Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Forward (+)

25053559 .. 25057351

Gene Structure 3793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCATCATCCGCCTTTCTCCACCTCCTCTTATATTCACCACCTCCTCGCTTCACCCTCTTCTTCACCACCTCCTCCTCCTCTCTCCCCAAAACCCCTAACCTCTTCTCTCTCCCCACCACCACCACCTCCCGCCCACATTTCCCAATCTCTCTCACAAACCCTACCCATCTCACCTCCCTCCGCTCTCCCCTCCGTGCTTACGATTCCGATGCCCCCGTACGGACCTCCGACGACTTCACTGCCGCTTTCAATTTTGACTATTTCCTCTCGATTGCTGAGCTTCTCTGCCTCGCGTCCTCCGCCGTGGTTTCGATCGGTTTCGGGTTGAGCTCGGCGGTGCCGGGGACGAAGAACACGGTTTTTATGGGGAGCAGGGTTTTGGGCGGCGGAGCATTGGCGTTGGTGGCGGCGGTGGGGATTGGGGCGTGGATTCGGAGGCGGCAGTGGAGGAGGGTGAGTAGGGAGACGCTGAAGGGTGGGGTGGAGGTGAATTTGTTTGAGAGGATTGACAAGTTGGAAGAGGATTTGAGAAGCTCGGCGACTATTATAAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATAAGGTTTCGGGTTACCCGAAAGGCTTTGAAGGAGCCCATTGCGGAGACTGCAGCTTTGGCTCAAAAGAACTCTGAGGTCACTCGAGCATTGGCAGCGCAAGAAGACATTCTGGAAAAGGAGCTTGGAGAAACTCAAAAGGTTTTACTGGCAATGCAGGTGAGTGTCATCTCTTCCTTTGTGGCAGATAAATACAATGAAGTTGGCTGCTACCTAGGTTTTCCTCAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

29.87

Weight (kDa)

