Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Reverse (-)

19815223 .. 19819986

Gene Structure 4764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G191100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCATTCACTTGTCATCAGCTATTCATAAATTCACCTCCTCGTTTCACCCTTTACATCACCACCTCTCTTCCCAAAACCCCCGCCCTTCTCTCTCTCCCAATCACCTCTCGCCCACATTTCCCAATCTCAAACCACAGCCTTCCAAACCCTCACAATTCAACCTCCCTCAGCTCTCATCACTCTCGTCTCAGAGTATACGAATCCGATGGCACTCTACAGTCAAACGACGTCGTCAACGGTGCTTTCAATTTGGACTATTTTCTTACGGTTGCCGAGTTCTTGTGCCTTGCATCGTCGGCAATCGTTTCGGTTGGTTTTGCATTGAATTGCGCGGTTTTGAGCTTAAAGAAGACGGCTTTAGTGGCAATGGGGAACAGCGTTTTGGCGTCTGGGGCTGTGGCTTTGGTAATGGCGGTCGGAATTGGGGCGTGGATTCGGATGCGGCAGTGGAGGCGGATATGTAGGGAGTCAGTGAAGGGTGGGCTGGAAGTGAATTTGTTTGAGAGAATTGAGAAGCTGGAGGAAGATTTGAGGAGCTCGGCCACAATCATTCGGGTTTTGTCGAGGCAGCTTGAGAAGTTGGGGATAAGGTTTCGGGTTACCCGCAAGGCTTTGAAGGAGCCAATTGCTGAGACTGCAGCTTTGGCTCAAAAAAATTCTGAGGCCACTCGAGCATTAGCAGTGCAAGAAGACAATCTGGAAAAGGAGCTTGGAGAAATTCAGAAGGTTTTGTTGGCTATGCAGGAGCAGCAGCAAAAACAACTTGAGCTGATTCTTGCGATTGCGACTTCTGGGAAGCTTCGGGAAAGTAGACAGGTACGCGATCAAGAACAAAGTACCACTATAATACGTGATTCAAGTGAGGAGGATTCAAAACAGAAGGAAGCCCACCAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.35

Weight (kDa)

