Rh2DG244300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011233
Physical Location & Seq
Forward (+)
24932191 .. 24934993
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG244300.1

Sequence Viewer

Length: 903 bp
ATGTCATCATCCACCTTTCTCCACCTCCTCTTATATTCACCACCTCCTCGCTTCACCCTCTTCTTCACCACCTCCTCCTCTCTCCCCAAAACCCCTAACCTCTTCTCTCTCCCCACCACCACCACCACCACCTCCCGCTCACATTTCCCAATCTCTCTCACAAACCCTACCCATCTCACCTCCCCCCGCTCTCCCCTCCGTGCTTACGATTCCGATGCCCCCGTACGGACCTCCGACGACTTCACCGCCGCTTTCAATTTTGACCATTTCCTCTCGATTGCTGAGCTTCTCTGCCTCGCGTCCTCCGCCGTGGTTTCGATCGGTTTCGGGTTGAGCTCGGCGGTGCCGGGGACGAAGAACACGGTTTTTATGGGGAGCAAGGTTTTGGGCGGCGGAGCATTGGCGTTGGTGGCGGCGGTGGGGATTGGGGTGTGGATTCGGAGGCGGCAGTGGAGGAGGGTGAGTAGGGAGACGCTGAAGGGTGGGGTGGAGGCGAATTTGTTTGAGAGGATTGACAAGTTGGAAGAGGATTTGAGAAGCTCGGCCACTATTATAAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATAAGGTTTCGGGTTACCCGAAAGGCTTTGAAGGAGCCCATTGCGGAGACTGCAGCTTTGGCTCAAAAGAACTCTGAGGTCACTCGAGCATTGGCAGCGCAAGAAGACATTCTGGAAAAGGAGCTTGGAGAAACTCAAAAGGTTTTACTGGCAATGCAGGAGCAACAGCAAAAACAACTTGAGCTGATTCTTGCCATTGCAAAGAATGGGAAGCTTTTGGACAACAAACAGGCAAATGATCAACCGGAGAGTACCGTTAGAATACGTGATTCAAGTACAGACAATTCAAAACAGAAGGAACCCCATCAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

33.07

Weight (kDa)

