Rw2G018310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011233
Physical Location & Seq
Forward (+)
23472077 .. 23474875
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018310.1

Sequence Viewer

Length: 897 bp
ATGTCATCATCCACCTTTCTCCACCTCCTCTTGTATTCACCACCTCCTCGCTTCACCCTCTTCTTCACCACCTCCTCCTCCTCTCTCCCCAAAACCCCCAACCTCTTCTCTCTCCCCACCACCACCTCCCGCCCACATTTCCCAATCTCTCTCACAAACCCTACCCATCTCACCTCCCTCCGCTCTCCCCTCCGTGCTCACGATTCCGATGCCCCCGTACGGACCTCCGACGACTTCACCGCCGCTTTCAATTTTGACTATTTCCTCTCGCTTGCTGAGTTTCTCTGCCTCGCGTCCTCCGCCGTGGTTTCGATCGGTTTCGGGTTGAGCTCGGCGGTGCCGGGGACGAAGAACACGGTTTTTATGGGGAGCAGGGTTTTGGGCGGCGGAGCATTGGCGTTGGTGGCGGCGGTGGGGATTGGGGTGTGGATTCGGAGGCGGCAGTGGAGGAGGGTGAGTAGGGACACGCTGAAGGGTGGGGTGGAGGTGAATTTGTTGGAGAGGATTGAGAAGTTGGAAGAGGATTTGAGAAGCTCGGCGACTATTATAAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATAAGGTTTCGGGTTACCCGAAAGGCTTTGAAGGAGCCCATTGCGGAGACTGCAGCTTTGGCTCAAAAGAACTCTGAGGTCACTCGAGCATTGGCAGCGCAAGAAGACATTCTGGAAAAGGAACTTGGAGAAACTCAAAAGGTTTTACTGGCAATGCAGGAGCAACAGCAAAAACAACTGGAGCTGATTCTTGCCATTGCAAAGAATGGGAAGCTTTTGGACAACAAACAGGCAAATGATCAACCGGAGAGTACCGTTAGAATACGTGATTCAAGTACAGACAATTCAAAACAGAAGGAACCCCATCAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

32.94

Weight (kDa)