9.06

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AccI	GTMKAC	2 cut(s)	198, 814
AccII	CGCG	2 cut(s)	335, 825
AciI	CCGC	6 cut(s)	84, 335, 416, 445, 457, 607
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	4 cut(s)	31, 496, 658, 720
AcyI	GRCGYC	2 cut(s)	231, 389
AfaI	GTAC	2 cut(s)	822, 841
AgsI	TTSAA	6 cut(s)	162, 250, 328, 619, 861, 876
AjuI	GAANNNNNNNTTGG	6 cut(s)	368, 400, 696, 719, 728, 751
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	2 cut(s)	194, 629
Ama87I	CYCGRG	1 cut(s)	672
AoxI	GGCC	2 cut(s)	543, 666
ApeKI	GCWGC	4 cut(s)	571, 641, 751, 754
ApoI	RAATTY	4 cut(s)	31, 496, 658, 720
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
AspLEI	GCGC	1 cut(s)	335
AsuHPI	GGTGA	4 cut(s)	27, 40, 52, 97
AvaI	CYCGRG	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	542
BbsI	GAAGAC	2 cut(s)	359, 699
Bbv12I	GWGCWC	1 cut(s)	542
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	4 cut(s)	583, 653, 763, 766
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BcoDI	GTCTC	2 cut(s)	194, 629
BfmI	CTRYAG	2 cut(s)	218, 639
BisI	GCNGC	5 cut(s)	446, 572, 642, 752, 755
BlsI	GCNGC	5 cut(s)	447, 573, 643, 753, 756
BmeT110I	CYCGRG	1 cut(s)	672
BmiI	GGNNCC	1 cut(s)	624
BmsI	GCATC	2 cut(s)	302, 432
BpiI	GAAGAC	2 cut(s)	359, 699
BpmI	CTGGAG	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	596, 788
BsaAI	YACGTR	1 cut(s)	854
BsaHI	GRCGYC	2 cut(s)	231, 389
Bse3DI	GCAATG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	447
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	4 cut(s)	184, 205, 624, 654
BseRI	GAGGAG	3 cut(s)	30, 550, 881
BseXI	GCAGC	4 cut(s)	583, 653, 763, 766
Bsh1236I	CGCG	2 cut(s)	335, 825
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	545, 668
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	672
BsmAI	GTCTC	2 cut(s)	194, 629
BsmBI	CGTCTC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	545, 668
BsoBI	CYCGRG	1 cut(s)	672
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	1 cut(s)	826
BspACI	CCGC	6 cut(s)	84, 335, 416, 445, 457, 607
BspANI	GGCC	2 cut(s)	545, 668
BspCNI	CTCAG	4 cut(s)	183, 204, 625, 655
BspFNI	CGCG	2 cut(s)	335, 825
BspLI	GGNNCC	1 cut(s)	624
BspMAI	CTGCAG	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	375
BssMI	GATC	1 cut(s)	826
BssNAI	GTATAC	1 cut(s)	199
BssNI	GRCGYC	2 cut(s)	231, 389
Bst1107I	GTATAC	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	222, 242, 271
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	2 cut(s)	231, 389
BstBAI	YACGTR	1 cut(s)	854
BstDEI	CTNAG	4 cut(s)	170, 191, 633, 663
BstEII	GGTNACC	1 cut(s)	601
BstF5I	GGATG	1 cut(s)	447
BstFNI	CGCG	2 cut(s)	335, 825
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	1 cut(s)	829
BstMAI	GTCTC	2 cut(s)	194, 629
BstMBI	GATC	1 cut(s)	826
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	8 cut(s)	299, 365, 395, 454, 638, 647, 674, 751
BstPI	GGTNACC	1 cut(s)	601
BstSFI	CTRYAG	2 cut(s)	218, 639
BstUI	CGCG	2 cut(s)	335, 825
BstV1I	GCAGC	4 cut(s)	583, 653, 763, 766
BstV2I	GAAGAC	2 cut(s)	359, 699
BstZ17I	GTATAC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	545, 668
BtsCI	GGATG	1 cut(s)	447
BtsI	GCAGTG	2 cut(s)	455, 690
BtsIMutI	CAGTG	3 cut(s)	455, 480, 690
CfoI	GCGC	1 cut(s)	335
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	821, 840
CviQI	GTAC	2 cut(s)	821, 840
DdeI	CTNAG	4 cut(s)	170, 191, 633, 663
DpnI	GATC	1 cut(s)	828
DpnII	GATC	1 cut(s)	826
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	472
Ecl136II	GAGCTC	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	672
