Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Forward (+)

24066994 .. 24070710

Gene Structure 3717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28290.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAGTTCAAAACGAGATGGAGTCCGATTTCATGTTTTGCCTTGGTTTTTGTTAATCACACTCTCCACGCGCCAATTATCGAACCCATCGCCCACTATTTGTCCCTCTCTCTCTCTCTCTCCCTGTGCAACATCAAATGGACCAAAATCCAAAACCCTAACTGAACCCAACCGCACAATCACAGAGATCCACAGCCCCAAAACAATGTCATTCACTTGCCTCCAGCTATTAGTAAATTCACCTCCGCGACCTCGACTCGCCCTCTACATCGCCGCCGCATCTTTCCCCAAAACCCCAGCCATTCTCTCTCTCCCAATCATCAGTCGCCGGCATTTCCCAATCTCAAACAACAGTCCTGTAAATCCCCAAAATTTCAGCTCCCATCAATCTCGTCTTGGAGTGTACAACTCCGATGCAGCTCTGCAACCAAATGACGCCGTCAGTGGTGCCTTCAATTTGGACTATTTCTTGTCGATTGCGGAGTTTTTGTGCATTGCGTCGTCGGCGGTTGTTTCGATTGGTTTCGCGGTGAATTGCGCGGTTTTGAGCTTAAAGAAGACGTCTTTAGTGCCAATGGGGAACTGGGTTTTGGCGTCTGGGGCTGTGGCGTTGGTAATGGCCGTAGGGATTGGGGCGTGGATTCGGCGGCGGCAGTGGAGGCGAATGTGCAGGGAGTCGGTGAAGGGTGGGATGGAGTTGAATTTGTTTGAGAGAATTGAGAAATTGGAGGAGGATTTGCGGAGCTCGACTACAATCATTCGGGTTTTGTCAAGGCAGCTCGAGAAATTGGGGATACGATTTCGGGTTACCCGTAAGGCTTTGAAAGAGCCCATGGCTGAGACTGCAGCTTTGGCTCAAAAGAATTCTGAGGCTACGCGAGCATTAGCAGCACAAGAAGACATTTTGGAAAAGGAGCTTGGAGAAATTCAAAAAGTTTTGCTGGCAATGCAGGAGCAGCAGGAAAAACAACTTGAGCTAATTCTTGCAATTGCGACTTCTGGGAAGCTACGGGAAAGTAGACAGGTACGCGACCAGGAACAAAGTACCACTATAGTACCTGATTCAAGTGAGGAGGATTTAAAACAGAAGGAAGCCCACCAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

40.74

Weight (kDa)

