Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011233

Physical Location & Seq

Genomic Coordinates Forward (+)

16966085 .. 16967375

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0182100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCCTCCATAGATGCTGTCACAGCAAGCTTTGCTGCTTCTCTTGCTCTCGCTGCGGGTGGTAGCGCCCCGGATCTGGGTAAGATTGGTGGTGGTCCGGTGCGTAAGTCATCTCAGTCTTTTCTACCTGGCAAACCTCTGACCCACAAGCCAGTGGATCCCAAAGCTTTCAAGGCTCACTTCCACAGTACCTGGATGGTGGATAAGGATTTTAAGGTTCAGGAAAAGGCTGGAGATGTGTTCCTGTTCTCTTTTGAATCGATTCGTGATCGTAACAAGATACTACGGGCCGGGGAGGGGTTTGAATATGATGGCTTAAAGCCTCTGCATGAAGCCCAATTCAAGCATCTACGTGTGTGGGTTAGGGTTTCAGGGATTCCTCCTTTGGATGAAGAACCTGAGAATTTTACTCTTATCGGTAATCTCTTGGGTGGTTTCTTAGACTATGACAATAAGGAATTTAAGAAGGGTGTGATTCGGATCTTCTTTACCCATGATATCTCCAAACCGTTCTTACTTGAGTGGAAGGTTTTCTTGGATGTCAGCGTCGAACGGGTGCTACAATTTCAGTTTGAGCATCTGAAAGGGAGATGCTCACAGTGTGGACTAGTCACGCATGCTGGGATTCCTTGTGAGGAGCCGAATACTACAATATCGACACCTAGGGTTTTGAATTTTCCGGGACCGTCAACCTCAGGAGAACAAGCGTGGGTTCTTCACCGTACTGCTTCCTCATCTATTCCCAAGAAGAAGAAACCAACCATTCATCGAGTTGAACGCCCTAATGTTTCGAACCCGGCTGCTAGTAATGGTGAGAACATTGTTCTAGGGGCGGAGCACGGTTTGGAGCAGAACTTGAGTTCGGTTTTGGTCCCTGATGTTGCGACTGGTTCTGGTACAACTGAAGCTGCAGACATCATGCAGGTTCTGCAACAAGATGTAGTGGTTTCGAAGAAAAGGGATAGGAATGGTGGTTGTGATCCCTCTCCAAAGAAGTTCAAGACCATTTTGGGTGGTAAAATCCCAACTTTGCATGCTGATGCTTTGGGTTTGATTGGAGATGATAATGATACTCCTCTTGTCACTCTCAAGAAGAAGATGGGTAGGCCGCTTGGCAGCAGGAATAAGAGCCAACACTCTAGTAAGAAGGCGAGAGCTGCCCCTCTGAGACTCACCTACCCTGCAGAGGGTGTTTTTGTTTCAAGCCCTAGAGATAAGGGCAAAGGAAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

411

Amino Acids

44.76

Weight (kDa)

