Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Reverse (-)

67720627 .. 67724195

Gene Structure 3569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCATCATCCACCTTTCTCCACCTCCTCTTATATTCACCACCTCCTCGCTTCACCCTCTTCTTCACCACCACCTCCTCCTCCTCCTCTCTCCCCAAAACCCCCAACCTCTTCTCTCTCCCCACCACCACCTCCACCTCCCGCCCACATTTCCCAATCTCTCTCACAAACCCTACCCATCTCACCTCCCTCCGAGCTTACGATTCCGATGCCCCCGTACGGACCTCCGACCACTTCACCGCCGCCGCTTTCAATTTTGACTATTTCCTCTCGATTGCTGAGTTTCTCTGCCTCGCGTCCTCCGCCGTGGTTTCCATCGGTTTCGGGTTGAGCTCGGCGGTTCCGGGGACGAAGAACACGGTTTTTATGGGGAGCAGGGTTTTGGGCGGCGGAGCATTGGCGTTGGTGGTGGCGGTGGGGATTGGGGCGTGGATTCGGAGGCGGCAGTGGAGGAGGGTGAGTAGGGAGACGGTGAAGGGTGGGGCGGAGGTGAATTTGTTTGAGAGGATTGAGAAGTTGGAAGAGGATTTGAGAAGCTCGGCGACTATTATAAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATAAGGTTTCGGGTTACTCGAAAGGCTTTGAAGGAGCCCATTGCTGAGACTGCAGCTTTGGCTCAAAAGAACTCTGAGGTCACTCGAGCATTGGCAGCGCAAGAAGACATTCTGGAAAAGGAGCTTGGAGAAACTCAAAAGGTTTTACTGGCAATGCAGGTGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.37

Weight (kDa)