9.51

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	1018
AccII	CGCG	6 cut(s)	70, 247, 527, 539, 877, 1029
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	5 cut(s)	235, 370, 700, 862, 924
AcyI	GRCGYC	3 cut(s)	435, 560, 593
AfaI	GTAC	4 cut(s)	404, 1026, 1045, 1056
AgsI	TTSAA	6 cut(s)	9, 454, 700, 823, 929, 1065
AjnI	CCWGG	1 cut(s)	1032
AjuI	GAANNNNNNNTTGG	4 cut(s)	572, 604, 900, 932
Alw21I	GWGCWC	1 cut(s)	746
Alw26I	GTCTC	1 cut(s)	833
AlwI	GGATC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	779
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	5 cut(s)	416, 775, 845, 887, 955
ApoI	RAATTY	5 cut(s)	235, 370, 700, 862, 924
ArsI	GACNNNNNNTTYG	2 cut(s)	832, 864
AspLEI	GCGC	2 cut(s)	72, 539
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	231, 541, 691
AvaI	CYCGRG	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	140
BaeI	ACNNNNGTAYC	2 cut(s)	1038, 1071
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	746, 831
BbsI	GAAGAC	2 cut(s)	563, 903
Bbv12I	GWGCWC	1 cut(s)	746
BbvI	GCAGC	5 cut(s)	428, 787, 857, 899, 967
BccI	CCATC	4 cut(s)	11, 94, 390, 685
BceAI	ACGGC	2 cut(s)	422, 605
BciT130I	CCWGG	1 cut(s)	1034
BciVI	GTATCC	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	833
BfmI	CTRYAG	2 cut(s)	843, 1050
BfuI	GTATCC	1 cut(s)	786
BisI	GCNGC	9 cut(s)	273, 276, 417, 647, 650, 776, 846, 888, 956
BlsI	GCNGC	9 cut(s)	274, 277, 418, 648, 651, 777, 847, 889, 957
Bme1390I	CCNGG	1 cut(s)	1034
Bme18I	GGWCC	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	1 cut(s)	1034
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	2 cut(s)	287, 403
BmuI	ACTGGG	1 cut(s)	592
BpiI	GAAGAC	2 cut(s)	563, 903
BpmI	CTGGAG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	992
BsaHI	GRCGYC	3 cut(s)	435, 560, 593
BsaJI	CCNNGG	2 cut(s)	41, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	587
Bse3DI	GCAATG	2 cut(s)	492, 951
BseBI	CCWGG	1 cut(s)	1034
BseDI	CCNNGG	2 cut(s)	41, 831
BseGI	GGATG	1 cut(s)	696
BseMI	GCAATG	2 cut(s)	492, 951
BseMII	CTCAG	2 cut(s)	828, 858
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	2 cut(s)	743, 1085
BseXI	GCAGC	5 cut(s)	428, 787, 857, 899, 967
BseYI	CCCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	688
Bsh1236I	CGCG	6 cut(s)	70, 247, 527, 539, 877, 1029
BshFI	GGCC	1 cut(s)	620
BshNI	GGYRCC	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	746
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	833
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	779
Bsp1286I	GDGCHC	2 cut(s)	746, 831
Bsp1407I	TGTACA	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	831
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	2 cut(s)	829, 859
BspFNI	CGCG	6 cut(s)	70, 247, 527, 539, 877, 1029
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	446
BsrDI	GCAATG	2 cut(s)	492, 951
BsrFI	RCCGGY	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	41, 831
BssMI	GATC	1 cut(s)	186
BssNI	GRCGYC	3 cut(s)	435, 560, 593
BssT1I	CCWWGG	2 cut(s)	41, 831
Bst2UI	CCWGG	1 cut(s)	1034
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	3 cut(s)	435, 560, 593
BstAUI	TGTACA	1 cut(s)	402
BstC8I	GCNNGC	3 cut(s)	329, 879, 942
BstDEI	CTNAG	2 cut(s)	837, 867
BstDSI	CCRYGG	1 cut(s)	831
BstEII	GGTNACC	1 cut(s)	805
BstF5I	GGATG	1 cut(s)	696
BstFNI	CGCG	6 cut(s)	70, 247, 527, 539, 877, 1029
BstHHI	GCGC	2 cut(s)	72, 539
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	9 cut(s)	503, 599, 658, 842, 851, 878, 887, 946, 955
BstNI	CCWGG	1 cut(s)	1034
BstPI	GGTNACC	1 cut(s)	805
BstSCI	CCNGG	1 cut(s)	1032
BstSFI	CTRYAG	2 cut(s)	843, 1050
BstUI	CGCG	6 cut(s)	70, 247, 527, 539, 877, 1029
BstV1I	GCAGC	5 cut(s)	428, 787, 857, 899, 967
BstV2I	GAAGAC	2 cut(s)	563, 903
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	786
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	831
BtgZI	GCGATG	2 cut(s)	72, 253
BtsCI	GGATG	1 cut(s)	696
BtsI	GCAGTG	1 cut(s)	659
BtsIMutI	CAGTG	2 cut(s)	448, 659
Cac8I	GCNNGC	3 cut(s)	329, 879, 942
CfoI	GCGC	2 cut(s)	72, 539
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	3 cut(s)	443, 486, 582
Csp6I	GTAC	4 cut(s)	403, 1025, 1044, 1055
CviAII	CATG	2 cut(s)	32, 832
CviQI	GTAC	4 cut(s)	403, 1025, 1044, 1055
DdeI	CTNAG	2 cut(s)	837, 867
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
DraI	TTTAAA	1 cut(s)	1080
EaeI	YGGCCR	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	744
Eco130I	CCWWGG	2 cut(s)	41, 831
Eco24I	GRGCYC	2 cut(s)	746, 831
Eco47I	GGWCC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	744
