Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001708.1

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Reverse (-)

137487 .. 140311

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001708.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgtcatcatccacctttctccacctcctcttatattcaccacctcctcgcttctccctcttcttcaccacctcctcctcctcctcctcctctctccccaaaacccctaacctcttctctctccccaccaccaccacctcccgcccacatttcccaatctctctcgcaaaccctacccatctcacctccccccgctctcccctccgtgcttacgattccgatgcccccgtacggacctccgacgacttcaccgccgctttcaattttgactatttcctctcgattgctgagtttctctgcctcgcgtcctccgccgtggtttcgatcggtttcgggttgagctcggcggtgccggggacgaagaacacggtttttatggggagcagggttttgggcggcggagcattggcgttggtggcggcggtggggattggggtgtggattcggaggcggcagtggaggagggtgagtagggagacgctgaagggtggggtggaggtgaatttgtttgagaggattgacaagttggaagaggatttgagaagctcggcgactattataagggttttgtctaggcagcttgagaaattggggataaggtttcgggttacccgaaaggctttgaaggagcccattgcggagactgcagctttggctcaaaagaactctgaggtcactcgagcattggcagcgcaagaagacattctggaaaaggaacttggagaaactcaaaaggttttactggcaatgcaggagcaacagcaaaaacaactggagctgattcttgccattgcaaagaatgggaagcttttggacaacaaacaggcaaatgatcaaccggagagtaccgttagaatacgtgattcaagtacagacaattcaaaacagaaggaaccccatcaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.3

Weight (kDa)

