Rroxscaffold_7G00212480

CYSTM1 family protein A-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
62945063 .. 62946166
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212480.1

Sequence Viewer

Length: 285 bp
ATGAGCTATTACAACCAGCAACAACCCCCAGTTGGTGTTCCTCCTCCTCAAGGTTATCCACCGGAGGGATATGCCAAAGACGCTTATCCTCCTCCGGGATATCCCCCGCAGGGGTATCCCCAGCAGGGATATCCTCCGCCGCAGGGATACCCCCAGCAATACCCTCCTCCCTATGCTCCTCAATACGCTCAGCCTCCCCCTCAACAGCAAAACAATAGCAGTGGATTTATGGAAGGCTGTTTGGCTGCTCTGTGCTGTTGCTGCTTGCTGGATGCCTGCTTCTGA

Protein Analysis

94

Amino Acids

10.29

Weight (kDa)

4.05

Isoelectric Point (pI)

100.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 107, 137, 140
AfiI CCNNNNNNNGG 8 cut(s) 32, 50, 65, 95, 110, 111, 125, 143
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 245, 261
AsuC2I CCSGG 1 cut(s) 96
BbvI GCAGC 2 cut(s) 232, 248
BciVI GTATCC 2 cut(s) 126, 140
BcnI CCSGG 1 cut(s) 96
BfuI GTATCC 2 cut(s) 126, 140
BisI GCNGC 3 cut(s) 140, 246, 262
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 3 cut(s) 141, 247, 263
Bme1390I CCNGG 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 8 cut(s) 32, 50, 65, 95, 110, 111, 125, 143
Bse1I ACTGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 8 cut(s) 32, 50, 65, 95, 110, 111, 125, 143
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 5 cut(s) 33, 36, 81, 156, 168
BseXI GCAGC 2 cut(s) 232, 248
BseYI CCCAGC 2 cut(s) 120, 153
BsiSI CCGG 2 cut(s) 62, 95
BslI CCNNNNNNNGG 8 cut(s) 32, 50, 65, 95, 110, 111, 125, 143
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 3 cut(s) 107, 137, 140
BspCNI CTCAG 1 cut(s) 202
BsrI ACTGG 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 266, 277
BstDEI CTNAG 1 cut(s) 189
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 80, 261
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 232, 248
BsuI GTATCC 2 cut(s) 126, 140
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 266, 277
CseI GACGC 1 cut(s) 89
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviJI RGCY 4 cut(s) 6, 193, 237, 245
CviKI_1 RGCY 4 cut(s) 6, 193, 237, 245
DdeI CTNAG 1 cut(s) 189
EciI GGCGGA 1 cut(s) 126
Eco32I GATATC 2 cut(s) 101, 131
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRV GATATC 2 cut(s) 101, 131
FaiI YATR 3 cut(s) 72, 174, 230
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 140, 246, 262
Fsp4HI GCNGC 3 cut(s) 140, 246, 262
GluI GCNGC 3 cut(s) 140, 246, 262
GsaI CCCAGC 2 cut(s) 124, 157
HapII CCGG 2 cut(s) 62, 95
HgaI GACGC 1 cut(s) 89
HpaII CCGG 2 cut(s) 62, 95
Hpy188I TCNGA 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 261
HpyF3I CTNAG 1 cut(s) 189
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 2 cut(s) 232, 248
LweI GCATC 1 cut(s) 262
MspI CCGG 2 cut(s) 62, 95
MspR9I CCNGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 80, 261
NciI CCSGG 1 cut(s) 96
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 3 cut(s) 141, 247, 263
PspFI CCCAGC 2 cut(s) 120, 153
SatI GCNGC 3 cut(s) 140, 246, 262
ScrFI CCNGG 1 cut(s) 96
SetI ASST 2 cut(s) 8, 55
SfaNI GCATC 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SsiI CCGC 3 cut(s) 107, 137, 140
StyD4I CCNGG 1 cut(s) 94
TauI GCSGC 1 cut(s) 142
TscAI CASTG 1 cut(s) 226
TseI GCWGC 2 cut(s) 245, 261
TspRI CASTG 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.