9.46

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65250
fragaria_vesca	FvH4_1g20490 FvH4_1g20490
malus_domestica	MD00G1037300.v1.1 MD01G1033600.v1.1
prunus_persica	Prupe.6G191100_v2.0.a1 Prupe.6G191100_v2.0.a1
pyrus_communis	pycom15g28290
rosa_chinensis	RchiOBHm_Chr2g0112751
rosa_laevigata	RLG00000018006
rosa_multiflora	Rmu_co8289641.1_g000001 Rmu_sc0001708.1_g000036
rosa_roxburghii	Rroxscaffold_2G00131180
rosa_rugosa	Rorug02G0182100 Rorug07G0144500
rosa_samantha	Rh2AG236800 Rh2BG249700 Rh2CG240800 Rh2DG244300
rosa_wichuraiana	Rw2G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	913
AciI	CCGC	3 cut(s)	56, 833, 1109
AclWI	GGATC	5 cut(s)	81, 152, 165, 488, 974
AcsI	RAATTY	3 cut(s)	403, 458, 673
AcuI	CTGAAG	1 cut(s)	924
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	3 cut(s)	190, 724, 898
AfiI	CCNNNNNNNGG	5 cut(s)	76, 77, 297, 1186, 1187
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	8 cut(s)	172, 257, 305, 343, 673, 776, 1000, 1203
AhlI	ACTAGT	1 cut(s)	607
AjnI	CCWGG	2 cut(s)	127, 191
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	5 cut(s)	30, 167, 908, 1157, 1231
AluI	AGCT	5 cut(s)	30, 167, 908, 1157, 1231
Alw21I	GWGCWC	1 cut(s)	840
Alw26I	GTCTC	1 cut(s)	1162
AlwI	GGATC	5 cut(s)	81, 152, 165, 488, 974
AlwNI	CAGNNNCTG	2 cut(s)	192, 928
AoxI	GGCC	3 cut(s)	3, 288, 1106
ApeKI	GCWGC	6 cut(s)	35, 53, 800, 908, 1116, 1157
ApoI	RAATTY	3 cut(s)	403, 458, 673
Asp700I	GAANNNNTTC	2 cut(s)	261, 530
AspA2I	CCTAGG	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	4 cut(s)	95, 288, 683, 871
AsuC2I	CCSGG	4 cut(s)	71, 292, 681, 797
AsuHPI	GGTGA	3 cut(s)	710, 824, 1165
AsuII	TTCGAA	2 cut(s)	791, 950
AvaII	GGWCC	3 cut(s)	95, 683, 871
AvrII	CCTAGG	1 cut(s)	662
AxyI	CCTNAGG	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	840
BbvI	GCAGC	6 cut(s)	22, 40, 787, 895, 1128, 1144
BccI	CCATC	3 cut(s)	190, 305, 1093
BciT130I	CCWGG	2 cut(s)	129, 193
BcnI	CCSGG	4 cut(s)	71, 292, 681, 797
BcoDI	GTCTC	1 cut(s)	1162
BcuI	ACTAGT	1 cut(s)	607
BfaI	CTAG	6 cut(s)	608, 663, 804, 827, 1140, 1209
BfmI	CTRYAG	2 cut(s)	909, 1182
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	913
BisI	GCNGC	7 cut(s)	36, 54, 801, 909, 1109, 1117, 1158
BlnI	CCTAGG	1 cut(s)	662
BlsI	GCNGC	7 cut(s)	37, 55, 802, 910, 1110, 1118, 1159
Bme1390I	CCNGG	6 cut(s)	71, 129, 193, 292, 681, 797
Bme18I	GGWCC	3 cut(s)	95, 683, 871
BmgT120I	GGNCC	4 cut(s)	95, 288, 683, 871
BmiI	GGNNCC	4 cut(s)	159, 639, 684, 873
BmrFI	CCNGG	6 cut(s)	71, 129, 193, 292, 681, 797
BmsI	GCATC	5 cut(s)	4, 355, 581, 586, 1030
BpmI	CTGGAG	1 cut(s)	252
Bpu14I	TTCGAA	2 cut(s)	791, 950
BpuEI	CTTGAG	3 cut(s)	539, 877, 1073
BpuMI	CCSGG	4 cut(s)	71, 292, 681, 797
Bsa29I	ATCGAT	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	69, 291, 662