9.67

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	195
AccII	CGCG	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	3 cut(s)	231, 847, 871
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	4 cut(s)	262, 625, 867, 882
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AluBI	AGCT	6 cut(s)	342, 546, 580, 650, 778, 808
AluI	AGCT	6 cut(s)	342, 546, 580, 650, 778, 808
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	2 cut(s)	470, 635
Ama87I	CYCGRG	1 cut(s)	678
ApeKI	GCWGC	3 cut(s)	577, 647, 689
ApoI	RAATTY	1 cut(s)	502
ArsI	GACNNNNNNTTYG	2 cut(s)	634, 666
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	6 cut(s)	30, 58, 175, 241, 478, 511
AvaI	CYCGRG	1 cut(s)	678
AvaII	GGWCC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	2 cut(s)	344, 633
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	3 cut(s)	589, 659, 701
BccI	CCATC	2 cut(s)	186, 906
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	470, 635
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	7 cut(s)	255, 397, 420, 452, 578, 648, 690
BlsI	GCNGC	7 cut(s)	256, 398, 421, 453, 579, 649, 691
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	678
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	3 cut(s)	351, 630, 894
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	705
BpmI	CTGGAG	1 cut(s)	794
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	860
BsaJI	CCNNGG	2 cut(s)	315, 353
BsaWI	WCCGGW	1 cut(s)	838
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	2 cut(s)	747, 777
Bse3DI	GCAATG	3 cut(s)	633, 753, 789
BseDI	CCNNGG	2 cut(s)	315, 353
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	3 cut(s)	633, 753, 789
BseMII	CTCAG	2 cut(s)	279, 660
BseNI	ACTGG	2 cut(s)	747, 777
BseRI	GAGGAG	9 cut(s)	17, 36, 64, 67, 70, 73, 76, 79, 475
BseXI	GCAGC	3 cut(s)	589, 659, 701
Bsh1236I	CGCG	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	678
BsiSI	CCGG	2 cut(s)	353, 839
BsiWI	CGTACG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	470, 635
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	678
Bsp1286I	GDGCHC	2 cut(s)	344, 633
Bsp143I	GATC	2 cut(s)	324, 832
BspCNI	CTCAG	2 cut(s)	280, 661
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	3 cut(s)	351, 630, 894
BspMAI	CTGCAG	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	349
BsrBI	CCGCTC	1 cut(s)	195
BsrDI	GCAATG	3 cut(s)	633, 753, 789
BsrI	ACTGG	2 cut(s)	747, 777
BssECI	CCNNGG	2 cut(s)	315, 353
BssMI	GATC	2 cut(s)	324, 832
Bst4CI	ACNGT	2 cut(s)	370, 850
Bst6I	CTCTTC	3 cut(s)	65, 119, 525
BstBAI	YACGTR	1 cut(s)	860
BstDEI	CTNAG	2 cut(s)	288, 669
BstDSI	CCRYGG	1 cut(s)	315
BstEII	GGTNACC	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	8
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	2 cut(s)	327, 835
BstMAI	GTCTC	2 cut(s)	470, 635
BstMBI	GATC	2 cut(s)	324, 832
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	5 cut(s)	311, 416, 644, 653, 689
BstPI	GGTNACC	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	3 cut(s)	589, 659, 701
BstV2I	GAAGAC	1 cut(s)	705
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	694
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	2 cut(s)	294, 487
Csp6I	GTAC	3 cut(s)	230, 846, 870
CviJI	RGCY	9 cut(s)	342, 546, 580, 620, 631, 650, 656, 778, 808
CviKI_1	RGCY	9 cut(s)	342, 546, 580, 620, 631, 650, 656, 778, 808
CviQI	GTAC	3 cut(s)	230, 846, 870
DdeI	CTNAG	2 cut(s)	288, 669
DpnI	GATC	2 cut(s)	326, 834
DpnII	GATC	2 cut(s)	324, 832
Eam1104I	CTCTTC	3 cut(s)	65, 119, 525
EarI	CTCTTC	3 cut(s)	65, 119, 525
EciI	GGCGGA	2 cut(s)	301, 414
Ecl136II	GAGCTC	1 cut(s)	342
Eco24I	GRGCYC	2 cut(s)	344, 633
Eco47I	GGWCC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	678
Eco91I	GGTNACC	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	342
EcoO65I	GGTNACC	1 cut(s)	607
EcoT38I	GRGCYC	2 cut(s)	344, 633
Esp3I	CGTCTC	1 cut(s)	470
FaiI	YATR	4 cut(s)	34, 377, 560, 907
FaqI	GGGAC	1 cut(s)	370
FauI	CCCGC	2 cut(s)	149, 200
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	7 cut(s)	255, 397, 420, 452, 578, 648, 690
FriOI	GRGCYC	2 cut(s)	344, 633
Fsp4HI	GCNGC	7 cut(s)	255, 397, 420, 452, 578, 648, 690
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	7 cut(s)	255, 397, 420, 452, 578, 648, 690
GsuI	CTGGAG	1 cut(s)	794
HapII	CCGG	2 cut(s)	353, 839
HgaI	GACGC	2 cut(s)	294, 487
HhaI	GCGC	1 cut(s)	694
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	4 cut(s)	215, 442, 781, 863
HpaII	CCGG	2 cut(s)	353, 839
HphI	GGTGA	6 cut(s)	30, 58, 175, 241, 478, 511
Hpy188I	TCNGA	4 cut(s)	220, 241, 447, 670
Hpy188III	TCNNGA	2 cut(s)	280, 707
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	3 cut(s)	478, 619, 883
HpyCH4III	ACNGT	2 cut(s)	370, 850
HpyCH4IV	ACGT	1 cut(s)	859
HpyCH4V	TGCA	3 cut(s)	647, 751, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	311, 416, 644, 653, 689
HpyF3I	CTNAG	2 cut(s)	288, 669
HpySE526I	ACGT	1 cut(s)	859
HspAI	GCGC	1 cut(s)	692
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	2 cut(s)	324, 832
LmnI	GCTCC	5 cut(s)	381, 401, 628, 754, 775
LpnPI	CCDG	8 cut(s)	366, 370, 692, 728, 737, 758, 809, 852
Lsp1109I	GCAGC	3 cut(s)	589, 659, 701
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	2 cut(s)	607, 673
MalI	GATC	2 cut(s)	326, 834
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	2 cut(s)	324, 832
MboII	GAAGA	6 cut(s)	52, 55, 106, 373, 542, 710
MhlI	GDGCHC	2 cut(s)	344, 633
MluCI	AATT	4 cut(s)	262, 502, 587, 877
MmeI	TCCRAC	2 cut(s)	264, 507
MroXI	GAANNNNTTC	1 cut(s)	702
MspI	CCGG	2 cut(s)	353, 839
MspR9I	CCNGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	5 cut(s)	311, 416, 644, 653, 689
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	2 cut(s)	324, 832
NlaIV	GGNNCC	3 cut(s)	351, 630, 894
NmeAIII	GCCGAG	2 cut(s)	323, 527
NmuCI	GTSAC	1 cut(s)	673
PaeR7I	CTCGAG	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	4 cut(s)	215, 442, 781, 863
Pfl23II	CGTACG	1 cut(s)	229
PkrI	GCNGC	7 cut(s)	256, 398, 421, 453, 579, 649, 691
Ple19I	CGATCG	1 cut(s)	327
Ppu21I	YACGTR	1 cut(s)	860
PsiI	TTATAA	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	344
PspEI	GGTNACC	1 cut(s)	607
PspLI	CGTACG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	351, 630, 894
PspPI	GGNCC	1 cut(s)	234
PspXI	VCTCGAGB	1 cut(s)	678
PstI	CTGCAG	1 cut(s)	649
PvuI	CGATCG	1 cut(s)	327
RsaI	GTAC	3 cut(s)	231, 847, 871
RsaNI	GTAC	3 cut(s)	230, 846, 870
SacI	GAGCTC	1 cut(s)	344
SatI	GCNGC	7 cut(s)	255, 397, 420, 452, 578, 648, 690
Sau3AI	GATC	2 cut(s)	324, 832
Sau96I	GGNCC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	2 cut(s)	344, 633
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	645
Sfr274I	CTCGAG	1 cut(s)	678
SinI	GGWCC	1 cut(s)	234
SlaI	CTCGAG	1 cut(s)	678
SmlI	CTYRAG	2 cut(s)	581, 678
SmoI	CTYRAG	2 cut(s)	581, 678
Sse9I	AATT	4 cut(s)	262, 502, 587, 877
SspMI	CTAG	1 cut(s)	573
SstI	GAGCTC	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	2 cut(s)	370, 850
TaiI	ACGT	1 cut(s)	862
TaqI	TCGA	3 cut(s)	281, 323, 679
TasI	AATT	4 cut(s)	262, 502, 587, 877
TatI	WGTACW	1 cut(s)	869
TauI	GCSGC	4 cut(s)	257, 399, 422, 454
TfiI	GAWTC	4 cut(s)	215, 442, 781, 863
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	3 cut(s)	577, 647, 689
Tsp45I	GTSAC	1 cut(s)	673
TspGWI	ACGGA	2 cut(s)	194, 247
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	1 cut(s)	502
XhoI	CTCGAG	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.