9.93

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AarI	CACCTGC	1 cut(s)	733
Acc36I	ACCTGC	1 cut(s)	733
AccB1I	GGYRCC	1 cut(s)	745
AccII	CGCG	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	493
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	253, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AluBI	AGCT	6 cut(s)	197, 333, 537, 571, 641, 709
AluI	AGCT	6 cut(s)	197, 333, 537, 571, 641, 709
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	461, 626
Ama87I	CYCGRG	1 cut(s)	669
ApeKI	GCWGC	3 cut(s)	568, 638, 680
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	625, 657
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	8 cut(s)	30, 46, 58, 175, 229, 469, 484, 502
AvaI	CYCGRG	1 cut(s)	669
AvaII	GGWCC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	745
BanII	GRGCYC	2 cut(s)	335, 624
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	3 cut(s)	580, 650, 692
BccI	CCATC	2 cut(s)	186, 323
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	461, 626
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	733
BisI	GCNGC	7 cut(s)	243, 246, 388, 443, 569, 639, 681
BlsI	GCNGC	7 cut(s)	244, 247, 389, 444, 570, 640, 682
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	669
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	3 cut(s)	342, 621, 747
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	306, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	738
Bse3DI	GCAATG	2 cut(s)	624, 744
BseDI	CCNNGG	2 cut(s)	306, 344
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	624, 744
BseMII	CTCAG	3 cut(s)	270, 621, 651
BseNI	ACTGG	1 cut(s)	738
BseRI	GAGGAG	7 cut(s)	17, 36, 67, 70, 73, 76, 466
BseXI	GCAGC	3 cut(s)	580, 650, 692
Bsh1236I	CGCG	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	745
BsiHKAI	GWGCWC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	669
BsiSI	CCGG	1 cut(s)	344
BsiWI	CGTACG	1 cut(s)	217
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	461, 626
BsmBI	CGTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	361
BsoBI	CYCGRG	1 cut(s)	669
Bsp1286I	GDGCHC	2 cut(s)	335, 624
BspCNI	CTCAG	3 cut(s)	271, 622, 652
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	3 cut(s)	342, 621, 747
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	733
BspT107I	GGYRCC	1 cut(s)	745
BsrDI	GCAATG	2 cut(s)	624, 744
BsrI	ACTGG	1 cut(s)	738
BssECI	CCNNGG	2 cut(s)	306, 344
Bst4CI	ACNGT	2 cut(s)	361, 472
Bst6I	CTCTTC	3 cut(s)	65, 116, 516
BstDEI	CTNAG	3 cut(s)	279, 630, 660
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	8
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	685
BstMAI	GTCTC	2 cut(s)	461, 626
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 635, 644, 680
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	636
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	3 cut(s)	580, 650, 692
BstV2I	GAAGAC	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	452
BveI	ACCTGC	1 cut(s)	733
CfoI	GCGC	1 cut(s)	685
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	218
CviJI	RGCY	9 cut(s)	197, 333, 537, 571, 611, 622, 641, 647, 709
CviKI_1	RGCY	9 cut(s)	197, 333, 537, 571, 611, 622, 641, 647, 709
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	3 cut(s)	279, 630, 660
Eam1104I	CTCTTC	3 cut(s)	65, 116, 516
EarI	CTCTTC	3 cut(s)	65, 116, 516
EciI	GGCGGA	3 cut(s)	292, 405, 500
Ecl136II	GAGCTC	1 cut(s)	333
Eco24I	GRGCYC	2 cut(s)	335, 624
Eco47I	GGWCC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	333
EcoT38I	GRGCYC	2 cut(s)	335, 624
Esp3I	CGTCTC	1 cut(s)	461
FaiI	YATR	4 cut(s)	34, 368, 551, 751
FaqI	GGGAC	1 cut(s)	361
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	7 cut(s)	243, 246, 388, 443, 569, 639, 681
FriOI	GRGCYC	2 cut(s)	335, 624
Fsp4HI	GCNGC	7 cut(s)	243, 246, 388, 443, 569, 639, 681
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	7 cut(s)	243, 246, 388, 443, 569, 639, 681
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	685
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HinfI	GANTC	2 cut(s)	203, 433
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	8 cut(s)	30, 46, 58, 175, 229, 469, 484, 502
Hpy188I	TCNGA	5 cut(s)	194, 208, 229, 438, 661
Hpy188III	TCNNGA	2 cut(s)	271, 698
HpyAV	CCTTC	2 cut(s)	469, 610
HpyCH4III	ACNGT	2 cut(s)	361, 472
HpyCH4V	TGCA	2 cut(s)	638, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 635, 644, 680
HpyF3I	CTNAG	3 cut(s)	279, 630, 660
HspAI	GCGC	1 cut(s)	683
LmnI	GCTCC	4 cut(s)	372, 392, 619, 706
LpnPI	CCDG	5 cut(s)	357, 361, 683, 719, 728
Lsp1109I	GCAGC	3 cut(s)	580, 650, 692
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	598, 664
MboII	GAAGA	6 cut(s)	52, 55, 103, 364, 533, 701
MhlI	GDGCHC	2 cut(s)	335, 624
MluCI	AATT	3 cut(s)	253, 493, 578
MmeI	TCCRAC	2 cut(s)	252, 498
MroXI	GAANNNNTTC	1 cut(s)	693
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	4 cut(s)	302, 635, 644, 680
NciI	CCSGG	1 cut(s)	345
NlaIV	GGNNCC	3 cut(s)	342, 621, 747
NmeAIII	GCCGAG	2 cut(s)	314, 518
NmuCI	GTSAC	1 cut(s)	664
PaeR7I	CTCGAG	1 cut(s)	669
PaqCI	CACCTGC	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	203, 433
Pfl23II	CGTACG	1 cut(s)	217
PkrI	GCNGC	7 cut(s)	244, 247, 389, 444, 570, 640, 682
PsiI	TTATAA	1 cut(s)	551
Psp124BI	GAGCTC	1 cut(s)	335
PspLI	CGTACG	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	342, 621, 747
PspPI	GGNCC	1 cut(s)	222
PspXI	VCTCGAGB	1 cut(s)	669
PstI	CTGCAG	1 cut(s)	640
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	335
SatI	GCNGC	7 cut(s)	243, 246, 388, 443, 569, 639, 681
Sau96I	GGNCC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	2 cut(s)	335, 624
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	636
Sfr274I	CTCGAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	222
SlaI	CTCGAG	1 cut(s)	669
SmlI	CTYRAG	2 cut(s)	572, 669
SmoI	CTYRAG	2 cut(s)	572, 669
Sse9I	AATT	3 cut(s)	253, 493, 578
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	361, 472
TaqI	TCGA	3 cut(s)	272, 604, 670
TasI	AATT	3 cut(s)	253, 493, 578
TauI	GCSGC	4 cut(s)	245, 248, 390, 445
TfiI	GAWTC	2 cut(s)	203, 433
TscAI	CASTG	1 cut(s)	452
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	3 cut(s)	568, 638, 680
Tsp45I	GTSAC	1 cut(s)	664
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.