Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Reverse (-)

15431854 .. 15436499

Gene Structure 4646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTTCTGGGTTCTGGGCTGGTGGGTGTTTCAGAGAAGAGAAAGCAAGCTAAAGCCTTGTTCCAGAAAAGTTAAGGTGAACTCCGTTTCTCCTCTGGTTGATATGGAAGGAGAGAGTAGCCATAATGACCCCTTGCAATTGATGTCTTTGAATTTTGGTGGGAGTGTTGCGAATCATGTCTCTCGTGCGCCACAACATGATCTGAACCAAAAGATGATTATGGAAGCTGGAAGTAGTGTGAACCAAACTGATGCACTTGCATTACCTTGGATGGTTCAATCCCCGATGCCGGCTCAAAGTTGTGTTGACTTTCTAGCAGAAAGTTCATCATTTCTGCCAAAATCTCCTTATGAAGACATGCTAGAGAGGATTTCTTTATCTGGTAGTGGCATACATGCTGCTGGTGGAGTCTCTGAATTCCATAGAGATTTGTTCTACTGCAGCAGTCTTGGAAAAGCTTCTGGTTCTAAATCAATTGATTTCTCTATGGACATGGATCCTTGGAAGCATCATACTTCATGGACAGATAATTTCACTGGGGCTAGTTTTGACAATGTTTCTCAAGTTGATCCAAAGTTAACACTGGCTGCACCTGGTTTTCCTTCCCGTCCACGTCAAAGTGCTACAAAACAGAAAGCTCTTGTAACTGATCGTGCTCGTAGGATCCGAATTGCTGAAAGGGTAACTGCACTGGAAGAACTGCTTCCACAATCTGTAGAGGGTGGTCAAGAATTTGTACTGGATGATGTCATTGACCATATCAAGTTTTTGCAGCTTCAAATAAAGGATCTAAGTAAAAGCAGATTGGGAGGTGAAACAATTACTGAACCGATGATTTTCCACGAGGGATATGGTCACTACTTCTTACGCCAGCAAATGCTGAGTGAACCTCTTGAAGAGATGATCGGAAAATTGCTGGAGACAAATCCAGCAGCAGCAGACCAGCTGTTAAAGGACAAGGGTCTTTCGATGGTGCCTCTGGGTTTAACCAAGAAATTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

335

Amino Acids

37.21

Weight (kDa)

