Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Forward (+)

12688955 .. 12692436

Gene Structure 3482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20490.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCATCCTCCACCTCTCACCACCACCACCACCTTCTCCTAAATCCGCCTCCTCGCTCCCTCTTCATCTCCGCCACCAAAACCCCCAACCTCCTCTCTCTCCCAACCACCACCCGCCCACATTTCCCAATCTCAACCTCCCACTCTCCCCCAAACCCCACCCACCTCGCCTCCCTTCGCCACCGCCTCAACGCCTCCTCCTCCTCCGCCGCCGCCGGACCTCCCTCCTCCTCCGCCGCCGAAGAGTTTTCCTTCAATCTGGACTATTTCCTCTCGGTCGCCGAGCTCCTCTGCCTGGCCTCCTCCGCCGTGGTCTCGATCGGTTATGGTCTGAGCTCGGCGGTTCCGGGGTGGAAGAATGCGGCGTTTATCGGGGGGACGGCTTTGGGCGGCGGTGCGGCGGCGTTGGTGATGGCGGTGGGGATTGGGGCGTGGATTCGGAGGCGGCAGTGGAGGAGGGTGAGTAGGGAGACGGTGAAGGGCGGCCTGGAGGTGAATTTGTTTGAGAGGATTGAGAAGTTGGAAGAGGATTTGAGAAGCTCGGTGACGATTGTTAGGGTTTTGTCCAGGCAGCTTGAGAAATTGGGGATTAGGTTTCGGGTTACGAGAAAGGCCTTGAAGGAGCCCATTGCTGAGACTGCAGCTTTGGCTCAAAAGAACTCTGAGGCCACTCGAGCGTTGGCAGCGCAAGAAGACATTCTGGAAAAGGAGCTTGGAGAAACTCAAAAGGTTTTACTGGCATTGCAGGAGCAACAGCAGAAACAATTTGACCTGATTCTTGCCATTGCAAAAAGTGGGAAGCTTTTGGACAACAAACATGCACATGATCAACCAGAGAGTACCATTAGAACACATGATTCAAGTACAGACAATTCAAAACAGAAGGAACCCCAGCAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

32.65

Weight (kDa)

