AT5G67600

Cysteine-rich and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004625
Physical Location & Seq
Reverse (-)
26959533 .. 26960399
867 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67600.1

Sequence Viewer

Length: 249 bp
ATGTATCATCAAGAACAACATCCTGTCGGTGCTCCTCCTCCCCAAGGGTATCCACCTAAGGACGGTTATCCTCCGGCCGGTTATCCTCCAGCCGGTTATCCACCGCCAGGATATGCTCAGGGATACCCTGCACAAGGTTATCCTCCGCCGCAGTACTCTCAAGCTCCGCAGCAGAAGCAAAACGCCGGTATGCTTGAAGGATGTTTGGCTGCGCTCTGTTGTTGCTGTCTCTTGGATGCATGTTTCTGA

Protein Analysis

82

Amino Acids

8.71

Weight (kDa)

5.3

Isoelectric Point (pI)

80.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 45 - 82 3.1e-07 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 104, 146, 149, 167
AcoI YGGCCR 1 cut(s) 75
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 6 cut(s) 44, 62, 77, 92, 107, 134
AgsI TTSAA 1 cut(s) 197
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 233
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 169, 209
AspLEI GCGC 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 181, 196
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 2 cut(s) 60, 116
BcoDI GTCTC 1 cut(s) 233
BfuI GTATCC 2 cut(s) 60, 116
BisI GCNGC 3 cut(s) 149, 170, 210
BlsI GCNGC 3 cut(s) 150, 171, 211
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 62, 77, 92, 107, 134
Bse118I RCCGGY 3 cut(s) 77, 92, 185
Bse21I CCTNAGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 3 cut(s) 19, 206, 241
BseLI CCNNNNNNNGG 6 cut(s) 44, 62, 77, 92, 107, 134
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 24, 27
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 181, 196
BsgI GTGCAG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 4 cut(s) 74, 78, 93, 186
BslI CCNNNNNNNGG 6 cut(s) 44, 62, 77, 92, 107, 134
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 34
BspACI CCGC 4 cut(s) 104, 146, 149, 167
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 130
BsrFI RCCGGY 3 cut(s) 77, 92, 185
BssAI RCCGGY 3 cut(s) 77, 92, 185
BssECI CCNNGG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 57, 117
BstENI CCTNNNNNAGG 2 cut(s) 42, 132
BstF5I GGATG 3 cut(s) 19, 206, 241
BstHHI GCGC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 233
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 181, 196
BstZI CGGCCG 1 cut(s) 75
Bsu36I CCTNAGG 1 cut(s) 57
BsuI GTATCC 2 cut(s) 60, 116
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 3 cut(s) 19, 206, 241
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 3 cut(s) 77, 92, 185
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 240
CviJI RGCY 4 cut(s) 77, 92, 164, 209
CviKI_1 RGCY 4 cut(s) 77, 92, 164, 209
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 57, 117
EaeI YGGCCR 1 cut(s) 75
EagI CGGCCG 1 cut(s) 75
EciI GGCGGA 1 cut(s) 135
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 43
Eco52I CGGCCG 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 57
EcoNI CCTNNNNNAGG 2 cut(s) 42, 132
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 243
FaiI YATR 3 cut(s) 114, 191, 241
FatI CATG 1 cut(s) 239
Fnu4HI GCNGC 3 cut(s) 149, 170, 210
FokI GGATG 2 cut(s) 6, 213
Fsp4HI GCNGC 3 cut(s) 149, 170, 210
GlaI GCGC 1 cut(s) 213
GluI GCNGC 3 cut(s) 149, 170, 210
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 77
HapII CCGG 4 cut(s) 74, 78, 93, 186
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 243
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HpaII CCGG 4 cut(s) 74, 78, 93, 186
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 131, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 57, 117
Hsp92II CATG 1 cut(s) 243
HspAI GCGC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 37, 169
Lsp1109I GCAGC 2 cut(s) 181, 196
LweI GCATC 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 34
MnlI CCTC 5 cut(s) 45, 48, 81, 96, 153
Mph1103I ATGCAT 1 cut(s) 241
MspI CCGG 4 cut(s) 74, 78, 93, 186
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 175
NlaIII CATG 1 cut(s) 243
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 243
PkrI GCNGC 3 cut(s) 150, 171, 211
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 3 cut(s) 149, 170, 210
ScaI AGTACT 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 34
SetI ASST 3 cut(s) 58, 139, 166
SfaNI GCATC 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
SsiI CCGC 4 cut(s) 104, 146, 149, 167
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 65
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 151
TseI GCWGC 2 cut(s) 169, 209
XagI CCTNNNNNAGG 2 cut(s) 42, 132
XceI RCATGY 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.