspI	RCATGY	2 cut(s)	388, 425
PcsI	WCGNNNNNNNCGW	1 cut(s)	691
PdiI	GCCGGC	1 cut(s)	318
PdmI	GAANNNNTTC	2 cut(s)	484, 729
PfeI	GAWTC	2 cut(s)	32, 199
PkrI	GCNGC	4 cut(s)	427, 470, 616, 801
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	525, 692
PstI	CTGCAG	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	523, 690, 814
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
SaqAI	TTAA	4 cut(s)	57, 99, 176, 605
SatI	GCNGC	4 cut(s)	426, 469, 615, 800
Sau3AI	GATC	7 cut(s)	226, 243, 523, 595, 676, 690, 814
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	2 cut(s)	621, 634
SduI	GDGCHC	1 cut(s)	685
SetI	ASST	9 cut(s)	105, 256, 295, 487, 622, 667, 804, 841, 876
SexAI	ACCWGGT	1 cut(s)	619
SfaNI	GCATC	2 cut(s)	268, 544
SfcI	CTRYAG	2 cut(s)	466, 741
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	8 cut(s)	164, 178, 443, 501, 556, 696, 758, 846
SsiI	CCGC	1 cut(s)	868
SspMI	CTAG	4 cut(s)	261, 341, 389, 570
StyD4I	CCNGG	2 cut(s)	619, 632
StyI	CCWWGG	2 cut(s)	293, 527
TasI	AATT	8 cut(s)	164, 178, 443, 501, 556, 696, 758, 846
TatI	WGTACW	1 cut(s)	763
TfiI	GAWTC	2 cut(s)	32, 199
Tru1I	TTAA	4 cut(s)	57, 99, 176, 605
Tru9I	TTAA	4 cut(s)	57, 99, 176, 605
TscAI	CASTG	3 cut(s)	568, 615, 723
TseI	GCWGC	4 cut(s)	425, 468, 614, 799
TspDTI	ATGAA	3 cut(s)	342, 393, 534
TspRI	CASTG	3 cut(s)	568, 615, 723
XapI	RAATTY	3 cut(s)	178, 443, 758
XceI	RCATGY	2 cut(s)	388, 425
XmnI	GAANNNNTTC	2 cut(s)	484, 729
XspI	CTAG	4 cut(s)	261, 341, 389, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.