Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Forward (+)

25623397 .. 25626989

Gene Structure 3593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG236800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCATCATCCACCTTTCTCCACCTCCTCTTATATTCACCACCTCCTCGCTTCACCCTCTTCTTCACCACCTCCTCCTCTCTCCCCAAAACCCCTAACCTCTTCTCTCTCCCCACCACCACCACCACCACCTCCCGCTCACATTTCCCAATCTCTCTCACAAACCCTACCCATCTCACCTCCCCCCGCTCTCCCCTCCGTGCTTACGATTCCGATGCCCCCGTACGGACCTCCGACGACTTCACCGCCGCTTTCAATTTTGACCATTTCCTCTCGATTGCTGAGCTTCTCTGCCTCGCGTCCTCCGCCGTGGTTTCGATCGGTTTCGGGTTGAGCTCGGCGGTGCCGGGGACGAAGAACACGGTTTTTATGGGGAGCAAGGTTTTGGGCGGCGGAGCATTGGCGTTGGTGGCGGCGGTGGGGATTGGGGTGTGGATTCGGAGGCGGCAGTGGAGGAGGGTGAGTAGGGAGACGCTGAAGGGTGGGGTGGAGGCGAATTTGTTTGAGAGGATTGACAAGTTGGAAGAGGATTTGAGAAGCTCGGCCACTATTATAAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATAAGGTTTCGGGTTACCCGAAAGGCTTTGAAGGAGCCCATTGCGGAGGTACTGTTAGTATTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.03

Weight (kDa)

10.48

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AccB1I	GGYRCC	1 cut(s)	343
AccBSI	CCGCTC	2 cut(s)	138, 189
AccII	CGCG	1 cut(s)	299
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	2 cut(s)	225, 639
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	256, 619
AluBI	AGCT	4 cut(s)	286, 336, 540, 574
AluI	AGCT	4 cut(s)	286, 336, 540, 574
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	1 cut(s)	571
ApoI	RAATTY	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	6 cut(s)	30, 46, 58, 169, 235, 472
AvaII	GGWCC	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	343
BanII	GRGCYC	2 cut(s)	338, 627
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	293
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	1 cut(s)	567
BisI	GCNGC	5 cut(s)	249, 391, 414, 446, 572
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	5 cut(s)	250, 392, 415, 447, 573
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	345, 624
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	205
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	309, 347
BsaXI	ACNNNNNCTCC	4 cut(s)	448, 478, 626, 656
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	627
BseDI	CCNNGG	2 cut(s)	309, 347
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	5 cut(s)	17, 36, 64, 67, 469
BseXI	GCAGC	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	545
BshNI	GGYRCC	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	347
BsiWI	CGTACG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	464
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	545
Bsp1286I	GDGCHC	2 cut(s)	338, 627
Bsp143I	GATC	1 cut(s)	318
Bsp1720I	GCTNAGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	2 cut(s)	345, 624
BspT107I	GGYRCC	1 cut(s)	343
BsrBI	CCGCTC	2 cut(s)	138, 189
BsrDI	GCAATG	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	309, 347
BssMI	GATC	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	364, 642
Bst6I	CTCTTC	3 cut(s)	65, 107, 519
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	309
BstEII	GGTNACC	1 cut(s)	601
BstF5I	GGATG	1 cut(s)	8
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	1 cut(s)	318
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 410
BstPI	GGTNACC	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	346
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	583
BsuRI	GGCC	1 cut(s)	545
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	228
CseI	GACGC	2 cut(s)	288, 481
Csp6I	GTAC	2 cut(s)	224, 638
CviJI	RGCY	7 cut(s)	286, 336, 540, 545, 574, 614, 625
CviKI_1	RGCY	7 cut(s)	286, 336, 540, 545, 574, 614, 625
CviQI	GTAC	2 cut(s)	224, 638
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	3 cut(s)	65, 107, 519
EarI	CTCTTC	3 cut(s)	65, 107, 519
EciI	GGCGGA	2 cut(s)	295, 408
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	2 cut(s)	338, 627
Eco47I	GGWCC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	336
EcoO65I	GGTNACC	1 cut(s)	601
EcoT38I	GRGCYC	2 cut(s)	338, 627
Esp3I	CGTCTC	1 cut(s)	464
FaiI	YATR	3 cut(s)	34, 371, 554
FaqI	GGGAC	1 cut(s)	364
FauI	CCCGC	2 cut(s)	143, 194
Fnu4HI	GCNGC	5 cut(s)	249, 391, 414, 446, 572
FriOI	GRGCYC	2 cut(s)	338, 627
Fsp4HI	GCNGC	5 cut(s)	249, 391, 414, 446, 572
FspBI	CTAG	1 cut(s)	567
GluI	GCNGC	5 cut(s)	249, 391, 414, 446, 572
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	2 cut(s)	288, 481
HinfI	GANTC	2 cut(s)	209, 436
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	6 cut(s)	30, 46, 58, 169, 235, 472
Hpy188I	TCNGA	3 cut(s)	214, 235, 441
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	472, 613
HpyCH4III	ACNGT	2 cut(s)	364, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 410
HpyF3I	CTNAG	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	3 cut(s)	375, 395, 622
LpnPI	CCDG	2 cut(s)	360, 637
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	567
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	1 cut(s)	320
MbiI	CCGCTC	2 cut(s)	138, 189
MboI	GATC	1 cut(s)	318
MboII	GAAGA	5 cut(s)	52, 55, 94, 367, 536
MhlI	GDGCHC	2 cut(s)	338, 627
MluCI	AATT	3 cut(s)	256, 496, 581
MmeI	TCCRAC	2 cut(s)	258, 501
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	305, 410
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	318
NlaIV	GGNNCC	2 cut(s)	345, 624
NmeAIII	GCCGAG	2 cut(s)	317, 521
PcsI	WCGNNNNNNNCGW	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	209, 436
Pfl23II	CGTACG	1 cut(s)	223
PkrI	GCNGC	5 cut(s)	250, 392, 415, 447, 573
Ple19I	CGATCG	1 cut(s)	321
PsiI	TTATAA	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	338
PspEI	GGTNACC	1 cut(s)	601
PspLI	CGTACG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	345, 624
PspPI	GGNCC	1 cut(s)	228
PvuI	CGATCG	1 cut(s)	321
RsaI	GTAC	2 cut(s)	225, 639
RsaNI	GTAC	2 cut(s)	224, 638
SacI	GAGCTC	1 cut(s)	338
SatI	GCNGC	5 cut(s)	249, 391, 414, 446, 572
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	2 cut(s)	338, 627
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	3 cut(s)	256, 496, 581
SspMI	CTAG	1 cut(s)	567
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	364, 642
TaqI	TCGA	2 cut(s)	275, 317
TasI	AATT	3 cut(s)	256, 496, 581
TauI	GCSGC	4 cut(s)	251, 393, 416, 448
TfiI	GAWTC	2 cut(s)	209, 436
TscAI	CASTG	1 cut(s)	455
TseI	GCWGC	1 cut(s)	571
TspGWI	ACGGA	2 cut(s)	188, 241
TspRI	CASTG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	496
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.