Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Reverse (-)

26078492 .. 26080209

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCCTTATCGCTTCCTTCTCGATACGCTCTCTTCTCCGGCTCGACTCCTGTTCGCATCAGCAGGAGGAGCAACCTCTGCTTCGCCGTCTCCGCCGCACGAGCTTCTCGCCGGGATTCTATATCATTCCCCCAGCCTATCTTCCTCCGCCACGTCATCTCTACCCAGTCGAATTTCGAGATCGATCGAAATTATAGAGCTCATGCGTCTTCTATCGGATCATTCGAGGATAGCTCTTCTTCTAACTTACTAGAAGACGCCAGTTCCGATGGTTTCGATTTGGGCAGCTTTGTTTCTTTCGCGGAAGCGCTTTGTATTTTATCATCCGCCGTGATTTCAGTGGTTCTCGCGGTGAATTACGTGGTGGTTGGTGAAATTGGGAAAAAGGTTTTGTCTTTAGGTTTCGTTGGATTGGTTGGCTCAGTCGCCACTGGTTCTTGGCTTAGACGACGACAATGGATGAGGATTTGCAAAGGCGCGAGAGAAAGTGAGGGGACTAATCTAATTCGAAGGTTGGAGAAACTTGAAAAGGATTTAAAAAGTTCGACTTCTATTGTTAGAGTTCTTTCTAGGCATCTGGAGAAGCTGGGAATTCGGTTTCGGGTCACACGAAAAGCTCTAAAGGAACCCATTTCTGAGACTGCAGCTTTAGCTCAAAAGAATTCTGAGGCTACGAGGGTATTAGTTGCACAGCAAGAGATTCTAGAGAAGGAGCTTGGCGAAATTCAAAAGGTGCTGCTTGCTATGCAGGAACAACAGCGAAAGCAACTCGAGCTTATCCTTACAATCGCAAAGAGCAGCAAGCTGTTTGAGAGCAGTACTAGTAGCAAGCAATCCCCTAGTGAACAACGGAAAAATAAAGCAGAGGAACCCTCAACACCCAAACAGATACTCGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

33.22

Weight (kDa)

9.93

Isoelectric Point (pI)

