Rorug05G0537800

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002196
Physical Location & Seq
Reverse (-)
72685232 .. 72688909
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0537800.1

Sequence Viewer

Length: 810 bp
ATGCTGGAGGCAGGTCATTGTAAGCCCAATGTGGTTACTTTCACCACACTAATAAAGGGCTTTTGCATGATAGGGAACTACAATTCTGCCATTACTTTACTTGGGAAGATGGAAGAAATAGGATGCGAGCCTAACATAGTTTCCTATAACACCATCATCGACTGTCTTTGCAAGGATACACTAATTGATGAAGCAATGAATCTCTTCTCAGAAATGATCAGTAGGGGTATTGCTCCAGATGTTGTCACTTACACCTCTTTGATTCAGGGATTCTGCAATTTAGGCCAGTGGAAACAAGCTACAAGGTTGCTTAATGAAATGTTGAGTAAACGTATCTTTCCAGATGTCATCGCCTTCAATGTCTTGGTTGATACATTCTGTAAGGAAAGGATGGTTGTGGAAGCCAAAAGAGTGATTGACATGATGATTCAAAGACAAATTGAACCTACTGTGGTTACATACAGTTCTCCTATGGACGGTTACTGTTTGCAAAGAGAAATGGATGAGGCAAGACAAATTTTTGATCTTAGGATTAGCAAGGCCTCCATGGTTAATGTTTGGAGTTGTAACATATTGATTAACAGATATTGCAAGGCTAAAAAGATCGATCAGGCTTACAAGATCTTCAAGGAGATGCGCCGTATGGAACTTGTTCCCAATCCCGTTACTTATACCACTCTTATTGATGGTTTTTGCAAAGTAGGGAGAATTCAAGAAGCAGAAAAGCTGTTCTCTCAGATGCAACGTTGTGGCCAACATCCAAATGTTCGAACTTATGCTGTTCTGCTTGATGGCCTGTGTAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

269

Amino Acids

30.77

Weight (kDa)