9.67

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 343
AccBSI CCGCTC 2 cut(s) 138, 189
AccII CGCG 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 543
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 3 cut(s) 225, 841, 865
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 4 cut(s) 256, 619, 861, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AluBI AGCT 8 cut(s) 286, 336, 540, 574, 644, 712, 772, 802
AluI AGCT 8 cut(s) 286, 336, 540, 574, 644, 712, 772, 802
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 2 cut(s) 464, 629
Ama87I CYCGRG 1 cut(s) 672
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 3 cut(s) 571, 641, 683
ApoI RAATTY 1 cut(s) 496
ArsI GACNNNNNNTTYG 2 cut(s) 628, 660
Asp700I GAANNNNTTC 1 cut(s) 696
AspLEI GCGC 1 cut(s) 688
AspS9I GGNCC 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 6 cut(s) 30, 46, 58, 169, 235, 472
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 2 cut(s) 338, 627
BbsI GAAGAC 1 cut(s) 699
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 583, 653, 695
BccI CCATC 2 cut(s) 180, 900
BceAI ACGGC 1 cut(s) 293
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 464, 629
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 639
BisI GCNGC 7 cut(s) 249, 391, 414, 446, 572, 642, 684
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 7 cut(s) 250, 392, 415, 447, 573, 643, 685
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 3 cut(s) 345, 624, 888
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 596, 788
BpuMI CCSGG 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 854
BsaJI CCNNGG 2 cut(s) 309, 347
BsaWI WCCGGW 1 cut(s) 832
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 741
Bse3DI GCAATG 3 cut(s) 627, 747, 783
BseDI CCNNGG 2 cut(s) 309, 347
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 3 cut(s) 627, 747, 783
BseMII CTCAG 2 cut(s) 273, 654
BseNI ACTGG 1 cut(s) 741
BseRI GAGGAG 5 cut(s) 17, 36, 64, 67, 469
BseXI GCAGC 3 cut(s) 583, 653, 695
Bsh1236I CGCG 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 1 cut(s) 545
BshNI GGYRCC 1 cut(s) 343
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 2 cut(s) 347, 833
BsiWI CGTACG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 464, 629
BsmBI CGTCTC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 672
Bsp1286I GDGCHC 2 cut(s) 338, 627
Bsp143I GATC 2 cut(s) 318, 826
Bsp1720I GCTNAGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 2 cut(s) 274, 655
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 3 cut(s) 345, 624, 888
BspMAI CTGCAG 1 cut(s) 643
BspT107I GGYRCC 1 cut(s) 343
BsrBI CCGCTC 2 cut(s) 138, 189
BsrDI GCAATG 3 cut(s) 627, 747, 783
BsrI ACTGG 1 cut(s) 741
BssECI CCNNGG 2 cut(s) 309, 347
BssMI GATC 2 cut(s) 318, 826
Bst4CI ACNGT 2 cut(s) 364, 844
Bst6I CTCTTC 3 cut(s) 65, 107, 519
BstBAI YACGTR 1 cut(s) 854
BstDEI CTNAG 2 cut(s) 282, 663
BstDSI CCRYGG 1 cut(s) 309
BstEII GGTNACC 1 cut(s) 601
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 299
BstHHI GCGC 1 cut(s) 688
BstKTI GATC 2 cut(s) 321, 829
BstMAI GTCTC 2 cut(s) 464, 629
BstMBI GATC 2 cut(s) 318, 826
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 5 cut(s) 305, 410, 638, 647, 683
BstPI GGTNACC 1 cut(s) 601
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 639
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 3 cut(s) 583, 653, 695
BstV2I GAAGAC 1 cut(s) 699
BsuRI GGCC 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 1 cut(s) 8
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 1 cut(s) 455
CfoI GCGC 1 cut(s) 688
Cfr13I GGNCC 1 cut(s) 228
CseI GACGC 2 cut(s) 288, 481
Csp6I GTAC 3 cut(s) 224, 840, 864
CviQI GTAC 3 cut(s) 224, 840, 864
DdeI CTNAG 2 cut(s) 282, 663
DpnI GATC 2 cut(s) 320, 828
DpnII GATC 2 cut(s) 318, 826
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 3 cut(s) 65, 107, 519
EarI CTCTTC 3 cut(s) 65, 107, 519