59.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	302, 350, 479
AciI	CCGC	6 cut(s)	93, 96, 148, 302, 327, 350
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	4 cut(s)	172, 591, 661, 723
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	1 cut(s)	820
AfeI	AGCGCT	1 cut(s)	309
AgsI	TTSAA	3 cut(s)	527, 728, 899
AhlI	ACTAGT	1 cut(s)	821
AjiI	CACGTC	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	94, 632
AlwI	GGATC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	770
Aor51HI	AGCGCT	1 cut(s)	309
ApeKI	GCWGC	4 cut(s)	285, 644, 736, 798
ApoI	RAATTY	4 cut(s)	172, 591, 661, 723
AspLEI	GCGC	2 cut(s)	310, 479
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	364, 383
AsuII	TTCGAA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	201, 261
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	4 cut(s)	297, 656, 723, 810
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	2 cut(s)	71, 314
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	94, 632
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	5 cut(s)	251, 570, 704, 822, 840
BfmI	CTRYAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	311
BisI	GCNGC	5 cut(s)	96, 286, 645, 737, 799
BlsI	GCNGC	5 cut(s)	97, 287, 646, 738, 800
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	770
BmgBI	CACGTC	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	627, 870
BmrFI	CCNGG	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	66, 583
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	2 cut(s)	201, 261
BplI	GAGNNNNNCTC	4 cut(s)	218, 250, 857, 889
BpmI	CTGGAG	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	508
BpuMI	CCSGG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	258
Bse1I	ACTGG	3 cut(s)	166, 261, 436
BseCI	ATCGAT	1 cut(s)	183
BseGI	GGATG	2 cut(s)	323, 465
BseMII	CTCAG	3 cut(s)	435, 627, 657
BseNI	ACTGG	3 cut(s)	166, 261, 436
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	4 cut(s)	297, 656, 723, 810
BseYI	CCCAGC	2 cut(s)	132, 586
Bsh1236I	CGCG	3 cut(s)	302, 350, 479
Bsh1285I	CGRYCG	1 cut(s)	187
BshVI	ATCGAT	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	2 cut(s)	39, 112
BslFI	GGGAC	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	94, 632
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	508
BsoBI	CYCGRG	1 cut(s)	770
Bsp119I	TTCGAA	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	180, 184, 218
BspACI	CCGC	6 cut(s)	93, 96, 148, 302, 327, 350
BspCNI	CTCAG	3 cut(s)	434, 628, 658
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	3 cut(s)	302, 350, 479
BspLI	GGNNCC	2 cut(s)	627, 870
BspMAI	CTGCAG	1 cut(s)	646
BspPI	GGATC	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	241
BspT104I	TTCGAA	1 cut(s)	508
BsrI	ACTGG	3 cut(s)	166, 261, 436
BssMI	GATC	3 cut(s)	180, 184, 218
BssNI	GRCGYC	1 cut(s)	258
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
Bst6I	CTCTTC	2 cut(s)	38, 241
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	508
BstC8I	GCNNGC	3 cut(s)	741, 803, 830
BstDEI	CTNAG	4 cut(s)	421, 443, 636, 666
BstF5I	GGATG	2 cut(s)	323, 465
BstFNI	CGCG	3 cut(s)	302, 350, 479
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	310, 479
BstKTI	GATC	3 cut(s)	183, 187, 221
BstMAI	GTCTC	2 cut(s)	94, 632
BstMBI	GATC	3 cut(s)	180, 184, 218
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	7 cut(s)	69, 78, 92, 101, 650, 745, 772
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	642
BstUI	CGCG	3 cut(s)	302, 350, 479
BstV1I	GCAGC	4 cut(s)	297, 656, 723, 810
BstV2I	GAAGAC	2 cut(s)	201, 261
Bsu15I	ATCGAT	1 cut(s)	183
BsuTUI	ATCGAT	1 cut(s)	183
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	323, 465
BtsIMutI	CAGTG	2 cut(s)	345, 429
Cac8I	GCNNGC	3 cut(s)	741, 803, 830
CfoI	GCGC	2 cut(s)	310, 479
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	2 cut(s)	195, 266
Csp6I	GTAC	1 cut(s)	819
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	1 cut(s)	819
DdeI	CTNAG	4 cut(s)	421, 443, 636, 666
DpnI	GATC	3 cut(s)	182, 186, 220
DpnII	GATC	3 cut(s)	180, 184, 218
DraI	TTTAAA	1 cut(s)	537
Eam1104I	CTCTTC	2 cut(s)	38, 241
EarI	CTCTTC	2 cut(s)	38, 241
EciI	GGCGGA	3 cut(s)	82, 137, 316