7.9

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 4 - 123 3.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 7 - 38 2.8e-11 PPR repeat
PPR_3 PF13812 7 - 55 1.7e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 9 - 58 6.2e-16 PPR repeat family
PPR PF01535 12 - 42 3.4e-06 PPR repeat
PPR_1 PF12854 41 - 72 1.5e-13 PPR repeat
PPR_2 PF13041 44 - 93 6e-21 PPR repeat family
PPR PF01535 47 - 77 9.9e-09 PPR repeat
PPR_3 PF13812 68 - 127 5.5e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 75 - 107 2.9e-12 PPR repeat
PPR_2 PF13041 79 - 128 1.3e-16 PPR repeat family
PPR PF01535 82 - 112 1.5e-07 PPR repeat
PPR_1 PF12854 111 - 142 8.8e-07 PPR repeat
PPR_2 PF13041 114 - 162 2e-12 PPR repeat family
PPR_long PF17177 168 - 268 2.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 185 - 233 4.2e-18 PPR repeat family
PPR PF01535 188 - 215 4.3e-07 PPR repeat
PPR_1 PF12854 189 - 213 4.5e-07 PPR repeat
PPR_1 PF12854 216 - 248 2e-14 PPR repeat
PPR_3 PF13812 218 - 264 2.2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 219 - 268 2.8e-19 PPR repeat family
PPR PF01535 222 - 251 2.1e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AclI AACGTT 1 cut(s) 745
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 2 cut(s) 516, 708
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 5 cut(s) 358, 431, 443, 628, 713
AluBI AGCT 2 cut(s) 299, 727
AluI AGCT 2 cut(s) 299, 727
AoxI GGCC 4 cut(s) 283, 540, 751, 793
ApoI RAATTY 2 cut(s) 516, 708
Asp700I GAANNNNTTC 2 cut(s) 203, 651
AspLEI GCGC 1 cut(s) 639
AsuHPI GGTGA 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 769
BalI TGGCCA 1 cut(s) 753
BccI CCATC 5 cut(s) 103, 161, 385, 680, 785
BceAI ACGGC 1 cut(s) 624
BciVI GTATCC 1 cut(s) 169
BclI TGATCA 1 cut(s) 216
BfaI CTAG 1 cut(s) 808
BfuAI ACCTGC 1 cut(s) 2
BfuI GTATCC 1 cut(s) 169
BglII AGATCT 1 cut(s) 621
BmsI GCATC 3 cut(s) 113, 624, 729
BpmI CTGGAG 2 cut(s) 26, 219
Bpu14I TTCGAA 1 cut(s) 769
Bsa29I ATCGAT 1 cut(s) 606
BsaJI CCNNGG 1 cut(s) 546
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 4 cut(s) 128, 396, 508, 757
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 2 cut(s) 222, 749
BseNI ACTGG 1 cut(s) 286
BshFI GGCC 4 cut(s) 285, 542, 753, 795
BshVI ATCGAT 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 476
BsnI GGCC 4 cut(s) 285, 542, 753, 795
Bsp119I TTCGAA 1 cut(s) 769
Bsp143I GATC 5 cut(s) 216, 523, 603, 607, 621
Bsp19I CCATGG 1 cut(s) 546
BspANI GGCC 4 cut(s) 285, 542, 753, 795
BspCNI CTCAG 2 cut(s) 221, 748
BspDI ATCGAT 1 cut(s) 606
BspMI ACCTGC 1 cut(s) 2
BspT104I TTCGAA 1 cut(s) 769
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 5 cut(s) 216, 523, 603, 607, 621
BssT1I CCWWGG 1 cut(s) 546
Bst4CI ACNGT 5 cut(s) 164, 451, 464, 479, 485
Bst6I CTCTTC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 769
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 3 cut(s) 208, 527, 735
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 4 cut(s) 128, 396, 508, 757
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 5 cut(s) 219, 526, 606, 610, 624
BstMBI GATC 5 cut(s) 216, 523, 603, 607, 621
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
Bsu15I ATCGAT 1 cut(s) 606
BsuI GTATCC 1 cut(s) 169
BsuRI GGCC 4 cut(s) 285, 542, 753, 795
BsuTUI ATCGAT 1 cut(s) 606
BtgI CCRYGG 1 cut(s) 546
BtgZI GCGATG 1 cut(s) 334
BtsCI GGATG 4 cut(s) 128, 396, 508, 757
BtsIMutI CAGTG 1 cut(s) 293
BveI ACCTGC 1 cut(s) 2
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 1 cut(s) 639
ClaI ATCGAT 1 cut(s) 606
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviAII CATG 3 cut(s) 67, 421, 547
DdeI CTNAG 3 cut(s) 208, 527, 735
DpnI GATC 5 cut(s) 218, 525, 605, 609, 623
DpnII GATC 5 cut(s) 216, 523, 603, 607, 621
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 542
EcoRI GAATTC 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 3 cut(s) 70, 424, 550
FatI CATG 3 cut(s) 66, 420, 546
FbaI TGATCA 1 cut(s) 216
FokI GGATG 4 cut(s) 135, 403, 515, 744
FspBI CTAG 1 cut(s) 808
GlaI GCGC 1 cut(s) 638
GsuI CTGGAG 2 cut(s) 26, 219
HaeIII GGCC 4 cut(s) 285, 542, 753, 795
HhaI GCGC 1 cut(s) 639
Hin1II CATG 3 cut(s) 70, 424, 550
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HinfI GANTC 4 cut(s) 199, 262, 270, 427
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 211, 738
Hpy188III TCNNGA 3 cut(s) 236, 341, 713
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 5 cut(s) 164, 451, 464, 479, 485
HpyCH4IV ACGT 2 cut(s) 331, 745
HpyCH4V TGCA 7 cut(s) 66, 171, 276, 490, 591, 696, 742
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 3 cut(s) 208, 527, 735
HpySE526I ACGT 2 cut(s) 331, 745
Hsp92II CATG 3 cut(s) 70, 424, 550
HspAI GCGC 1 cut(s) 637
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 5 cut(s) 216, 523, 603, 607, 621
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 5 cut(s) 249, 251, 299, 354, 596
LweI GCATC 3 cut(s) 113, 624, 729
MaeI CTAG 1 cut(s) 808
MaeII ACGT 2 cut(s) 331, 745
MaeIII GTNAC 7 cut(s) 34, 244, 454, 479, 566, 664, 800
MalI GATC 5 cut(s) 218, 525, 605, 609, 623
MboI GATC 5 cut(s) 216, 523, 603, 607, 621
MboII GAAGA 4 cut(s) 118, 125, 196, 616
MflI RGATCY 1 cut(s) 621
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 6 cut(s) 82, 183, 277, 438, 516, 708
MluNI TGGCCA 1 cut(s) 753
MnlI CCTC 3 cut(s) 265, 499, 553
Mox20I TGGCCA 1 cut(s) 753
MroXI GAANNNNTTC 2 cut(s) 203, 651
MscI TGGCCA 1 cut(s) 753
MseI TTAA 3 cut(s) 312, 552, 579
MslI CAYNNNNRTG 1 cut(s) 762
Msp20I TGGCCA 1 cut(s) 753
MwoI GCNNNNNNNGC 1 cut(s) 282
NcoI CCATGG 1 cut(s) 546
NdeII GATC 5 cut(s) 216, 523, 603, 607, 621
NlaIII CATG 3 cut(s) 70, 424, 550
NmuCI GTSAC 1 cut(s) 244
NspV TTCGAA 1 cut(s) 769
PceI AGGCCT 1 cut(s) 542
PdmI GAANNNNTTC 2 cut(s) 203, 651
PfeI GAWTC 4 cut(s) 199, 262, 270, 427
Psp1406I AACGTT 1 cut(s) 745
PsuI RGATCY 1 cut(s) 621
RseI CAYNNNNRTG 1 cut(s) 762
SaqAI TTAA 3 cut(s) 312, 552, 579
Sau3AI GATC 5 cut(s) 216, 523, 603, 607, 621
SetI ASST 8 cut(s) 16, 257, 301, 308, 334, 448, 729, 748
SfaNI GCATC 3 cut(s) 113, 624, 729
SfuI TTCGAA 1 cut(s) 769
SmiMI CAYNNNNRTG 1 cut(s) 762
Sse9I AATT 6 cut(s) 82, 183, 277, 438, 516, 708
SseBI AGGCCT 1 cut(s) 542
SspMI CTAG 1 cut(s) 808
StuI AGGCCT 1 cut(s) 542
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 5 cut(s) 164, 451, 464, 479, 485
TaiI ACGT 2 cut(s) 334, 748
TaqI TCGA 3 cut(s) 159, 606, 769
TasI AATT 6 cut(s) 82, 183, 277, 438, 516, 708
TfiI GAWTC 4 cut(s) 199, 262, 270, 427
Tru1I TTAA 3 cut(s) 312, 552, 579
Tru9I TTAA 3 cut(s) 312, 552, 579
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 3 cut(s) 204, 212, 330
TspRI CASTG 1 cut(s) 293
XapI RAATTY 2 cut(s) 516, 708
XmnI GAANNNNTTC 2 cut(s) 203, 651
XspI CTAG 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.