Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Forward (+)

21674604 .. 21676679

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAAGGGCAGAGTAGCCTCACCAACCCCATACAAATGCTGTCATTGAGTTTCTGTGGGAATGCTGCGGATGATGTCTCCGAGGCACTGGGCTATGATCTGAACCAACATATTATGATGGAGGCTGGAAGGACTGCAGACCAAACTGATGTTCTTTCTTTACCTTGGTGGATTCAACCCGAAAAGCCATCCCACAATTACGTTGGGTGTCCAGCTGAGAGTTCAGCATTTGTCCCAAAGTCTCCTTGTGAAGATATGTGGGAAAACATTCCTTCATCTGTTGCTAGCATACATGATGTTGGCAGAGTCTCTGAATTCCAACGAGATGGGTTGTACAGTGATCTGGGCAATGCTTGTGGTTCTAAATCAACTGATTTCTCTAGGGATATGGACTCTTCAAAGATGAAACTTCTGAGCCTACATAATGAAGAACTAGTGAATACACAACATCAGCTTCCCGTGCAGTATCATACTTCAAGGACAGATAATCTAAATTGGGATAGCTATGATAGTGTTTCTCAAGTTGATCCAAGAGCAACAATTGACACACCTGGTTATCTTTCCCAACCACATCACAGTGTTTCGAAGCAGAGAACTTTTTCATCTGAATATAATCGCAGGATGCGAATCGGTGAAAGGCTCAGTGCATTGCAAGAACTGCTTCCAGAACCTGCAGAGGGTCGTCAAGTATGTGTACTGGATGATGTAATTGACCGAATTAAGTTTTTGAAGCTTCAGATAAAGGATTTAAGTAGAAGCAGATTGGGAGGTGAACCGATTGCTGAACCCATCATTTTCCACGAGGGTCACTACTTTTGCCACCAGCAGATGCTGAATGAACCTCTCGAAGAAATGATCGGAAAATTACTGGAGGTAGATGTACTGGCAGCAAGCGAGCTGTTGGAGAAGAAAGGTCTTGTGCTGCTGCCAATGGAATACTCCGAAGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

319

Amino Acids

35.74

Weight (kDa)