6.07

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	973
AclWI	GGATC	6 cut(s)	491, 504, 563, 658, 671, 795
AcsI	RAATTY	3 cut(s)	151, 416, 731
AfaI	GTAC	1 cut(s)	738
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	151, 278, 779, 896
AjiI	CACGTC	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	1 cut(s)	983
AluBI	AGCT	6 cut(s)	49, 227, 458, 638, 775, 946
AluI	AGCT	6 cut(s)	49, 227, 458, 638, 775, 946
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	3 cut(s)	184, 415, 914
AlwI	GGATC	6 cut(s)	491, 504, 563, 658, 671, 795
ApeKI	GCWGC	6 cut(s)	398, 441, 587, 772, 932, 935
ApoI	RAATTY	3 cut(s)	151, 416, 731
Asp700I	GAANNNNTTC	3 cut(s)	457, 702, 998
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	88, 824
BamHI	GGATCC	2 cut(s)	496, 663
BanI	GGYRCC	1 cut(s)	973
BauI	CACGAG	2 cut(s)	183, 842
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	6 cut(s)	385, 453, 574, 784, 944, 947
BccI	CCATC	2 cut(s)	265, 964
BciT130I	CCWGG	1 cut(s)	594
BcoDI	GTCTC	3 cut(s)	184, 415, 914
BfaI	CTAG	3 cut(s)	314, 362, 543
BfmI	CTRYAG	2 cut(s)	439, 714
BisI	GCNGC	6 cut(s)	399, 442, 588, 773, 933, 936
BlsI	GCNGC	6 cut(s)	400, 443, 589, 774, 934, 937
Bme1390I	CCNGG	1 cut(s)	594
BmgBI	CACGTC	1 cut(s)	614
BmiI	GGNNCC	3 cut(s)	498, 665, 975
BmrFI	CCNGG	1 cut(s)	594
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	241, 276, 517
BmuI	ACTGGG	1 cut(s)	546
BoxI	GACNNNNGTC	1 cut(s)	960
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	874, 906
BpmI	CTGGAG	1 cut(s)	938
BpuEI	CTTGAG	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	266, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	4 cut(s)	541, 588, 696, 744
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	266, 500
BseGI	GGATG	2 cut(s)	276, 748
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	872
BseNI	ACTGG	4 cut(s)	541, 588, 696, 744
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	6 cut(s)	385, 453, 574, 784, 944, 947
BsgI	GTGCAG	2 cut(s)	573, 672
BshNI	GGYRCC	1 cut(s)	973
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	3 cut(s)	184, 415, 914
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	7 cut(s)	199, 496, 568, 649, 663, 787, 903
BspCNI	CTCAG	1 cut(s)	873
BspLI	GGNNCC	3 cut(s)	498, 665, 975
BspMAI	CTGCAG	1 cut(s)	443
BspPI	GGATC	6 cut(s)	491, 504, 563, 658, 671, 795
BspT107I	GGYRCC	1 cut(s)	973
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	4 cut(s)	541, 588, 696, 744
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	266, 500
BssMI	GATC	7 cut(s)	199, 496, 568, 649, 663, 787, 903
BssSI	CACGAG	2 cut(s)	183, 842
BssT1I	CCWWGG	2 cut(s)	266, 500
Bst2BI	CACGAG	2 cut(s)	183, 842
Bst2UI	CCWGG	1 cut(s)	594
Bst6I	CTCTTC	2 cut(s)	31, 891
BstC8I	GCNNGC	3 cut(s)	47, 291, 872
BstDEI	CTNAG	2 cut(s)	791, 881
BstF5I	GGATG	2 cut(s)	276, 748
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	7 cut(s)	202, 499, 571, 652, 666, 790, 906
BstMAI	GTCTC	3 cut(s)	184, 415, 914
BstMBI	GATC	7 cut(s)	199, 496, 568, 649, 663, 787, 903
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	2 cut(s)	361, 398
BstPAI	GACNNNNGTC	1 cut(s)	960
BstSCI	CCNGG	1 cut(s)	592
BstSFI	CTRYAG	2 cut(s)	439, 714
BstV1I	GCAGC	6 cut(s)	385, 453, 574, 784, 944, 947
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	3 cut(s)	496, 663, 787
BstYI	RGATCY	3 cut(s)	496, 663, 787
BtrI	CACGTC	1 cut(s)	614
BtsCI	GGATG	2 cut(s)	276, 748
BtsIMutI	CAGTG	3 cut(s)	534, 581, 689
Cac8I	GCNNGC	3 cut(s)	47, 291, 872
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	289
CsiI	ACCWGGT	1 cut(s)	592
Csp6I	GTAC	1 cut(s)	737
CviAII	CATG	6 cut(s)	176, 197, 358, 395, 493, 519
CviQI	GTAC	1 cut(s)	737
DdeI	CTNAG	2 cut(s)	791, 881
DpnI	GATC	7 cut(s)	201, 498, 570, 651, 665, 789, 905
DpnII	GATC	7 cut(s)	199, 496, 568, 649, 663, 787, 903
Eam1104I	CTCTTC	2 cut(s)	31, 891
EarI	CTCTTC	2 cut(s)	31, 891
Eco130I	CCWWGG	2 cut(s)	266, 500
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	2 cut(s)	266, 500
ErhI	CCWWGG	2 cut(s)	266, 500
FaeI	CATG	6 cut(s)	179, 200, 361, 398, 496, 522