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 77, 297, 1186, 1187
Bse1I	ACTGG	2 cut(s)	152, 892
Bse21I	CCTNAGG	1 cut(s)	694
Bse8I	GATNNNNATC	1 cut(s)	479
BseBI	CCWGG	2 cut(s)	129, 193
BseCI	ATCGAT	1 cut(s)	260
BseDI	CCNNGG	3 cut(s)	69, 291, 662
BseGI	GGATG	3 cut(s)	201, 394, 544
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	5 cut(s)	76, 77, 297, 1186, 1187
BseMII	CTCAG	4 cut(s)	128, 390, 708, 1157
BseNI	ACTGG	2 cut(s)	152, 892
BseRI	GAGGAG	2 cut(s)	650, 1065
BseXI	GCAGC	6 cut(s)	22, 40, 787, 895, 1128, 1144
BseYI	CCCAGC	1 cut(s)	620
BshFI	GGCC	3 cut(s)	5, 290, 1108
BshVI	ATCGAT	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	840
BsiSI	CCGG	5 cut(s)	71, 98, 291, 680, 797
BslFI	GGGAC	2 cut(s)	696, 857
BslI	CCNNNNNNNGG	5 cut(s)	76, 77, 297, 1186, 1187
BsmAI	GTCTC	1 cut(s)	1162
BsmFI	GGGAC	2 cut(s)	696, 857
BsnI	GGCC	3 cut(s)	5, 290, 1108
Bsp119I	TTCGAA	2 cut(s)	791, 950
Bsp1286I	GDGCHC	1 cut(s)	840
Bsp143I	GATC	5 cut(s)	73, 157, 268, 480, 979
BspACI	CCGC	3 cut(s)	56, 833, 1109
BspANI	GGCC	3 cut(s)	5, 290, 1108
BspCNI	CTCAG	4 cut(s)	127, 391, 707, 1158
BspDI	ATCGAT	1 cut(s)	260
BspLI	GGNNCC	4 cut(s)	159, 639, 684, 873
BspMAI	CTGCAG	2 cut(s)	913, 1186
BspMI	ACCTGC	1 cut(s)	913
BspPI	GGATC	5 cut(s)	81, 152, 165, 488, 974
BspT104I	TTCGAA	2 cut(s)	791, 950
BsrI	ACTGG	2 cut(s)	152, 892
BssECI	CCNNGG	3 cut(s)	69, 291, 662
BssMI	GATC	5 cut(s)	73, 157, 268, 480, 979
BssT1I	CCWWGG	1 cut(s)	662
Bst2UI	CCWGG	2 cut(s)	129, 193
Bst4CI	ACNGT	6 cut(s)	188, 510, 600, 687, 722, 842
BstAPI	GCANNNNNTGC	2 cut(s)	32, 928
BstBAI	YACGTR	1 cut(s)	353
BstBI	TTCGAA	2 cut(s)	791, 950
BstC8I	GCNNGC	3 cut(s)	28, 618, 1035
BstDEI	CTNAG	5 cut(s)	114, 399, 439, 694, 1166
BstF5I	GGATG	3 cut(s)	201, 394, 544
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	5 cut(s)	76, 160, 271, 483, 982
BstMAI	GTCTC	1 cut(s)	1162
BstMBI	GATC	5 cut(s)	73, 157, 268, 480, 979
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 32, 44, 53, 173, 928, 1157
BstNI	CCWGG	2 cut(s)	129, 193
BstNSI	RCATGY	2 cut(s)	620, 1037
BstSCI	CCNGG	6 cut(s)	69, 127, 191, 290, 679, 795
BstSFI	CTRYAG	2 cut(s)	909, 1182
BstV1I	GCAGC	6 cut(s)	22, 40, 787, 895, 1128, 1144
BstX2I	RGATCY	3 cut(s)	73, 157, 480
BstYI	RGATCY	3 cut(s)	73, 157, 480
Bsu15I	ATCGAT	1 cut(s)	260
Bsu36I	CCTNAGG	1 cut(s)	694
BsuRI	GGCC	3 cut(s)	5, 290, 1108
BsuTUI	ATCGAT	1 cut(s)	260
BtsCI	GGATG	3 cut(s)	201, 394, 544
BtsIMutI	CAGTG	2 cut(s)	159, 605
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	3 cut(s)	28, 618, 1035
CaiI	CAGNNNCTG	2 cut(s)	192, 928
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	95, 288, 683, 871
ClaI	ATCGAT	1 cut(s)	260
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	3 cut(s)	189, 723, 897
CviAII	CATG	5 cut(s)	329, 494, 617, 919, 1034
CviQI	GTAC	3 cut(s)	189, 723, 897