9.71

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 183
AccII CGCG 1 cut(s) 293
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 3 cut(s) 219, 835, 859
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 4 cut(s) 250, 613, 855, 870
AjuI GAANNNNNNNTTGG 2 cut(s) 690, 722
AluBI AGCT 6 cut(s) 330, 534, 568, 638, 766, 796
AluI AGCT 6 cut(s) 330, 534, 568, 638, 766, 796
Alw21I GWGCWC 2 cut(s) 199, 332
Alw26I GTCTC 1 cut(s) 623
Ama87I CYCGRG 1 cut(s) 666
ApeKI GCWGC 3 cut(s) 565, 635, 677
ApoI RAATTY 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 7 cut(s) 30, 46, 58, 163, 229, 466, 499
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 332, 621
BbsI GAAGAC 1 cut(s) 693
Bbv12I GWGCWC 2 cut(s) 199, 332
BbvI GCAGC 3 cut(s) 577, 647, 689
BccI CCATC 2 cut(s) 174, 894
BceAI ACGGC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 633
BisI GCNGC 7 cut(s) 243, 385, 408, 440, 566, 636, 678
BlsI GCNGC 7 cut(s) 244, 386, 409, 441, 567, 637, 679
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 3 cut(s) 339, 618, 882
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 693
BpmI CTGGAG 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 848
BsaJI CCNNGG 2 cut(s) 303, 341
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 2 cut(s) 735, 765
Bse3DI GCAATG 3 cut(s) 621, 741, 777
BseDI CCNNGG 2 cut(s) 303, 341
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 3 cut(s) 621, 741, 777
BseMII CTCAG 2 cut(s) 267, 648
BseNI ACTGG 2 cut(s) 735, 765
BseRI GAGGAG 6 cut(s) 17, 36, 64, 67, 70, 463
BseXI GCAGC 3 cut(s) 577, 647, 689
Bsh1236I CGCG 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 199, 332
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 2 cut(s) 341, 827
BsiWI CGTACG 1 cut(s) 217
BslFI GGGAC 2 cut(s) 358, 476
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 623
BsmFI GGGAC 2 cut(s) 358, 476
BsoBI CYCGRG 1 cut(s) 666
Bsp1286I GDGCHC 3 cut(s) 199, 332, 621
Bsp143I GATC 2 cut(s) 312, 820
BspCNI CTCAG 2 cut(s) 268, 649
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 3 cut(s) 339, 618, 882
BspMAI CTGCAG 1 cut(s) 637
BspT107I GGYRCC 1 cut(s) 337
BsrBI CCGCTC 1 cut(s) 183
BsrDI GCAATG 3 cut(s) 621, 741, 777
BsrI ACTGG 2 cut(s) 735, 765
BssECI CCNNGG 2 cut(s) 303, 341
BssMI GATC 2 cut(s) 312, 820
Bst4CI ACNGT 2 cut(s) 358, 838
Bst6I CTCTTC 3 cut(s) 65, 110, 513
BstBAI YACGTR 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 276, 657
BstDSI CCRYGG 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 595
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 293
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 2 cut(s) 315, 823
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 2 cut(s) 312, 820
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 5 cut(s) 299, 404, 632, 641, 677
BstPI GGTNACC 1 cut(s) 595
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 633
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 3 cut(s) 577, 647, 689
BstV2I GAAGAC 1 cut(s) 693
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 8
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 1 cut(s) 282
Csp6I GTAC 3 cut(s) 218, 834, 858
CviJI RGCY 9 cut(s) 330, 534, 568, 608, 619, 638, 644, 766, 796
CviKI_1 RGCY 9 cut(s) 330, 534, 568, 608, 619, 638, 644, 766, 796
CviQI GTAC 3 cut(s) 218, 834, 858
DdeI CTNAG 2 cut(s) 276, 657
DpnI GATC 2 cut(s) 314, 822
DpnII GATC 2 cut(s) 312, 820
Eam1104I CTCTTC 3 cut(s) 65, 110, 513
EarI CTCTTC 3 cut(s) 65, 110, 513
EciI GGCGGA 2 cut(s) 289, 402
Ecl136II GAGCTC 1 cut(s) 330
Eco24I GRGCYC 2 cut(s) 332, 621
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 666
Eco91I GGTNACC 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 330
EcoO65I GGTNACC 1 cut(s) 595
EcoT38I GRGCYC 2 cut(s) 332, 621
FaiI YATR 3 cut(s) 365, 548, 895
FaqI GGGAC 2 cut(s) 358, 476
FauI CCCGC 1 cut(s) 137
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 7 cut(s) 243, 385, 408, 440, 566, 636, 678
FriOI GRGCYC 2 cut(s) 332, 621
Fsp4HI GCNGC 7 cut(s) 243, 385, 408, 440, 566, 636, 678
FspBI CTAG 1 cut(s) 561
GlaI GCGC 1 cut(s) 681
GluI GCNGC 7 cut(s) 243, 385, 408, 440, 566, 636, 678
GsuI CTGGAG 1 cut(s) 782
HapII CCGG 2 cut(s) 341, 827
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 682
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 4 cut(s) 203, 430, 769, 851
HpaII CCGG 2 cut(s) 341, 827
HphI GGTGA 7 cut(s) 30, 46, 58, 163, 229, 466, 499
Hpy188I TCNGA 4 cut(s) 208, 229, 435, 658
Hpy188III TCNNGA 2 cut(s) 200, 695
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 466, 607, 871
HpyCH4III ACNGT 2 cut(s) 358, 838
HpyCH4IV ACGT 1 cut(s) 847
HpyCH4V TGCA 3 cut(s) 635, 739, 782
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 404, 632, 641, 677
HpyF3I CTNAG 2 cut(s) 276, 657
HpySE526I ACGT 1 cut(s) 847
HspAI GCGC 1 cut(s) 680
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 2 cut(s) 312, 820
LmnI GCTCC 5 cut(s) 369, 389, 616, 742, 763
LpnPI CCDG 8 cut(s) 354, 358, 680, 716, 725, 746, 797, 840
Lsp1109I GCAGC 3 cut(s) 577, 647, 689
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 561
MaeII ACGT 1 cut(s) 847
MaeIII GTNAC 2 cut(s) 595, 661
MalI GATC 2 cut(s) 314, 822
MbiI CCGCTC 1 cut(s) 183
MboI GATC 2 cut(s) 312, 820
MboII GAAGA 6 cut(s) 52, 55, 97, 361, 530, 698
MhlI GDGCHC 3 cut(s) 199, 332, 621
MluCI AATT 4 cut(s) 250, 490, 575, 865
MmeI TCCRAC 3 cut(s) 252, 477, 495
MroXI GAANNNNTTC 1 cut(s) 690
MspI CCGG 2 cut(s) 341, 827
MspR9I CCNGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 5 cut(s) 299, 404, 632, 641, 677
NciI CCSGG 1 cut(s) 342
NdeII GATC 2 cut(s) 312, 820
NlaIV GGNNCC 3 cut(s) 339, 618, 882
NmeAIII GCCGAG 2 cut(s) 311, 515
NmuCI GTSAC 1 cut(s) 661
PaeR7I CTCGAG 1 cut(s) 666
PcsI WCGNNNNNNNCGW 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 4 cut(s) 203, 430, 769, 851
Pfl23II CGTACG 1 cut(s) 217
PkrI GCNGC 7 cut(s) 244, 386, 409, 441, 567, 637, 679
Ple19I CGATCG 1 cut(s) 315
Ppu21I YACGTR 1 cut(s) 848
PsiI TTATAA 1 cut(s) 548
Psp124BI GAGCTC 1 cut(s) 332
PspEI GGTNACC 1 cut(s) 595
PspLI CGTACG 1 cut(s) 217
PspN4I GGNNCC 3 cut(s) 339, 618, 882
PspPI GGNCC 1 cut(s) 222
PspXI VCTCGAGB 1 cut(s) 666
PstI CTGCAG 1 cut(s) 637
PvuI CGATCG 1 cut(s) 315
RsaI GTAC 3 cut(s) 219, 835, 859
RsaNI GTAC 3 cut(s) 218, 834, 858
SacI GAGCTC 1 cut(s) 332
SatI GCNGC 7 cut(s) 243, 385, 408, 440, 566, 636, 678
Sau3AI GATC 2 cut(s) 312, 820
Sau96I GGNCC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 3 cut(s) 199, 332, 621
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 633
Sfr274I CTCGAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 569, 666
SmoI CTYRAG 2 cut(s) 569, 666
Sse9I AATT 4 cut(s) 250, 490, 575, 865
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 358, 838
TaiI ACGT 1 cut(s) 850
TaqI TCGA 2 cut(s) 311, 667
TasI AATT 4 cut(s) 250, 490, 575, 865
TatI WGTACW 1 cut(s) 857
TauI GCSGC 4 cut(s) 245, 387, 410, 442
TfiI GAWTC 4 cut(s) 203, 430, 769, 851
TscAI CASTG 1 cut(s) 449
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 3 cut(s) 565, 635, 677
Tsp45I GTSAC 1 cut(s) 661
TspGWI ACGGA 2 cut(s) 182, 235
TspRI CASTG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 490
XhoI CTCGAG 1 cut(s) 666
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.