Prupe.1G199200_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006228
Physical Location & Seq
Reverse (-)
19221041 .. 19221513
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G199200.1

Sequence Viewer

Length: 129 bp
ATGCTGGATGAGATCATCGATTATGTCAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGCGGTGCAGCTGCTGTTGCTCCTCTTGTTGCTGATGTGTCCTCTGAGGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016049 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0021700 GO:0022412 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048609 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0080090 GO:0080147 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

43

Amino Acids

4.49

Weight (kDa)

4.44

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 57
AciI CCGC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
AluBI AGCT 2 cut(s) 40, 83
AluI AGCT 2 cut(s) 40, 83
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 80, 83
ApoI RAATTY 1 cut(s) 29
BbvI GCAGC 2 cut(s) 70, 92
BfuAI ACCTGC 1 cut(s) 57
BisI GCNGC 2 cut(s) 81, 84
BlsI GCNGC 2 cut(s) 82, 85
BpmI CTGGAG 1 cut(s) 20
Bsa29I ATCGAT 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseCI ATCGAT 1 cut(s) 18
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 47, 108
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 70, 92
BsgI GTGCAG 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 49
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 1 cut(s) 75
BspCNI CTCAG 2 cut(s) 48, 109
BspDI ATCGAT 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 57
BssMI GATC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 56, 117
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 72, 89
BstV1I GCAGC 2 cut(s) 70, 92
Bsu15I ATCGAT 1 cut(s) 18
BsuTUI ATCGAT 1 cut(s) 18
BtsCI GGATG 1 cut(s) 13
BveI ACCTGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 86
ClaI ATCGAT 1 cut(s) 18
CviAII CATG 1 cut(s) 61
CviJI RGCY 2 cut(s) 40, 83
CviKI_1 RGCY 2 cut(s) 40, 83
DdeI CTNAG 2 cut(s) 56, 117
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
FaeI CATG 1 cut(s) 64
FaiI YATR 2 cut(s) 24, 62
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 81, 84
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 81, 84
GluI GCNGC 2 cut(s) 81, 84
GsuI CTGGAG 1 cut(s) 20
Hin1II CATG 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 57, 118
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 89
HpyF3I CTNAG 2 cut(s) 56, 117
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 45, 97
LpnPI CCDG 2 cut(s) 50, 52
Lsp1109I GCAGC 2 cut(s) 70, 92
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MluCI AATT 2 cut(s) 29, 124
MnlI CCTC 4 cut(s) 44, 105, 112, 124
MseI TTAA 1 cut(s) 127
MspA1I CMGCKG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 72, 89
NdeII GATC 1 cut(s) 12
NlaIII CATG 1 cut(s) 64
PkrI GCNGC 2 cut(s) 82, 85
PstNI CAGNNNCTG 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 127
SatI GCNGC 2 cut(s) 81, 84
Sau3AI GATC 1 cut(s) 12
SetI ASST 5 cut(s) 42, 54, 71, 85, 123
SgeI CNNG 7 cut(s) 17, 49, 56, 61, 73, 79, 110
Sse9I AATT 2 cut(s) 29, 124
SsiI CCGC 1 cut(s) 75
TaqI TCGA 1 cut(s) 18
TasI AATT 2 cut(s) 29, 124
Tru1I TTAA 1 cut(s) 127
Tru9I TTAA 1 cut(s) 127
TseI GCWGC 2 cut(s) 80, 83
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.