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FatI	CATG	6 cut(s)	175, 196, 357, 394, 492, 518
Fnu4HI	GCNGC	6 cut(s)	399, 442, 588, 773, 933, 936
FokI	GGATG	2 cut(s)	283, 755
Fsp4HI	GCNGC	6 cut(s)	399, 442, 588, 773, 933, 936
FspBI	CTAG	3 cut(s)	314, 362, 543
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	6 cut(s)	399, 442, 588, 773, 933, 936
GsuI	CTGGAG	1 cut(s)	938
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	6 cut(s)	179, 200, 361, 398, 496, 522
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	2 cut(s)	307, 579
HindII	GTYRAC	2 cut(s)	307, 579
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	2 cut(s)	172, 408
HpaI	GTTAAC	1 cut(s)	579
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	88, 824
Hpy166II	GTNNAC	6 cut(s)	79, 241, 307, 579, 611, 887
Hpy188I	TCNGA	6 cut(s)	33, 204, 415, 668, 908, 1004
Hpy188III	TCNNGA	3 cut(s)	63, 728, 893
Hpy8I	GTNNAC	6 cut(s)	79, 241, 307, 579, 611, 887
HpyAV	CCTTC	2 cut(s)	101, 612
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	7 cut(s)	136, 254, 260, 441, 590, 689, 772
HpyF3I	CTNAG	2 cut(s)	791, 881
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	6 cut(s)	179, 200, 361, 398, 496, 522
HspAI	GCGC	1 cut(s)	188
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
KspAI	GTTAAC	1 cut(s)	579
Kzo9I	GATC	7 cut(s)	199, 496, 568, 649, 663, 787, 903
Lsp1109I	GCAGC	6 cut(s)	385, 453, 574, 784, 944, 947
LweI	GCATC	3 cut(s)	241, 276, 517
MabI	ACCWGGT	1 cut(s)	592
MaeI	CTAG	3 cut(s)	314, 362, 543
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	3 cut(s)	643, 682, 854
MalI	GATC	7 cut(s)	201, 498, 570, 651, 665, 789, 905
MboI	GATC	7 cut(s)	199, 496, 568, 649, 663, 787, 903
MboII	GAAGA	4 cut(s)	48, 365, 707, 908
MfeI	CAATTG	2 cut(s)	137, 474
MflI	RGATCY	3 cut(s)	496, 663, 787
MhlI	GDGCHC	1 cut(s)	658
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	7 cut(s)	102, 360, 712, 803, 838, 900, 987
MroNI	GCCGGC	1 cut(s)	289
MroXI	GAANNNNTTC	3 cut(s)	457, 702, 998
MseI	TTAA	4 cut(s)	72, 578, 950, 986
MspA1I	CMGCKG	1 cut(s)	946
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	594
MunI	CAATTG	2 cut(s)	137, 474
MvaI	CCWGG	1 cut(s)	594
NaeI	GCCGGC	1 cut(s)	291
NdeII	GATC	7 cut(s)	199, 496, 568, 649, 663, 787, 903
NgoMIV	GCCGGC	1 cut(s)	289
NlaIII	CATG	6 cut(s)	179, 200, 361, 398, 496, 522
NlaIV	GGNNCC	3 cut(s)	498, 665, 975
NmuCI	GTSAC	1 cut(s)	854
NspI	RCATGY	2 cut(s)	361, 398
PcsI	WCGNNNNNNNCGW	1 cut(s)	664
PdiI	GCCGGC	1 cut(s)	291
PdmI	GAANNNNTTC	3 cut(s)	457, 702, 998
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	6 cut(s)	400, 443, 589, 774, 934, 937
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PshAI	GACNNNNGTC	1 cut(s)	960
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	3 cut(s)	498, 665, 975
PstI	CTGCAG	1 cut(s)	443
PsuI	RGATCY	3 cut(s)	496, 663, 787
PvuII	CAGCTG	1 cut(s)	946
RsaI	GTAC	1 cut(s)	738
RsaNI	GTAC	1 cut(s)	737
SaqAI	TTAA	4 cut(s)	72, 578, 950, 986
SatI	GCNGC	6 cut(s)	399, 442, 588, 773, 933, 936
Sau3AI	GATC	7 cut(s)	199, 496, 568, 649, 663, 787, 903
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	1 cut(s)	658
SexAI	ACCWGGT	1 cut(s)	592
SfaNI	GCATC	3 cut(s)	241, 276, 517
SfcI	CTRYAG	2 cut(s)	439, 714
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
SspMI	CTAG	3 cut(s)	314, 362, 543
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	2 cut(s)	266, 500
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	1 cut(s)	968
TatI	WGTACW	1 cut(s)	736
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	4 cut(s)	72, 578, 950, 986
Tru9I	TTAA	4 cut(s)	72, 578, 950, 986
TscAI	CASTG	3 cut(s)	541, 588, 696
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	6 cut(s)	398, 441, 587, 772, 932, 935
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	3 cut(s)	315, 366, 507
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	3 cut(s)	541, 588, 696
XapI	RAATTY	3 cut(s)	151, 416, 731
XceI	RCATGY	2 cut(s)	361, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	848
XmnI	GAANNNNTTC	3 cut(s)	457, 702, 998
XspI	CTAG	3 cut(s)	314, 362, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.