Ecl136II	GAGCTC	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	202
Eco47III	AGCGCT	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	200
EcoRI	GAATTC	2 cut(s)	591, 661
EcoT38I	GRGCYC	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	122, 195, 204, 746
FalI	AAGNNNNNCTT	2 cut(s)	532, 564
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	5 cut(s)	96, 286, 645, 737, 799
FokI	GGATG	2 cut(s)	310, 472
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	5 cut(s)	96, 286, 645, 737, 799
FspBI	CTAG	5 cut(s)	251, 570, 704, 822, 840
GlaI	GCGC	2 cut(s)	309, 478
GluI	GCNGC	5 cut(s)	96, 286, 645, 737, 799
GsaI	CCCAGC	2 cut(s)	136, 590
GsuI	CTGGAG	1 cut(s)	599
HaeII	RGCGCY	1 cut(s)	311
HapII	CCGG	2 cut(s)	39, 112
HgaI	GACGC	2 cut(s)	195, 266
HhaI	GCGC	2 cut(s)	310, 479
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	2 cut(s)	308, 477
HinP1I	GCGC	2 cut(s)	308, 477
HinfI	GANTC	3 cut(s)	46, 116, 700
HpaII	CCGG	2 cut(s)	39, 112
HphI	GGTGA	2 cut(s)	364, 383
Hpy166II	GTNNAC	1 cut(s)	845
Hpy188I	TCNGA	4 cut(s)	218, 268, 637, 667
Hpy188III	TCNNGA	4 cut(s)	21, 178, 578, 704
Hpy8I	GTNNAC	1 cut(s)	845
Hpy99I	CGWCG	1 cut(s)	453
HpyAV	CCTTC	3 cut(s)	27, 504, 703
HpyCH4IV	ACGT	2 cut(s)	153, 360
HpyCH4V	TGCA	4 cut(s)	471, 644, 689, 748
HpyF10VI	GCNNNNNNNGC	7 cut(s)	69, 78, 92, 101, 650, 745, 772
HpyF3I	CTNAG	4 cut(s)	421, 443, 636, 666
HpySE526I	ACGT	2 cut(s)	153, 360
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	2 cut(s)	308, 477
Kzo9I	GATC	3 cut(s)	180, 184, 218
LguI	GCTCTTC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	69, 712
Lsp1109I	GCAGC	4 cut(s)	297, 656, 723, 810
LweI	GCATC	2 cut(s)	66, 583
MaeI	CTAG	5 cut(s)	251, 570, 704, 822, 840
MaeII	ACGT	2 cut(s)	153, 360
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	3 cut(s)	182, 186, 220
MboI	GATC	3 cut(s)	180, 184, 218
MboII	GAAGA	6 cut(s)	25, 133, 201, 228, 231, 266
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	8 cut(s)	172, 190, 355, 375, 504, 591, 661, 723
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	2 cut(s)	388, 495
MseI	TTAA	1 cut(s)	536
MspI	CCGG	2 cut(s)	39, 112
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	3 cut(s)	302, 350, 479
MwoI	GCNNNNNNNGC	7 cut(s)	69, 78, 92, 101, 650, 745, 772
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	3 cut(s)	180, 184, 218
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	627, 870
NmuCI	GTSAC	1 cut(s)	604
NspV	TTCGAA	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	770
PciSI	GCTCTTC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	3 cut(s)	222, 264, 607
PfeI	GAWTC	2 cut(s)	116, 700
PkrI	GCNGC	5 cut(s)	97, 287, 646, 738, 800
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	202
PspFI	CCCAGC	2 cut(s)	132, 586
PspN4I	GGNNCC	2 cut(s)	627, 870
PspXI	VCTCGAGB	1 cut(s)	770
PstI	CTGCAG	1 cut(s)	646
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	820
RsaNI	GTAC	1 cut(s)	819
SacI	GAGCTC	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	536
SatI	GCNGC	5 cut(s)	96, 286, 645, 737, 799
Sau3AI	GATC	3 cut(s)	180, 184, 218
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	2 cut(s)	66, 583
SfcI	CTRYAG	1 cut(s)	642
Sfr274I	CTCGAG	1 cut(s)	770
SfuI	TTCGAA	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	770
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SpeI	ACTAGT	1 cut(s)	821
Sse9I	AATT	8 cut(s)	172, 190, 355, 375, 504, 591, 661, 723
SsiI	CCGC	6 cut(s)	93, 96, 148, 302, 327, 350
SspMI	CTAG	5 cut(s)	251, 570, 704, 822, 840
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	111
TaiI	ACGT	2 cut(s)	156, 363
TasI	AATT	8 cut(s)	172, 190, 355, 375, 504, 591, 661, 723
TatI	WGTACW	1 cut(s)	818
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	116, 700
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TscAI	CASTG	2 cut(s)	345, 436
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	4 cut(s)	285, 644, 736, 798
Tsp45I	GTSAC	1 cut(s)	604
TspGWI	ACGGA	1 cut(s)	865
TspRI	CASTG	2 cut(s)	345, 436
XapI	RAATTY	4 cut(s)	172, 591, 661, 723
XbaI	TCTAGA	1 cut(s)	703
XhoI	CTCGAG	1 cut(s)	770
XspI	CTAG	5 cut(s)	251, 570, 704, 822, 840
ZrmI	AGTACT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.