Eco88I	CYCGRG	1 cut(s)	779
Eco91I	GGTNACC	1 cut(s)	805
EcoICRI	GAGCTC	1 cut(s)	744
EcoO65I	GGTNACC	1 cut(s)	805
EcoRI	GAATTC	1 cut(s)	862
EcoRII	CCWGG	1 cut(s)	1032
EcoT14I	CCWWGG	2 cut(s)	41, 831
EcoT38I	GRGCYC	2 cut(s)	746, 831
ErhI	CCWWGG	2 cut(s)	41, 831
FaeI	CATG	2 cut(s)	35, 835
FaiI	YATR	4 cut(s)	33, 833, 1052, 1105
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	2 cut(s)	31, 831
FblI	GTMKAC	1 cut(s)	1018
Fnu4HI	GCNGC	9 cut(s)	273, 276, 417, 647, 650, 776, 846, 888, 956
FokI	GGATG	1 cut(s)	703
FriOI	GRGCYC	2 cut(s)	746, 831
Fsp4HI	GCNGC	9 cut(s)	273, 276, 417, 647, 650, 776, 846, 888, 956
GlaI	GCGC	2 cut(s)	71, 538
GluI	GCNGC	9 cut(s)	273, 276, 417, 647, 650, 776, 846, 888, 956
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	1 cut(s)	328
HgaI	GACGC	3 cut(s)	443, 486, 582
HhaI	GCGC	2 cut(s)	72, 539
Hin1I	GRCGYC	3 cut(s)	435, 560, 593
Hin1II	CATG	2 cut(s)	35, 835
Hin6I	GCGC	2 cut(s)	70, 537
HinP1I	GCGC	2 cut(s)	70, 537
HinfI	GANTC	5 cut(s)	21, 255, 640, 674, 1061
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	3 cut(s)	231, 541, 691
Hpy166II	GTNNAC	2 cut(s)	403, 1019
Hpy188I	TCNGA	3 cut(s)	26, 412, 868
Hpy188III	TCNNGA	1 cut(s)	781
Hpy8I	GTNNAC	2 cut(s)	403, 1019
Hpy99I	CGWCG	2 cut(s)	502, 505
HpyAV	CCTTC	3 cut(s)	460, 676, 1081
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	8 cut(s)	128, 416, 424, 492, 669, 845, 949, 986
HpyF10VI	GCNNNNNNNGC	9 cut(s)	503, 599, 658, 842, 851, 878, 887, 946, 955
HpyF3I	CTNAG	2 cut(s)	837, 867
HpySE526I	ACGT	1 cut(s)	560
Hsp92I	GRCGYC	3 cut(s)	435, 560, 593
Hsp92II	CATG	2 cut(s)	35, 835
HspAI	GCGC	2 cut(s)	70, 537
KroI	GCCGGC	1 cut(s)	327
KroNI	GCCGGC	1 cut(s)	329
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	4 cut(s)	383, 741, 913, 952
Lsp1109I	GCAGC	5 cut(s)	428, 787, 857, 899, 967
LweI	GCATC	2 cut(s)	287, 403
MaeII	ACGT	1 cut(s)	560
MaeIII	GTNAC	1 cut(s)	805
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	568, 908
MfeI	CAATTG	1 cut(s)	987
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	2 cut(s)	746, 831
MlyI	GAGTC	3 cut(s)	30, 249, 683
MroNI	GCCGGC	1 cut(s)	327
MseI	TTAA	3 cut(s)	53, 551, 1079
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	1034
MunI	CAATTG	1 cut(s)	987
MvaI	CCWGG	1 cut(s)	1034
MvnI	CGCG	6 cut(s)	70, 247, 527, 539, 877, 1029
MwoI	GCNNNNNNNGC	9 cut(s)	503, 599, 658, 842, 851, 878, 887, 946, 955
NaeI	GCCGGC	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	831
NdeII	GATC	1 cut(s)	186
NgoMIV	GCCGGC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	35, 835
NlaIV	GGNNCC	1 cut(s)	448
PaeR7I	CTCGAG	1 cut(s)	779
PcsI	WCGNNNNNNNCGW	1 cut(s)	808
PdiI	GCCGGC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	640, 1061
PflFI	GACNNNGTC	1 cut(s)	437
PkrI	GCNGC	9 cut(s)	274, 277, 418, 648, 651, 777, 847, 889, 957
PleI	GAGTC	3 cut(s)	29, 249, 682
PpsI	GAGTC	3 cut(s)	29, 249, 682
Psp124BI	GAGCTC	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	1032
PspEI	GGTNACC	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	1032
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	186
PsyI	GACNNNGTC	1 cut(s)	437
RsaI	GTAC	4 cut(s)	404, 1026, 1045, 1056
RsaNI	GTAC	4 cut(s)	403, 1025, 1044, 1055
SacI	GAGCTC	1 cut(s)	746
SaqAI	TTAA	3 cut(s)	53, 551, 1079
SatI	GCNGC	9 cut(s)	273, 276, 417, 647, 650, 776, 846, 888, 956
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	3 cut(s)	30, 249, 683
ScrFI	CCNGG	1 cut(s)	1034
SduI	GDGCHC	2 cut(s)	746, 831
SfaNI	GCATC	2 cut(s)	287, 403
SfcI	CTRYAG	2 cut(s)	843, 1050
Sfr274I	CTCGAG	1 cut(s)	779
SinI	GGWCC	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	779
SmlI	CTYRAG	2 cut(s)	779, 971
SmoI	CTYRAG	2 cut(s)	779, 971
SstI	GAGCTC	1 cut(s)	746
StyD4I	CCNGG	1 cut(s)	1032
StyI	CCWWGG	2 cut(s)	41, 831
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	563
TaqI	TCGA	6 cut(s)	80, 253, 473, 515, 746, 780
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	4 cut(s)	275, 278, 649, 652
TfiI	GAWTC	2 cut(s)	640, 1061
Tru1I	TTAA	3 cut(s)	53, 551, 1079
Tru9I	TTAA	3 cut(s)	53, 551, 1079
TscAI	CASTG	2 cut(s)	448, 659
TseI	GCWGC	5 cut(s)	416, 775, 845, 887, 955
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	448, 659
Tth111I	GACNNNGTC	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	5 cut(s)	235, 370, 700, 862, 924
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XhoI	CTCGAG	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	1018
ZraI	GACGTC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.