EciI GGCGGA 2 cut(s) 295, 408
Ecl136II GAGCTC 1 cut(s) 336
Eco24I GRGCYC 2 cut(s) 338, 627
Eco47I GGWCC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 672
Eco91I GGTNACC 1 cut(s) 601
EcoICRI GAGCTC 1 cut(s) 336
EcoO65I GGTNACC 1 cut(s) 601
EcoT38I GRGCYC 2 cut(s) 338, 627
Esp3I CGTCTC 1 cut(s) 464
FaiI YATR 4 cut(s) 34, 371, 554, 901
FaqI GGGAC 1 cut(s) 364
FauI CCCGC 2 cut(s) 143, 194
FbaI TGATCA 1 cut(s) 826
Fnu4HI GCNGC 7 cut(s) 249, 391, 414, 446, 572, 642, 684
FriOI GRGCYC 2 cut(s) 338, 627
Fsp4HI GCNGC 7 cut(s) 249, 391, 414, 446, 572, 642, 684
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 687
GluI GCNGC 7 cut(s) 249, 391, 414, 446, 572, 642, 684
HaeIII GGCC 1 cut(s) 545
HapII CCGG 2 cut(s) 347, 833
HgaI GACGC 2 cut(s) 288, 481
HhaI GCGC 1 cut(s) 688
Hin6I GCGC 1 cut(s) 686
HinP1I GCGC 1 cut(s) 686
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 4 cut(s) 209, 436, 775, 857
HpaII CCGG 2 cut(s) 347, 833
HphI GGTGA 6 cut(s) 30, 46, 58, 169, 235, 472
Hpy188I TCNGA 4 cut(s) 214, 235, 441, 664
Hpy188III TCNNGA 2 cut(s) 274, 701
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 472, 613, 877
HpyCH4III ACNGT 2 cut(s) 364, 844
HpyCH4IV ACGT 1 cut(s) 853
HpyCH4V TGCA 3 cut(s) 641, 745, 788
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 410, 638, 647, 683
HpyF3I CTNAG 2 cut(s) 282, 663
HpySE526I ACGT 1 cut(s) 853
HspAI GCGC 1 cut(s) 686
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 2 cut(s) 318, 826
LmnI GCTCC 5 cut(s) 375, 395, 622, 709, 748
LpnPI CCDG 6 cut(s) 360, 686, 722, 731, 803, 846
Lsp1109I GCAGC 3 cut(s) 583, 653, 695
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 567
MaeII ACGT 1 cut(s) 853
MaeIII GTNAC 2 cut(s) 601, 667
MalI GATC 2 cut(s) 320, 828
MbiI CCGCTC 2 cut(s) 138, 189
MboI GATC 2 cut(s) 318, 826
MboII GAAGA 6 cut(s) 52, 55, 94, 367, 536, 704
MhlI GDGCHC 2 cut(s) 338, 627
MluCI AATT 4 cut(s) 256, 496, 581, 871
MmeI TCCRAC 2 cut(s) 258, 501
MroXI GAANNNNTTC 1 cut(s) 696
MspI CCGG 2 cut(s) 347, 833
MspR9I CCNGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 5 cut(s) 305, 410, 638, 647, 683
NciI CCSGG 1 cut(s) 348
NdeII GATC 2 cut(s) 318, 826
NlaIV GGNNCC 3 cut(s) 345, 624, 888
NmeAIII GCCGAG 2 cut(s) 317, 521
NmuCI GTSAC 1 cut(s) 667
PaeR7I CTCGAG 1 cut(s) 672
PcsI WCGNNNNNNNCGW 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 4 cut(s) 209, 436, 775, 857
Pfl23II CGTACG 1 cut(s) 223
PkrI GCNGC 7 cut(s) 250, 392, 415, 447, 573, 643, 685
Ple19I CGATCG 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 854
PsiI TTATAA 1 cut(s) 554
Psp124BI GAGCTC 1 cut(s) 338
PspEI GGTNACC 1 cut(s) 601
PspLI CGTACG 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 345, 624, 888
PspPI GGNCC 1 cut(s) 228
PspXI VCTCGAGB 1 cut(s) 672
PstI CTGCAG 1 cut(s) 643
PvuI CGATCG 1 cut(s) 321
RsaI GTAC 3 cut(s) 225, 841, 865
RsaNI GTAC 3 cut(s) 224, 840, 864
SacI GAGCTC 1 cut(s) 338
SatI GCNGC 7 cut(s) 249, 391, 414, 446, 572, 642, 684
Sau3AI GATC 2 cut(s) 318, 826
Sau96I GGNCC 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 2 cut(s) 338, 627
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 639
Sfr274I CTCGAG 1 cut(s) 672
SinI GGWCC 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 672
SmlI CTYRAG 3 cut(s) 575, 672, 767
SmoI CTYRAG 3 cut(s) 575, 672, 767
Sse9I AATT 4 cut(s) 256, 496, 581, 871
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 364, 844
TaiI ACGT 1 cut(s) 856
TaqI TCGA 3 cut(s) 275, 317, 673
TasI AATT 4 cut(s) 256, 496, 581, 871
TatI WGTACW 1 cut(s) 863
TauI GCSGC 4 cut(s) 251, 393, 416, 448
TfiI GAWTC 4 cut(s) 209, 436, 775, 857
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 3 cut(s) 571, 641, 683
Tsp45I GTSAC 1 cut(s) 667
TspGWI ACGGA 2 cut(s) 188, 241
TspRI CASTG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 696
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.