9.6

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	496
AfaI	GTAC	2 cut(s)	841, 865
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	4 cut(s)	256, 619, 861, 876
AjnI	CCWGG	3 cut(s)	294, 486, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	696, 728
AluBI	AGCT	7 cut(s)	286, 336, 540, 574, 644, 712, 802
AluI	AGCT	7 cut(s)	286, 336, 540, 574, 644, 712, 802
Alw21I	GWGCWC	2 cut(s)	288, 338
Alw26I	GTCTC	3 cut(s)	319, 464, 629
Ama87I	CYCGRG	1 cut(s)	672
AoxI	GGCC	4 cut(s)	297, 484, 612, 666
ApeKI	GCWGC	3 cut(s)	571, 641, 683
ApoI	RAATTY	1 cut(s)	496
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	6 cut(s)	11, 421, 472, 487, 505, 556
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	1 cut(s)	218
BanII	GRGCYC	3 cut(s)	288, 338, 627
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	2 cut(s)	288, 338
BbvI	GCAGC	3 cut(s)	583, 653, 695
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	2 cut(s)	293, 396
BciT130I	CCWGG	3 cut(s)	296, 488, 568
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	3 cut(s)	319, 464, 629
BfmI	CTRYAG	1 cut(s)	639
Bme1390I	CCNGG	4 cut(s)	296, 348, 488, 568
Bme18I	GGWCC	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	3 cut(s)	345, 624, 888
BmrFI	CCNGG	4 cut(s)	296, 348, 488, 568
BpiI	GAAGAC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	309, 347
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 182, 185, 212, 448, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	741
Bse3DI	GCAATG	3 cut(s)	627, 740, 783
BseBI	CCWGG	3 cut(s)	296, 488, 568
BseDI	CCNNGG	2 cut(s)	309, 347
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	3 cut(s)	627, 740, 783
BseMII	CTCAG	3 cut(s)	323, 624, 654
BseNI	ACTGG	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	583, 653, 695
BseYI	CCCAGC	1 cut(s)	891
Bsh1285I	CGRYCG	2 cut(s)	279, 321
BshFI	GGCC	4 cut(s)	299, 486, 614, 668
BsiEI	CGRYCG	2 cut(s)	279, 321
BsiHKAI	GWGCWC	2 cut(s)	288, 338
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	216, 347
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	3 cut(s)	319, 464, 629
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	391
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	4 cut(s)	299, 486, 614, 668
Bso31I	GGTCTC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	672
Bsp1286I	GDGCHC	3 cut(s)	288, 338, 627
Bsp143I	GATC	2 cut(s)	318, 826
BspANI	GGCC	4 cut(s)	299, 486, 614, 668
BspCNI	CTCAG	3 cut(s)	324, 625, 655
BspLI	GGNNCC	3 cut(s)	345, 624, 888
BspMAI	CTGCAG	1 cut(s)	643
BspTNI	GGTCTC	1 cut(s)	319
BsrDI	GCAATG	3 cut(s)	627, 740, 783
BsrI	ACTGG	1 cut(s)	741
BssECI	CCNNGG	2 cut(s)	309, 347
BssMI	GATC	2 cut(s)	318, 826
Bst2UI	CCWGG	3 cut(s)	296, 488, 568
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	3 cut(s)	68, 237, 519
BstDEI	CTNAG	3 cut(s)	332, 633, 663
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	5
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	2 cut(s)	321, 829
BstMAI	GTCTC	3 cut(s)	319, 464, 629
BstMBI	GATC	2 cut(s)	318, 826
BstMCI	CGRYCG	2 cut(s)	279, 321
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 638, 647, 674, 683
BstNI	CCWGG	3 cut(s)	296, 488, 568
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	4 cut(s)	294, 346, 486, 566
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	3 cut(s)	583, 653, 695
BstV2I	GAAGAC	1 cut(s)	699
BsuRI	GGCC	4 cut(s)	299, 486, 614, 668
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	455
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	840, 864
CviAII	CATG	3 cut(s)	818, 824, 854
CviQI	GTAC	2 cut(s)	840, 864
DdeI	CTNAG	3 cut(s)	332, 633, 663
DpnI	GATC	2 cut(s)	320, 828
DpnII	GATC	2 cut(s)	318, 826
Eam1104I	CTCTTC	3 cut(s)	68, 237, 519
EarI	CTCTTC	3 cut(s)	68, 237, 519
EciI	GGCGGA	5 cut(s)	36, 61, 196, 223, 295
Ecl136II	GAGCTC	2 cut(s)	286, 336