DdeI	CTNAG	5 cut(s)	114, 399, 439, 694, 1166
DpnI	GATC	5 cut(s)	75, 159, 270, 482, 981
DpnII	GATC	5 cut(s)	73, 157, 268, 480, 979
DraIII	CACNNNGTG	1 cut(s)	602
EciI	GGCGGA	1 cut(s)	848
Eco130I	CCWWGG	1 cut(s)	662
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	3 cut(s)	95, 683, 871
Eco57I	CTGAAG	1 cut(s)	924
Eco81I	CCTNAGG	1 cut(s)	694
EcoRII	CCWGG	2 cut(s)	127, 191
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	662
FaeI	CATG	5 cut(s)	332, 497, 620, 922, 1037
FaiI	YATR	8 cut(s)	11, 309, 330, 447, 495, 618, 920, 1035
FalI	AAGNNNNNCTT	5 cut(s)	164, 196, 518, 550, 1215
FaqI	GGGAC	2 cut(s)	696, 857
FatI	CATG	5 cut(s)	328, 493, 616, 918, 1033
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	7 cut(s)	36, 54, 801, 909, 1109, 1117, 1158
FokI	GGATG	3 cut(s)	208, 401, 551
Fsp4HI	GCNGC	7 cut(s)	36, 54, 801, 909, 1109, 1117, 1158
FspBI	CTAG	6 cut(s)	608, 663, 804, 827, 1140, 1209
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	7 cut(s)	36, 54, 801, 909, 1109, 1117, 1158
GsaI	CCCAGC	1 cut(s)	624
GsuI	CTGGAG	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	5, 290, 1108
HapII	CCGG	5 cut(s)	71, 98, 291, 680, 797
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	332, 497, 620, 922, 1037
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HindIII	AAGCTT	3 cut(s)	28, 165, 1229
HinfI	GANTC	6 cut(s)	257, 262, 376, 475, 625, 1170
HpaII	CCGG	5 cut(s)	71, 98, 291, 680, 797
HphI	GGTGA	3 cut(s)	710, 824, 1165
Hpy166II	GTNNAC	2 cut(s)	605, 690
Hpy188I	TCNGA	4 cut(s)	141, 480, 582, 1167
Hpy188III	TCNNGA	5 cut(s)	221, 266, 696, 1000, 1090
Hpy8I	GTNNAC	2 cut(s)	605, 690
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	3 cut(s)	460, 520, 1141
HpyCH4III	ACNGT	6 cut(s)	188, 510, 600, 687, 722, 842
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	6 cut(s)	328, 911, 922, 931, 1033, 1184
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 32, 44, 53, 173, 928, 1157
HpyF3I	CTNAG	5 cut(s)	114, 399, 439, 694, 1166
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	5 cut(s)	332, 497, 620, 922, 1037
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	73, 157, 268, 480, 979
LmnI	GCTCC	3 cut(s)	637, 835, 847
Lsp1109I	GCAGC	6 cut(s)	22, 40, 787, 895, 1128, 1144
LweI	GCATC	5 cut(s)	4, 355, 581, 586, 1030
MaeI	CTAG	6 cut(s)	608, 663, 804, 827, 1140, 1209
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	4 cut(s)	19, 272, 610, 1081
MalI	GATC	5 cut(s)	75, 159, 270, 482, 981
MboI	GATC	5 cut(s)	73, 157, 268, 480, 979
MboII	GAAGA	8 cut(s)	404, 475, 707, 760, 763, 964, 1105, 1108
MflI	RGATCY	3 cut(s)	73, 157, 480
MhlI	GDGCHC	1 cut(s)	840
MluCI	AATT	5 cut(s)	338, 403, 458, 563, 673
MlyI	GAGTC	1 cut(s)	1164
MroXI	GAANNNNTTC	2 cut(s)	261, 530
MseI	TTAA	3 cut(s)	213, 317, 462