4.79

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	719
AfaI	GTAC	3 cut(s)	335, 696, 882
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgsI	TTSAA	4 cut(s)	176, 399, 477, 730
AhlI	ACTAGT	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	550
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	6 cut(s)	215, 454, 504, 733, 898, 953
AluI	AGCT	6 cut(s)	215, 454, 504, 733, 898, 953
Alw26I	GTCTC	3 cut(s)	82, 246, 313
AlwI	GGATC	1 cut(s)	521
AlwNI	CAGNNNCTG	2 cut(s)	671, 832
ApeKI	GCWGC	4 cut(s)	65, 887, 922, 925
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	3 cut(s)	267, 598, 660
AsuHPI	GGTGA	3 cut(s)	13, 644, 782
AsuII	TTCGAA	1 cut(s)	584
AsuNHI	GCTAGC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	800
BbvI	GCAGC	4 cut(s)	52, 899, 909, 912
BccI	CCATC	4 cut(s)	112, 196, 320, 797
BciT130I	CCWGG	1 cut(s)	552
BcoDI	GTCTC	3 cut(s)	82, 246, 313
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	3 cut(s)	285, 381, 434
BfmI	CTRYAG	2 cut(s)	135, 672
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	4 cut(s)	66, 888, 923, 926
BlsI	GCNGC	4 cut(s)	67, 889, 924, 927
Bme1390I	CCNGG	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	612, 819
BmtI	GCTAGC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	890
Bpu14I	TTCGAA	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	626
BsaJI	CCNNGG	2 cut(s)	81, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse1I	ACTGG	4 cut(s)	93, 702, 873, 888
Bse3DI	GCAATG	2 cut(s)	355, 647
Bse8I	GATNNNNATC	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	81, 164
BseGI	GGATG	4 cut(s)	76, 188, 627, 706
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMI	GCAATG	2 cut(s)	355, 647
BseMII	CTCAG	3 cut(s)	207, 404, 655
BseNI	ACTGG	4 cut(s)	93, 702, 873, 888
BseXI	GCAGC	4 cut(s)	52, 899, 909, 912
BsgI	GTGCAG	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmAI	GTCTC	3 cut(s)	82, 246, 313
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	67
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	97, 340, 526, 855
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	3 cut(s)	208, 405, 654
BspMAI	CTGCAG	2 cut(s)	139, 676
BspMI	ACCTGC	1 cut(s)	679
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	521
BspT104I	TTCGAA	1 cut(s)	584
BsrDI	GCAATG	2 cut(s)	355, 647
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	4 cut(s)	93, 702, 873, 888
BssECI	CCNNGG	2 cut(s)	81, 164
BssMI	GATC	4 cut(s)	97, 340, 526, 855
BssSI	CACGAG	1 cut(s)	800
BssT1I	CCWWGG	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	800
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	2 cut(s)	338, 578
Bst6I	CTCTTC	1 cut(s)	400
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstAUI	TGTACA	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	286, 892, 896
BstDEI	CTNAG	3 cut(s)	216, 413, 641
BstF5I	GGATG	4 cut(s)	76, 188, 627, 706
BstKTI	GATC	4 cut(s)	100, 343, 529, 858
BstMAI	GTCTC	3 cut(s)	82, 246, 313
BstMBI	GATC	4 cut(s)	97, 340, 526, 855
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 658
BstNI	CCWGG	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	2 cut(s)	135, 672
BstV1I	GCAGC	4 cut(s)	52, 899, 909, 912
BstXI	CCANNNNNNTGG	1 cut(s)	326
BtsCI	GGATG	4 cut(s)	76, 188, 627, 706
BtsIMutI	CAGTG	4 cut(s)	86, 343, 583, 649
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	3 cut(s)	286, 892, 896
CaiI	CAGNNNCTG	2 cut(s)	671, 832
CsiI	ACCWGGT	1 cut(s)	550
Csp6I	GTAC	3 cut(s)	334, 695, 881
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	1 cut(s)	293
CviQI	GTAC	3 cut(s)	334, 695, 881
DdeI	CTNAG	3 cut(s)	216, 413, 641
DpnI	GATC	4 cut(s)	99, 342, 528, 857
DpnII	GATC	4 cut(s)	97, 340, 526, 855
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	296
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	292
Fnu4HI	GCNGC	4 cut(s)	66, 888, 923, 926
FokI	GGATG	4 cut(s)	83, 175, 634, 713
Fsp4HI	GCNGC	4 cut(s)	66, 888, 923, 926
FspBI	CTAG	3 cut(s)	285, 381, 434
GluI	GCNGC	4 cut(s)	66, 888, 923, 926
GsuI	CTGGAG	1 cut(s)	890
Hin1II	CATG	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	5 cut(s)	172, 306, 392, 627, 947
HphI	GGTGA	3 cut(s)	13, 644, 782
Hpy166II	GTNNAC	2 cut(s)	695, 773
Hpy188I	TCNGA	8 cut(s)	82, 102, 313, 414, 607, 738, 860, 943
Hpy188III	TCNNGA	2 cut(s)	665, 845
Hpy8I	GTNNAC	2 cut(s)	695, 773
HpyAV	CCTTC	2 cut(s)	123, 282
HpyCH4III	ACNGT	2 cut(s)	338, 578
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	137, 463, 647, 652, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 658
HpyF3I	CTNAG	3 cut(s)	216, 413, 641
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	296
Kzo9I	GATC	4 cut(s)	97, 340, 526, 855
Lsp1109I	GCAGC	4 cut(s)	52, 899, 909, 912
LweI	GCATC	2 cut(s)	612, 819
MabI	ACCWGGT	1 cut(s)	550
MaeI	CTAG	3 cut(s)	285, 381, 434
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	806
MalI	GATC	4 cut(s)	99, 342, 528, 857
MboI	GATC	4 cut(s)	97, 340, 526, 855
MboII	GAAGA	6 cut(s)	263, 387, 440, 860, 919, 956
MfeI	CAATTG	1 cut(s)	540
MluCI	AATT	7 cut(s)	196, 314, 493, 540, 708, 717, 863
MlyI	GAGTC	2 cut(s)	315, 386
MmeI	TCCRAC	2 cut(s)	343, 882
MnlI	CCTC	8 cut(s)	29, 76, 115, 670, 761, 796, 852, 865
MroXI	GAANNNNTTC	3 cut(s)	267, 598, 660
MseI	TTAA	2 cut(s)	720, 749
MslI	CAYNNNNRTG	2 cut(s)	35, 576
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	460, 658
NdeII	GATC	4 cut(s)	97, 340, 526, 855
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	806
NspV	TTCGAA	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	622
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	3 cut(s)	267, 598, 660
PfeI	GAWTC	3 cut(s)	172, 627, 947
PkrI	GCNGC	4 cut(s)	67, 889, 924, 927
PleI	GAGTC	2 cut(s)	314, 386
PpsI	GAGTC	2 cut(s)	314, 386
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PstI	CTGCAG	2 cut(s)	139, 676
PstNI	CAGNNNCTG	2 cut(s)	671, 832
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	3 cut(s)	335, 696, 882
RsaNI	GTAC	3 cut(s)	334, 695, 881
RseI	CAYNNNNRTG	2 cut(s)	35, 576
SaqAI	TTAA	2 cut(s)	720, 749
SatI	GCNGC	4 cut(s)	66, 888, 923, 926
Sau3AI	GATC	4 cut(s)	97, 340, 526, 855
SchI	GAGTC	2 cut(s)	315, 386
ScrFI	CCNGG	1 cut(s)	552
SexAI	ACCWGGT	1 cut(s)	550
SfaNI	GCATC	2 cut(s)	612, 819
SfcI	CTRYAG	2 cut(s)	135, 672
SfuI	TTCGAA	1 cut(s)	584
SmiMI	CAYNNNNRTG	2 cut(s)	35, 576
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
SpeI	ACTAGT	1 cut(s)	433
Sse9I	AATT	7 cut(s)	196, 314, 493, 540, 708, 717, 863
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	3 cut(s)	285, 381, 434
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	338, 578
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	584, 846
TaqII	GACCGA	1 cut(s)	729
TasI	AATT	7 cut(s)	196, 314, 493, 540, 708, 717, 863
TatI	WGTACW	3 cut(s)	333, 694, 880
TfiI	GAWTC	3 cut(s)	172, 627, 947
Tru1I	TTAA	2 cut(s)	720, 749
Tru9I	TTAA	2 cut(s)	720, 749
TscAI	CASTG	4 cut(s)	93, 343, 583, 649
TseFI	GTSAC	1 cut(s)	806
TseI	GCWGC	4 cut(s)	65, 887, 922, 925
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	5 cut(s)	264, 419, 441, 591, 852
TspRI	CASTG	4 cut(s)	93, 343, 583, 649
XapI	RAATTY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmnI	GAANNNNTTC	3 cut(s)	267, 598, 660
XspI	CTAG	3 cut(s)	285, 381, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.