9.54

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AarI	CACCTGC	1 cut(s)	733
Acc36I	ACCTGC	1 cut(s)	733
AccB1I	GGYRCC	1 cut(s)	340
AccBSI	CCGCTC	1 cut(s)	186
AccII	CGCG	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	253, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AluBI	AGCT	6 cut(s)	283, 333, 537, 571, 641, 709
AluI	AGCT	6 cut(s)	283, 333, 537, 571, 641, 709
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	461, 626
Ama87I	CYCGRG	1 cut(s)	669
ApeKI	GCWGC	4 cut(s)	568, 638, 680, 792
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	625, 657
Asp700I	GAANNNNTTC	1 cut(s)	693
AspA2I	CCTAGG	1 cut(s)	799
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	7 cut(s)	30, 46, 58, 166, 469, 502, 757
AvaI	CYCGRG	1 cut(s)	669
AvaII	GGWCC	1 cut(s)	225
AvrII	CCTAGG	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	340
BanII	GRGCYC	2 cut(s)	335, 624
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	4 cut(s)	580, 650, 692, 779
BccI	CCATC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	4 cut(s)	194, 224, 228, 258
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	461, 626
BfaI	CTAG	2 cut(s)	564, 800
BfmI	CTRYAG	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	733
BisI	GCNGC	8 cut(s)	246, 388, 411, 443, 569, 639, 681, 793
BlnI	CCTAGG	1 cut(s)	799
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	8 cut(s)	247, 389, 412, 444, 570, 640, 682, 794
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	669
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	342, 621
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	696
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	306, 344, 799
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	738
Bse3DI	GCAATG	2 cut(s)	624, 744
BseDI	CCNNGG	3 cut(s)	306, 344, 799
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	2 cut(s)	624, 744
BseMII	CTCAG	2 cut(s)	270, 651
BseNI	ACTGG	1 cut(s)	738
BseRI	GAGGAG	6 cut(s)	17, 36, 64, 67, 70, 466
BseXI	GCAGC	4 cut(s)	580, 650, 692, 779
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	340
BsiEI	CGRYCG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	669
BsiSI	CCGG	1 cut(s)	344
BsiWI	CGTACG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	2 cut(s)	461, 626
BsmBI	CGTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	361
BsoBI	CYCGRG	1 cut(s)	669
Bsp1286I	GDGCHC	2 cut(s)	335, 624
Bsp143I	GATC	1 cut(s)	315
Bsp1720I	GCTNAGC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	271, 652
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	342, 621
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	733
BspT107I	GGYRCC	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	186
BsrDI	GCAATG	2 cut(s)	624, 744
BsrI	ACTGG	1 cut(s)	738
BssECI	CCNNGG	3 cut(s)	306, 344, 799
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	799
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	4 cut(s)	65, 110, 516, 763
BstDEI	CTNAG	3 cut(s)	279, 660, 810
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	8
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	2 cut(s)	461, 626
BstMBI	GATC	1 cut(s)	315
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 407, 635, 644, 680
BstPI	GGTNACC	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	636
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	4 cut(s)	580, 650, 692, 779
BstV2I	GAAGAC	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	8
BtsI	GCAGTG	2 cut(s)	240, 452
BtsIMutI	CAGTG	2 cut(s)	240, 452
BveI	ACCTGC	1 cut(s)	733
CfoI	GCGC	1 cut(s)	685
Cfr13I	GGNCC	1 cut(s)	225
CseI	GACGC	2 cut(s)	285, 478
Csp6I	GTAC	1 cut(s)	221
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	3 cut(s)	279, 660, 810
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eam1104I	CTCTTC	4 cut(s)	65, 110, 516, 763
EarI	CTCTTC	4 cut(s)	65, 110, 516, 763
EciI	GGCGGA	2 cut(s)	292, 405
Ecl136II	GAGCTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	799
Eco24I	GRGCYC	2 cut(s)	335, 624
Eco47I	GGWCC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	669
Eco91I	GGTNACC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	333
EcoO65I	GGTNACC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	799
EcoT38I	GRGCYC	2 cut(s)	335, 624
ErhI	CCWWGG	1 cut(s)	799
Esp3I	CGTCTC	1 cut(s)	461
FaiI	YATR	3 cut(s)	34, 368, 551
FaqI	GGGAC	1 cut(s)	361
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	8 cut(s)	246, 388, 411, 443, 569, 639, 681, 793
FriOI	GRGCYC	2 cut(s)	335, 624
Fsp4HI	GCNGC	8 cut(s)	246, 388, 411, 443, 569, 639, 681, 793
FspBI	CTAG	2 cut(s)	564, 800
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	8 cut(s)	246, 388, 411, 443, 569, 639, 681, 793
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	2 cut(s)	285, 478
HhaI	GCGC	1 cut(s)	685
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HinfI	GANTC	2 cut(s)	206, 433
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	7 cut(s)	30, 46, 58, 166, 469, 502, 757
Hpy188I	TCNGA	4 cut(s)	211, 232, 438, 661
Hpy188III	TCNNGA	2 cut(s)	271, 698
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	469, 610
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	2 cut(s)	638, 742
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 407, 635, 644, 680
HpyF3I	CTNAG	3 cut(s)	279, 660, 810
HspAI	GCGC	1 cut(s)	683
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	4 cut(s)	372, 392, 619, 706
LpnPI	CCDG	5 cut(s)	357, 361, 683, 719, 728
Lsp1109I	GCAGC	4 cut(s)	580, 650, 692, 779
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	564, 800
MaeIII	GTNAC	2 cut(s)	598, 664
MalI	GATC	1 cut(s)	317
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	1 cut(s)	315
MboII	GAAGA	7 cut(s)	52, 55, 97, 364, 533, 701, 750
MhlI	GDGCHC	2 cut(s)	335, 624
MluCI	AATT	3 cut(s)	253, 493, 578
MmeI	TCCRAC	2 cut(s)	255, 498
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	1 cut(s)	817
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	5 cut(s)	302, 407, 635, 644, 680
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	315
NlaIV	GGNNCC	2 cut(s)	342, 621
NmeAIII	GCCGAG	2 cut(s)	314, 518
NmuCI	GTSAC	1 cut(s)	664
PaeR7I	CTCGAG	1 cut(s)	669
PaqCI	CACCTGC	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	206, 433
Pfl23II	CGTACG	1 cut(s)	220
PkrI	GCNGC	8 cut(s)	247, 389, 412, 444, 570, 640, 682, 794
Ple19I	CGATCG	1 cut(s)	318
PsiI	TTATAA	1 cut(s)	551
Psp124BI	GAGCTC	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	598
PspLI	CGTACG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	342, 621
PspPI	GGNCC	1 cut(s)	225
PspXI	VCTCGAGB	1 cut(s)	669
PstI	CTGCAG	1 cut(s)	640
PvuI	CGATCG	1 cut(s)	318
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	817
SatI	GCNGC	8 cut(s)	246, 388, 411, 443, 569, 639, 681, 793
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	2 cut(s)	335, 624
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	636
Sfr274I	CTCGAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	225
SlaI	CTCGAG	1 cut(s)	669
SmlI	CTYRAG	2 cut(s)	572, 669
SmoI	CTYRAG	2 cut(s)	572, 669
Sse9I	AATT	3 cut(s)	253, 493, 578
SspMI	CTAG	2 cut(s)	564, 800
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	799
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	3 cut(s)	272, 314, 670
TasI	AATT	3 cut(s)	253, 493, 578
TauI	GCSGC	4 cut(s)	248, 390, 413, 445
TfiI	GAWTC	2 cut(s)	206, 433
Tru1I	TTAA	1 cut(s)	817
Tru9I	TTAA	1 cut(s)	817
TscAI	CASTG	2 cut(s)	247, 452
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	4 cut(s)	568, 638, 680, 792
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	1 cut(s)	798
TspGWI	ACGGA	2 cut(s)	185, 238
TspRI	CASTG	2 cut(s)	247, 452
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	669
XmaJI	CCTAGG	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	2 cut(s)	564, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.