RchiOBHm_Chr2g0112751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011233
Physical Location & Seq
Forward (+)
24808501 .. 24812251
3751 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48617

Sequence Viewer

Length: 900 bp
ATGTCATCATCCGCCTTTCTCCACCTCCTCTTATATTCACCACCTCCTCGCTTCACCCTCTTCTTCACCACCTCCTCCTCCTCTCTCCCCAAAACCCCTAACCTCTTCTCTCTCCCCACCACCACCACCTCCCGCCCACATTTCCCAATCTCTCTCACAAACCCTACCCATCTCACCTCCCTCCGCTCTCCCCTCCGTGCTTACGATTCCGATGCCCCCGTACGGACCTCCGACGACTTCACTGCCGCTTTCAATTTTGACTATTTCCTCTCGATTGCTGAGCTTCTCTGCCTCGCGTCCTCCGCCGTGGTTTCGATCGGTTTCGGGTTGAGCTCGGCGGTGCCGGGGACGAAGAACACGGTTTTTATGGGGAGCAGGGTTTTGGGCGGCGGAGCATTGGCGTTGGTGGCGGCGGTGGGGATTGGGGCGTGGATTCGGAGGCGGCAGTGGAGGAGGGTGAGTAGGGAGACGCTGAAGGGTGGGGTGGAGGTGAATTTGTTTGAGAGGATTGACAAGTTGGAAGAGGATTTGAGAAGCTCGGCGACTATTATAAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATAAGGTTTCGGGTTACCCGAAAGGCTTTGAAGGAGCCCATTGCGGAGACTGCAGCTTTGGCTCAAAAGAACTCTGAGGTCACTCGAGCATTGGCAGCGCAAGAAGACATTCTGGAAAAGGAGCTTGGAGAAACTCAAAAGGTTTTACTGGCAATGCAGGAGCAACAGCAAAAACAACTTGAGCTGATTCTTGCCATTGCAAAGAATGGGAAGCTTTTGGACAACAAACAGACAAATGATCAACCAGAGAGTACCGTTAGAATACGTGATTCAAGTACAGACAATTCAAAACAGAAGGAACCCCATCAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.04

Weight (kDa)