MslI	CAYNNNNRTG	2 cut(s)	351, 1038
MspI	CCGG	5 cut(s)	71, 98, 291, 680, 797
MspR9I	CCNGG	6 cut(s)	71, 129, 193, 292, 681, 797
MvaI	CCWGG	2 cut(s)	129, 193
MwoI	GCNNNNNNNGC	7 cut(s)	23, 32, 44, 53, 173, 928, 1157
NciI	CCSGG	4 cut(s)	71, 292, 681, 797
NdeII	GATC	5 cut(s)	73, 157, 268, 480, 979
NlaIII	CATG	5 cut(s)	332, 497, 620, 922, 1037
NlaIV	GGNNCC	4 cut(s)	159, 639, 684, 873
NmuCI	GTSAC	3 cut(s)	19, 610, 1081
NspI	RCATGY	2 cut(s)	620, 1037
NspV	TTCGAA	2 cut(s)	791, 950
PaeI	GCATGC	2 cut(s)	620, 1037
PdmI	GAANNNNTTC	2 cut(s)	261, 530
PfeI	GAWTC	5 cut(s)	257, 262, 376, 475, 625
PfoI	TCCNGGA	1 cut(s)	679
PkrI	GCNGC	7 cut(s)	37, 55, 802, 910, 1110, 1118, 1159
PleI	GAGTC	1 cut(s)	1164
PpsI	GAGTC	1 cut(s)	1164
Ppu21I	YACGTR	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	127, 191
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	2 cut(s)	127, 191
PspN4I	GGNNCC	4 cut(s)	159, 639, 684, 873
PspPI	GGNCC	4 cut(s)	95, 288, 683, 871
PsrI	GAACNNNNNNTAC	2 cut(s)	543, 575
PstI	CTGCAG	2 cut(s)	913, 1186
PstNI	CAGNNNCTG	2 cut(s)	192, 928
PsuI	RGATCY	3 cut(s)	73, 157, 480
RsaI	GTAC	3 cut(s)	190, 724, 898
RsaNI	GTAC	3 cut(s)	189, 723, 897
RseI	CAYNNNNRTG	2 cut(s)	351, 1038
SaqAI	TTAA	3 cut(s)	213, 317, 462
SatI	GCNGC	7 cut(s)	36, 54, 801, 909, 1109, 1117, 1158
Sau3AI	GATC	5 cut(s)	73, 157, 268, 480, 979
Sau96I	GGNCC	4 cut(s)	95, 288, 683, 871
SchI	GAGTC	1 cut(s)	1164
ScrFI	CCNGG	6 cut(s)	71, 129, 193, 292, 681, 797
SduI	GDGCHC	1 cut(s)	840
SfaNI	GCATC	5 cut(s)	4, 355, 581, 586, 1030
SfcI	CTRYAG	2 cut(s)	909, 1182
SfuI	TTCGAA	2 cut(s)	791, 950
SinI	GGWCC	3 cut(s)	95, 683, 871
SmiMI	CAYNNNNRTG	2 cut(s)	351, 1038
SmlI	CTYRAG	3 cut(s)	518, 856, 1088
SmoI	CTYRAG	3 cut(s)	518, 856, 1088
SpeI	ACTAGT	1 cut(s)	607
SphI	GCATGC	2 cut(s)	620, 1037
Sse9I	AATT	5 cut(s)	338, 403, 458, 563, 673
SsiI	CCGC	3 cut(s)	56, 833, 1109
SspMI	CTAG	6 cut(s)	608, 663, 804, 827, 1140, 1209
StyD4I	CCNGG	6 cut(s)	69, 127, 191, 290, 679, 795
StyI	CCWWGG	1 cut(s)	662
TaaI	ACNGT	6 cut(s)	188, 510, 600, 687, 722, 842
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	6 cut(s)	260, 549, 656, 769, 791, 950
TasI	AATT	5 cut(s)	338, 403, 458, 563, 673
TauI	GCSGC	1 cut(s)	1111
TfiI	GAWTC	5 cut(s)	257, 262, 376, 475, 625
Tru1I	TTAA	3 cut(s)	213, 317, 462
Tru9I	TTAA	3 cut(s)	213, 317, 462
TscAI	CASTG	2 cut(s)	159, 605
TseFI	GTSAC	3 cut(s)	19, 610, 1081
TseI	GCWGC	6 cut(s)	35, 53, 800, 908, 1116, 1157
Tsp45I	GTSAC	3 cut(s)	19, 610, 1081
TspDTI	ATGAA	3 cut(s)	345, 405, 755
TspRI	CASTG	2 cut(s)	159, 605
VpaK11BI	GGWCC	3 cut(s)	95, 683, 871
XapI	RAATTY	3 cut(s)	403, 458, 673
XceI	RCATGY	2 cut(s)	620, 1037
XmaJI	CCTAGG	1 cut(s)	662
XmnI	GAANNNNTTC	2 cut(s)	261, 530
XspI	CTAG	6 cut(s)	608, 663, 804, 827, 1140, 1209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.