Eco91I	GGTNACC	1 cut(s)	601
EcoICRI	GAGCTC	1 cut(s)	540
EcoO65I	GGTNACC	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	542
Esp3I	CGTCTC	1 cut(s)	194
FaiI	YATR	6 cut(s)	29, 199, 463, 743, 848, 901
FauI	CCCGC	2 cut(s)	91, 614
FblI	GTMKAC	2 cut(s)	198, 814
Fnu4HI	GCNGC	5 cut(s)	446, 572, 642, 752, 755
FokI	GGATG	1 cut(s)	454
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	5 cut(s)	446, 572, 642, 752, 755
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	5 cut(s)	446, 572, 642, 752, 755
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	2 cut(s)	545, 668
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	2 cut(s)	231, 389
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	6 cut(s)	203, 436, 470, 775, 857, 872
HphI	GGTGA	4 cut(s)	27, 40, 52, 97
Hpy166II	GTNNAC	3 cut(s)	199, 238, 815
Hpy188I	TCNGA	6 cut(s)	194, 208, 422, 441, 664, 726
Hpy188III	TCNNGA	3 cut(s)	701, 806, 830
Hpy8I	GTNNAC	3 cut(s)	199, 238, 815
Hpy99I	CGWCG	3 cut(s)	233, 236, 301
HpyAV	CCTTC	6 cut(s)	98, 152, 472, 613, 721, 877
HpyCH4III	ACNGT	3 cut(s)	222, 242, 271
HpyCH4IV	ACGT	2 cut(s)	231, 853
HpyCH4V	TGCA	5 cut(s)	293, 323, 641, 688, 745
HpyF10VI	GCNNNNNNNGC	8 cut(s)	299, 365, 395, 454, 638, 647, 674, 751
HpyF3I	CTNAG	4 cut(s)	170, 191, 633, 663
HpySE526I	ACGT	2 cut(s)	231, 853
Hsp92I	GRCGYC	2 cut(s)	231, 389
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	826
LmnI	GCTCC	4 cut(s)	537, 622, 709, 748
LpnPI	CCDG	7 cut(s)	378, 473, 506, 686, 731, 780, 803
Lsp1109I	GCAGC	4 cut(s)	583, 653, 763, 766
LweI	GCATC	2 cut(s)	302, 432
MaeII	ACGT	2 cut(s)	231, 853
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	1 cut(s)	828
MboI	GATC	1 cut(s)	826
MboII	GAAGA	4 cut(s)	62, 364, 539, 704
MfeI	CAATTG	1 cut(s)	627
MhlI	GDGCHC	1 cut(s)	542
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	400
MseI	TTAA	1 cut(s)	347
MunI	CAATTG	1 cut(s)	627
MvnI	CGCG	2 cut(s)	335, 825
MwoI	GCNNNNNNNGC	8 cut(s)	299, 365, 395, 454, 638, 647, 674, 751
NdeII	GATC	1 cut(s)	826
NlaIV	GGNNCC	1 cut(s)	624
NmeAIII	GCCGAG	2 cut(s)	301, 521
PaeR7I	CTCGAG	1 cut(s)	672
PfeI	GAWTC	5 cut(s)	203, 436, 775, 857, 872
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	447, 573, 643, 753, 756
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Ppu21I	YACGTR	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	542
PspEI	GGTNACC	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	624
PspXI	VCTCGAGB	1 cut(s)	672
PstI	CTGCAG	1 cut(s)	643
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	2 cut(s)	822, 841
RsaNI	GTAC	2 cut(s)	821, 840
SacI	GAGCTC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	5 cut(s)	446, 572, 642, 752, 755
Sau3AI	GATC	1 cut(s)	826
SchI	GAGTC	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	542
SfaNI	GCATC	2 cut(s)	302, 432
SfcI	CTRYAG	2 cut(s)	218, 639
Sfr274I	CTCGAG	1 cut(s)	672
SlaI	CTCGAG	1 cut(s)	672
SmlI	CTYRAG	3 cut(s)	575, 672, 767
SmoI	CTYRAG	3 cut(s)	575, 672, 767
SsiI	CCGC	6 cut(s)	84, 335, 416, 445, 457, 607
SstI	GAGCTC	1 cut(s)	542
TaaI	ACNGT	3 cut(s)	222, 242, 271
TaiI	ACGT	2 cut(s)	234, 856
TaqI	TCGA	2 cut(s)	566, 673
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	5 cut(s)	203, 436, 775, 857, 872
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	3 cut(s)	455, 480, 690
TseI	GCWGC	4 cut(s)	571, 641, 751, 754
TspDTI	ATGAA	1 cut(s)	16
TspRI	CASTG	3 cut(s)	455, 480, 690
Tth111I	GACNNNGTC	1 cut(s)	233
XapI	RAATTY	4 cut(s)	31, 496, 658, 720
XhoI	CTCGAG	1 cut(s)	672
XmiI	GTMKAC	2 cut(s)	198, 814
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.