9.67

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 340
AccBSI CCGCTC 1 cut(s) 186
AccII CGCG 1 cut(s) 296
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 3 cut(s) 222, 838, 862
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 4 cut(s) 253, 616, 858, 873
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AluBI AGCT 8 cut(s) 283, 333, 537, 571, 641, 709, 769, 799
AluI AGCT 8 cut(s) 283, 333, 537, 571, 641, 709, 769, 799
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 2 cut(s) 461, 626
Ama87I CYCGRG 1 cut(s) 669
ApeKI GCWGC 3 cut(s) 568, 638, 680
ApoI RAATTY 1 cut(s) 493
ArsI GACNNNNNNTTYG 2 cut(s) 625, 657
Asp700I GAANNNNTTC 1 cut(s) 693
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 6 cut(s) 30, 46, 58, 166, 469, 502
AvaI CYCGRG 1 cut(s) 669
AvaII GGWCC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 2 cut(s) 335, 624
BbsI GAAGAC 1 cut(s) 696
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 3 cut(s) 580, 650, 692
BccI CCATC 2 cut(s) 177, 897
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 4 cut(s) 194, 224, 228, 258
BclI TGATCA 1 cut(s) 823
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 2 cut(s) 461, 626
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 636
BisI GCNGC 7 cut(s) 246, 388, 411, 443, 569, 639, 681
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 7 cut(s) 247, 389, 412, 444, 570, 640, 682
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 669
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 3 cut(s) 342, 621, 885
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 696
Bpu1102I GCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 593, 785
BpuMI CCSGG 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 851
BsaJI CCNNGG 2 cut(s) 306, 344
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 738
Bse3DI GCAATG 3 cut(s) 624, 744, 780
BseDI CCNNGG 2 cut(s) 306, 344
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 3 cut(s) 624, 744, 780
BseMII CTCAG 2 cut(s) 270, 651
BseNI ACTGG 1 cut(s) 738
BseRI GAGGAG 6 cut(s) 17, 36, 64, 67, 70, 466
BseXI GCAGC 3 cut(s) 580, 650, 692
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 318
BshNI GGYRCC 1 cut(s) 340
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 669
BsiSI CCGG 1 cut(s) 344
BsiWI CGTACG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 461, 626
BsmBI CGTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 669
Bsp1286I GDGCHC 2 cut(s) 335, 624
Bsp143I GATC 2 cut(s) 315, 823
Bsp1720I GCTNAGC 1 cut(s) 279
BspCNI CTCAG 2 cut(s) 271, 652
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 3 cut(s) 342, 621, 885
BspMAI CTGCAG 1 cut(s) 640
BspT107I GGYRCC 1 cut(s) 340
BsrBI CCGCTC 1 cut(s) 186
BsrDI GCAATG 3 cut(s) 624, 744, 780
BsrI ACTGG 1 cut(s) 738
BssECI CCNNGG 2 cut(s) 306, 344
BssMI GATC 2 cut(s) 315, 823
Bst4CI ACNGT 2 cut(s) 361, 841
Bst6I CTCTTC 3 cut(s) 65, 110, 516
BstBAI YACGTR 1 cut(s) 851
BstDEI CTNAG 2 cut(s) 279, 660
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 598
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 2 cut(s) 318, 826
BstMAI GTCTC 2 cut(s) 461, 626
BstMBI GATC 2 cut(s) 315, 823
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 5 cut(s) 302, 407, 635, 644, 680
BstPI GGTNACC 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 636
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 580, 650, 692
BstV2I GAAGAC 1 cut(s) 696
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 8
BtsI GCAGTG 2 cut(s) 240, 452
BtsIMutI CAGTG 2 cut(s) 240, 452
CfoI GCGC 1 cut(s) 685
Cfr13I GGNCC 1 cut(s) 225
CseI GACGC 2 cut(s) 285, 478
Csp6I GTAC 3 cut(s) 221, 837, 861
CviQI GTAC 3 cut(s) 221, 837, 861
DdeI CTNAG 2 cut(s) 279, 660
DpnI GATC 2 cut(s) 317, 825
DpnII GATC 2 cut(s) 315, 823
Eam1104I CTCTTC 3 cut(s) 65, 110, 516
EarI CTCTTC 3 cut(s) 65, 110, 516