Eco147I	AGGCCT	1 cut(s)	614
Eco24I	GRGCYC	3 cut(s)	288, 338, 627
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	2 cut(s)	286, 336
Eco88I	CYCGRG	1 cut(s)	672
EcoICRI	GAGCTC	2 cut(s)	286, 336
EcoRII	CCWGG	3 cut(s)	294, 486, 566
EcoT38I	GRGCYC	3 cut(s)	288, 338, 627
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	3 cut(s)	821, 827, 857
FaiI	YATR	5 cut(s)	327, 819, 825, 855, 901
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	3 cut(s)	817, 823, 853
FauI	CCCGC	1 cut(s)	122
FbaI	TGATCA	1 cut(s)	826
FriOI	GRGCYC	3 cut(s)	288, 338, 627
GlaI	GCGC	1 cut(s)	687
GsaI	CCCAGC	1 cut(s)	895
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	4 cut(s)	299, 486, 614, 668
HapII	CCGG	2 cut(s)	216, 347
HhaI	GCGC	1 cut(s)	688
Hin1II	CATG	3 cut(s)	821, 827, 857
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	3 cut(s)	436, 775, 857
HpaII	CCGG	2 cut(s)	216, 347
HphI	GGTGA	6 cut(s)	11, 421, 472, 487, 505, 556
Hpy188I	TCNGA	3 cut(s)	333, 441, 664
Hpy188III	TCNNGA	3 cut(s)	260, 316, 701
HpyAV	CCTTC	6 cut(s)	44, 185, 262, 472, 613, 877
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	4 cut(s)	641, 745, 788, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 638, 647, 674, 683
HpyF3I	CTNAG	3 cut(s)	332, 633, 663
Hsp92II	CATG	3 cut(s)	821, 827, 857
HspAI	GCGC	1 cut(s)	686
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	2 cut(s)	318, 826
LmnI	GCTCC	5 cut(s)	62, 291, 622, 709, 748
Lsp1109I	GCAGC	3 cut(s)	583, 653, 695
MaeIII	GTNAC	2 cut(s)	544, 601
MalI	GATC	2 cut(s)	320, 828
MboI	GATC	2 cut(s)	318, 826
MboII	GAAGA	5 cut(s)	55, 254, 367, 536, 704
MhlI	GDGCHC	3 cut(s)	288, 338, 627
MluCI	AATT	4 cut(s)	496, 581, 764, 871
MmeI	TCCRAC	1 cut(s)	501
MroXI	GAANNNNTTC	1 cut(s)	696
MslI	CAYNNNNRTG	1 cut(s)	822
MspI	CCGG	2 cut(s)	216, 347
MspR9I	CCNGG	4 cut(s)	296, 348, 488, 568
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	296, 488, 568
MwoI	GCNNNNNNNGC	5 cut(s)	305, 638, 647, 674, 683
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	2 cut(s)	318, 826
NlaIII	CATG	3 cut(s)	821, 827, 857
NlaIV	GGNNCC	3 cut(s)	345, 624, 888
NmeAIII	GCCGAG	2 cut(s)	307, 317
NmuCI	GTSAC	1 cut(s)	544
NspI	RCATGY	1 cut(s)	821
PaeR7I	CTCGAG	1 cut(s)	672
PceI	AGGCCT	1 cut(s)	614
PctI	GAATGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	3 cut(s)	436, 775, 857
Ple19I	CGATCG	1 cut(s)	321
Psp124BI	GAGCTC	2 cut(s)	288, 338
Psp6I	CCWGG	3 cut(s)	294, 486, 566
PspFI	CCCAGC	1 cut(s)	891
PspGI	CCWGG	3 cut(s)	294, 486, 566
PspN4I	GGNNCC	3 cut(s)	345, 624, 888
PspPI	GGNCC	1 cut(s)	218
PspXI	VCTCGAGB	1 cut(s)	672
PstI	CTGCAG	1 cut(s)	643
PvuI	CGATCG	1 cut(s)	321
RsaI	GTAC	2 cut(s)	841, 865
RsaNI	GTAC	2 cut(s)	840, 864
RseI	CAYNNNNRTG	1 cut(s)	822
SacI	GAGCTC	2 cut(s)	288, 338
Sau3AI	GATC	2 cut(s)	318, 826
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	4 cut(s)	296, 348, 488, 568
SduI	GDGCHC	3 cut(s)	288, 338, 627
SfcI	CTRYAG	1 cut(s)	639
Sfr274I	CTCGAG	1 cut(s)	672
SinI	GGWCC	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	822
SmlI	CTYRAG	2 cut(s)	575, 672
SmoI	CTYRAG	2 cut(s)	575, 672
Sse9I	AATT	4 cut(s)	496, 581, 764, 871
SseBI	AGGCCT	1 cut(s)	614
SstI	GAGCTC	2 cut(s)	288, 338
StuI	AGGCCT	1 cut(s)	614
StyD4I	CCNGG	4 cut(s)	294, 346, 486, 566
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	2 cut(s)	317, 673
TaqII	GACCGA	1 cut(s)	265
TasI	AATT	4 cut(s)	496, 581, 764, 871
TatI	WGTACW	1 cut(s)	863
TauI	GCSGC	9 cut(s)	212, 215, 239, 365, 393, 401, 404, 448, 486
TfiI	GAWTC	3 cut(s)	436, 775, 857
TscAI	CASTG	1 cut(s)	455
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	3 cut(s)	571, 641, 683
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	1 cut(s)	821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	676
XhoI	CTCGAG	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.