Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8289641.1

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 389

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8289641.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 389 bp

tcctctcgattgctgagtttctctgcctcgcgtcctccgccgtggtttcgatcggtttcgggttgagctcggcggtgccggggacgaagaacacggtttttatggggagcagggttttgggcggcggagcattggcgttggtggcggcggtggggattggggtgtggattcggaggcggcagtggaggagggtgagtagggagacgctgaagggtggggtggaggtgaatttgtttgagaggattgacaagttggaagaggatttgagaagctcggcgactattataagggttttgtctaggcagcttgagaaattggggataaggtttcgggttacccgaaaggctttgaaggagcccattgcggaggtactgttagtattctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.08

Weight (kDa)

11.07

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	75
AccII	CGCG	1 cut(s)	31
AciI	CCGC	8 cut(s)	38, 73, 122, 125, 145, 148, 177, 364
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	229
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	351
AluBI	AGCT	3 cut(s)	68, 272, 306
AluI	AGCT	3 cut(s)	68, 272, 306
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	204, 237
BanI	GGYRCC	1 cut(s)	75
BanII	GRGCYC	2 cut(s)	70, 359
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	4 cut(s)	123, 146, 178, 304
BlsI	GCNGC	4 cut(s)	124, 147, 179, 305
Bme1390I	CCNGG	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	77, 356
BmrFI	CCNGG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	41, 79
BsaXI	ACNNNNNCTCC	4 cut(s)	180, 210, 358, 388
Bse3DI	GCAATG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	41, 79
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	196
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	70, 359
Bsp143I	GATC	1 cut(s)	50
BspACI	CCGC	8 cut(s)	38, 73, 122, 125, 145, 148, 177, 364
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	77, 356
BspT107I	GGYRCC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	41, 79
BssMI	GATC	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	96, 374
Bst6I	CTCTTC	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	41
BstEII	GGTNACC	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	50
BstMCI	CGRYCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 142
BstPI	GGTNACC	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
CseI	GACGC	2 cut(s)	20, 213
Csp6I	GTAC	1 cut(s)	370
CviJI	RGCY	5 cut(s)	68, 272, 306, 346, 357
CviKI_1	RGCY	5 cut(s)	68, 272, 306, 346, 357
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	2 cut(s)	27, 140
Ecl136II	GAGCTC	1 cut(s)	68
Eco24I	GRGCYC	2 cut(s)	70, 359
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	229
Eco91I	GGTNACC	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	68
EcoO65I	GGTNACC	1 cut(s)	333
EcoT38I	GRGCYC	2 cut(s)	70, 359
Esp3I	CGTCTC	1 cut(s)	196
FaiI	YATR	2 cut(s)	103, 286
FaqI	GGGAC	1 cut(s)	96
Fnu4HI	GCNGC	4 cut(s)	123, 146, 178, 304
FriOI	GRGCYC	2 cut(s)	70, 359
Fsp4HI	GCNGC	4 cut(s)	123, 146, 178, 304
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	4 cut(s)	123, 146, 178, 304
HapII	CCGG	1 cut(s)	79
HgaI	GACGC	2 cut(s)	20, 213
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	2 cut(s)	204, 237
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	204, 345
HpyCH4III	ACNGT	2 cut(s)	96, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 142
HpyF3I	CTNAG	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	50
LmnI	GCTCC	3 cut(s)	107, 127, 354
LpnPI	CCDG	3 cut(s)	92, 96, 369
Lsp1109I	GCAGC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	2 cut(s)	99, 268
MhlI	GDGCHC	2 cut(s)	70, 359
MluCI	AATT	2 cut(s)	228, 313
MmeI	TCCRAC	1 cut(s)	233
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	37, 142
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	50
NlaIV	GGNNCC	2 cut(s)	77, 356
NmeAIII	GCCGAG	2 cut(s)	49, 253
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	4 cut(s)	124, 147, 179, 305
Ple19I	CGATCG	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	70
PspEI	GGTNACC	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	77, 356
PvuI	CGATCG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	70
SatI	GCNGC	4 cut(s)	123, 146, 178, 304
Sau3AI	GATC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	70, 359
SetI	ASST	6 cut(s)	70, 227, 274, 308, 328, 371
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	2 cut(s)	228, 313
SsiI	CCGC	8 cut(s)	38, 73, 122, 125, 145, 148, 177, 364
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	96, 374
TaqI	TCGA	2 cut(s)	7, 49
TasI	AATT	2 cut(s)	228, 313
TauI	GCSGC	3 cut(s)	125, 148, 180
TfiI	GAWTC	1 cut(s)	168
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	303
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	228
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.