EciI GGCGGA 2 cut(s) 292, 405
Ecl136II GAGCTC 1 cut(s) 333
Eco24I GRGCYC 2 cut(s) 335, 624
Eco47I GGWCC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 669
Eco91I GGTNACC 1 cut(s) 598
EcoICRI GAGCTC 1 cut(s) 333
EcoO65I GGTNACC 1 cut(s) 598
EcoT38I GRGCYC 2 cut(s) 335, 624
Esp3I CGTCTC 1 cut(s) 461
FaiI YATR 4 cut(s) 34, 368, 551, 898
FaqI GGGAC 1 cut(s) 361
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 7 cut(s) 246, 388, 411, 443, 569, 639, 681
FriOI GRGCYC 2 cut(s) 335, 624
Fsp4HI GCNGC 7 cut(s) 246, 388, 411, 443, 569, 639, 681
FspBI CTAG 1 cut(s) 564
GlaI GCGC 1 cut(s) 684
GluI GCNGC 7 cut(s) 246, 388, 411, 443, 569, 639, 681
HapII CCGG 1 cut(s) 344
HgaI GACGC 2 cut(s) 285, 478
HhaI GCGC 1 cut(s) 685
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 4 cut(s) 206, 433, 772, 854
HpaII CCGG 1 cut(s) 344
HphI GGTGA 6 cut(s) 30, 46, 58, 166, 469, 502
Hpy188I TCNGA 4 cut(s) 211, 232, 438, 661
Hpy188III TCNNGA 2 cut(s) 271, 698
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 469, 610, 874
HpyCH4III ACNGT 2 cut(s) 361, 841
HpyCH4IV ACGT 1 cut(s) 850
HpyCH4V TGCA 3 cut(s) 638, 742, 785
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 407, 635, 644, 680
HpyF3I CTNAG 2 cut(s) 279, 660
HpySE526I ACGT 1 cut(s) 850
HspAI GCGC 1 cut(s) 683
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 2 cut(s) 315, 823
LmnI GCTCC 5 cut(s) 372, 392, 619, 706, 745
LpnPI CCDG 6 cut(s) 357, 361, 683, 719, 728, 843
Lsp1109I GCAGC 3 cut(s) 580, 650, 692
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 564
MaeII ACGT 1 cut(s) 850
MaeIII GTNAC 2 cut(s) 598, 664
MalI GATC 2 cut(s) 317, 825
MbiI CCGCTC 1 cut(s) 186
MboI GATC 2 cut(s) 315, 823
MboII GAAGA 6 cut(s) 52, 55, 97, 364, 533, 701
MhlI GDGCHC 2 cut(s) 335, 624
MluCI AATT 4 cut(s) 253, 493, 578, 868
MmeI TCCRAC 2 cut(s) 255, 498
MroXI GAANNNNTTC 1 cut(s) 693
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 345
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 5 cut(s) 302, 407, 635, 644, 680
NciI CCSGG 1 cut(s) 345
NdeII GATC 2 cut(s) 315, 823
NlaIV GGNNCC 3 cut(s) 342, 621, 885
NmeAIII GCCGAG 2 cut(s) 314, 518
NmuCI GTSAC 1 cut(s) 664
PaeR7I CTCGAG 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 4 cut(s) 206, 433, 772, 854
Pfl23II CGTACG 1 cut(s) 220
PkrI GCNGC 7 cut(s) 247, 389, 412, 444, 570, 640, 682
Ple19I CGATCG 1 cut(s) 318
Ppu21I YACGTR 1 cut(s) 851
PsiI TTATAA 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 335
PspEI GGTNACC 1 cut(s) 598
PspLI CGTACG 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 342, 621, 885
PspPI GGNCC 1 cut(s) 225
PspXI VCTCGAGB 1 cut(s) 669
PstI CTGCAG 1 cut(s) 640
PvuI CGATCG 1 cut(s) 318
RsaI GTAC 3 cut(s) 222, 838, 862
RsaNI GTAC 3 cut(s) 221, 837, 861
SacI GAGCTC 1 cut(s) 335
SatI GCNGC 7 cut(s) 246, 388, 411, 443, 569, 639, 681
Sau3AI GATC 2 cut(s) 315, 823
Sau96I GGNCC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 2 cut(s) 335, 624
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 636
Sfr274I CTCGAG 1 cut(s) 669
SinI GGWCC 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 669
SmlI CTYRAG 3 cut(s) 572, 669, 764
SmoI CTYRAG 3 cut(s) 572, 669, 764
Sse9I AATT 4 cut(s) 253, 493, 578, 868
SspMI CTAG 1 cut(s) 564
SstI GAGCTC 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 361, 841
TaiI ACGT 1 cut(s) 853
TaqI TCGA 3 cut(s) 272, 314, 670
TasI AATT 4 cut(s) 253, 493, 578, 868
TatI WGTACW 1 cut(s) 860
TauI GCSGC 4 cut(s) 248, 390, 413, 445
TfiI GAWTC 4 cut(s) 206, 433, 772, 854
TscAI CASTG 2 cut(s) 247, 452
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 3 cut(s) 568, 638, 680
Tsp45I GTSAC 1 cut(s) 664
TspGWI ACGGA 2 cut(s) 185, 238
TspRI CASTG 2 cut(s) 247, 452
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 493
XhoI CTCGAG 1 cut(s) 669
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.